Wall clock time and date at job start Tue Mar 31 2020 15:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35989 * 117.00320 * 2 1 4 4 C 1.38501 * 120.03107 * 359.97438 * 3 2 1 5 5 C 1.38831 * 119.92791 * 179.97438 * 4 3 2 6 6 N 1.40049 * 119.99678 * 180.02562 * 5 4 3 7 7 C 1.34780 * 119.99670 * 146.65802 * 6 5 4 8 8 O 1.21621 * 120.00348 * 354.91258 * 7 6 5 9 9 C 1.47412 * 119.99937 * 174.90289 * 7 6 5 10 10 C 1.41296 * 126.41465 * 359.69847 * 9 7 6 11 11 N 1.30451 * 108.02510 * 179.87381 * 10 9 7 12 12 N 1.39935 * 108.89745 * 0.38407 * 11 10 9 13 13 C 1.46496 * 125.75092 * 179.77601 * 12 11 10 14 14 C 1.50699 * 109.47028 * 269.97285 * 13 12 11 15 15 H 1.07997 * 120.00093 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00427 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99416 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00400 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47152 * 89.99510 * 18 16 14 20 20 H 1.48499 * 109.47277 * 209.99538 * 18 16 14 21 21 H 1.48502 * 109.47298 * 329.99925 * 18 16 14 22 22 C 1.34273 * 108.49246 * 359.75007 * 12 11 10 23 23 C 1.50691 * 126.29253 * 180.02562 * 22 12 11 24 24 C 1.38860 * 120.00303 * 0.27658 * 5 4 3 25 25 C 1.38187 * 120.07074 * 359.44870 * 24 5 4 26 26 C 1.38555 * 120.06980 * 0.55425 * 25 24 5 27 27 O 1.36067 * 120.00283 * 179.70087 * 26 25 24 28 28 H 1.08999 * 109.46795 * 60.00402 * 1 2 3 29 29 H 1.09004 * 109.47135 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47396 * 300.00389 * 1 2 3 31 31 H 1.07998 * 120.03827 * 0.02562 * 4 3 2 32 32 H 0.96998 * 120.00257 * 326.93968 * 6 5 4 33 33 H 1.08006 * 125.98825 * 0.03312 * 10 9 7 34 34 H 1.08995 * 109.47449 * 29.97463 * 13 12 11 35 35 H 1.09000 * 109.46938 * 149.97712 * 13 12 11 36 36 H 0.97000 * 119.99567 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.47419 * 269.97897 * 23 22 12 38 38 H 1.09004 * 109.47482 * 29.97328 * 23 22 12 39 39 H 1.08997 * 109.47479 * 149.97338 * 23 22 12 40 40 H 1.07997 * 119.95741 * 179.72888 * 24 5 4 41 41 H 1.07994 * 119.96026 * 180.24913 * 25 24 5 42 42 H 0.96695 * 114.00220 * 270.01914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2928 2.3737 -0.0005 5 6 1.9254 3.6095 0.0000 6 7 1.1647 4.7854 0.0000 7 6 1.6173 5.8806 0.6420 8 8 2.6396 5.8220 1.2982 9 6 0.8732 7.1498 0.5487 10 6 -0.3192 7.3717 -0.1762 11 7 -0.6671 8.6178 -0.0092 12 7 0.2767 9.2459 0.8111 13 6 0.2468 10.6489 1.2314 14 6 0.9945 11.4896 0.2288 15 1 1.4472 11.0252 -0.6348 16 6 1.1018 12.8516 0.4145 17 7 0.5510 13.4171 1.4665 18 14 2.0292 13.8936 -0.8278 19 1 1.0914 14.3614 -1.8799 20 1 2.6280 15.0664 -0.1414 21 1 3.1056 13.0813 -1.4498 22 6 1.2141 8.3456 1.1485 23 6 2.4167 8.5946 2.0217 24 6 3.3122 3.6796 -0.0047 25 6 4.0642 2.5203 0.0015 26 6 3.4360 1.2853 0.0009 27 8 4.1778 0.1447 0.0010 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2142 2.3185 -0.0005 32 1 0.3104 4.8104 -0.4585 33 1 -0.8509 6.6375 -0.7633 34 1 -0.7872 10.9884 1.2910 35 1 0.7178 10.7453 2.2096 36 1 0.6261 14.3754 1.5970 37 1 3.2551 8.9144 1.4028 38 1 2.1835 9.3733 2.7479 39 1 2.6815 7.6764 2.5459 40 1 3.8035 4.6414 -0.0087 41 1 5.1426 2.5770 0.0019 42 1 4.3929 -0.1847 -0.8824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639603116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:46 Heat of formation + Delta-G solvation = -40.267758 kcal Electronic energy + Delta-G solvation = -27145.214395 eV Core-core repulsion = 23091.637477 eV Total energy + Delta-G solvation = -4053.576918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.44059 -41.58465 -40.37161 -38.67399 -37.60879 -35.85713 -35.16436 -33.81171 -32.79319 -31.28958 -30.29323 -29.04887 -28.30728 -27.69727 -25.47155 -24.26202 -23.52513 -22.86957 -21.29154 -20.65729 -19.62818 -18.93334 -18.89171 -18.63736 -17.45382 -16.94622 -16.87815 -16.73193 -16.41318 -16.18444 -16.07351 -15.60587 -15.49748 -15.02331 -14.79512 -14.72389 -14.29335 -14.13443 -13.83261 -13.69818 -13.59053 -13.38248 -13.12561 -13.09748 -12.98464 -12.71187 -12.44495 -12.31662 -12.21211 -11.86700 -11.76714 -11.54942 -11.10043 -10.80929 -10.76813 -10.29910 -9.67719 -9.51677 -8.80493 -8.38777 -6.55006 0.05541 0.35456 0.68186 1.29343 1.37145 1.38567 1.48058 1.59228 2.08939 2.31553 2.34511 2.36697 2.72306 2.93771 3.31538 3.65753 3.70532 3.86619 4.02676 4.12950 4.18458 4.21308 4.38197 4.43349 4.46639 4.57631 4.61473 4.62218 4.77639 4.78896 4.87415 4.93464 5.06613 5.14503 5.26465 5.32780 5.40830 5.48343 5.62832 5.73722 5.77844 6.00582 6.27997 6.45417 6.53735 6.80677 6.93192 7.16097 7.18075 8.69141 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.002283 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.197899 B =12262.968876 C =12809.938705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.115 3.885 4 C -0.217 4.217 5 C 0.180 3.820 6 N -0.658 5.658 7 C 0.609 3.391 8 O -0.556 6.556 9 C -0.331 4.331 10 C 0.083 3.917 11 N -0.334 5.334 12 N -0.337 5.337 13 C 0.266 3.734 14 C -0.555 4.555 15 H 0.052 0.948 16 C 0.024 3.976 17 N -0.916 5.916 18 Si 0.971 3.029 19 H -0.273 1.273 20 H -0.272 1.272 21 H -0.269 1.269 22 C 0.152 3.848 23 C -0.089 4.089 24 C -0.158 4.158 25 C -0.087 4.087 26 C 0.044 3.956 27 O -0.498 6.498 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.061 0.939 31 H 0.162 0.838 32 H 0.426 0.574 33 H 0.231 0.769 34 H 0.032 0.968 35 H 0.051 0.949 36 H 0.274 0.726 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.151 0.849 42 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.866 -24.942 -5.153 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.068 3.932 4 C -0.238 4.238 5 C 0.085 3.915 6 N -0.303 5.303 7 C 0.400 3.600 8 O -0.435 6.435 9 C -0.347 4.347 10 C -0.105 4.105 11 N -0.154 5.154 12 N -0.114 5.114 13 C 0.148 3.852 14 C -0.593 4.593 15 H 0.071 0.929 16 C -0.178 4.178 17 N -0.554 5.554 18 Si 0.795 3.205 19 H -0.198 1.198 20 H -0.197 1.197 21 H -0.194 1.194 22 C 0.016 3.984 23 C -0.147 4.147 24 C -0.179 4.179 25 C -0.106 4.106 26 C -0.002 4.002 27 O -0.310 6.310 28 H 0.090 0.910 29 H 0.137 0.863 30 H 0.079 0.921 31 H 0.179 0.821 32 H 0.265 0.735 33 H 0.247 0.753 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.144 0.856 41 H 0.169 0.831 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.647 -23.795 -4.239 24.179 hybrid contribution 0.216 0.581 -0.900 1.093 sum 0.863 -23.214 -5.139 23.792 Atomic orbital electron populations 1.23404 0.76458 1.05721 1.02444 1.86139 1.23370 1.25663 1.88450 1.19223 0.91619 0.84938 0.97389 1.20957 1.01440 0.89498 1.11907 1.17552 0.90740 0.85477 0.97760 1.43116 1.24137 1.09083 1.53982 1.17194 0.83272 0.82255 0.77247 1.90725 1.25944 1.84971 1.41877 1.19733 1.04228 0.94261 1.16459 1.24570 0.94250 0.94006 0.97633 1.77121 1.15381 1.09104 1.13757 1.49131 1.16783 1.10690 1.34784 1.19387 0.98416 0.71417 0.95997 1.21383 1.35993 0.92995 1.08929 0.92925 1.25722 0.95978 0.98507 0.97562 1.69995 1.44289 1.12464 1.28694 0.85357 0.78642 0.78009 0.78535 1.19814 1.19706 1.19378 1.21961 0.92213 0.88877 0.95376 1.20584 0.92272 1.03984 0.97820 1.21021 0.92663 0.99250 1.04940 1.21234 1.01288 0.89928 0.98181 1.17822 0.86575 0.86793 1.08979 1.84865 1.71836 1.39311 1.34969 0.91020 0.86277 0.92053 0.82057 0.73524 0.75323 0.94950 0.93088 0.91661 0.89680 0.90999 0.87897 0.85638 0.83099 0.74057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.32 -5.90 10.28 -79.46 -0.82 -6.72 16 3 C 0.12 2.33 6.70 22.55 0.15 2.48 16 4 C -0.22 -3.94 8.95 22.47 0.20 -3.74 16 5 C 0.18 4.02 6.28 38.12 0.24 4.26 16 6 N -0.66 -14.20 5.33 -306.35 -1.63 -15.83 16 7 C 0.61 18.15 7.55 86.66 0.65 18.81 16 8 O -0.56 -19.50 12.53 -4.10 -0.05 -19.55 16 9 C -0.33 -10.99 6.13 -20.15 -0.12 -11.11 16 10 C 0.08 2.51 11.51 85.65 0.99 3.49 16 11 N -0.33 -13.65 12.50 -56.27 -0.70 -14.35 16 12 N -0.34 -15.00 3.56 -336.71 -1.20 -16.20 16 13 C 0.27 13.43 5.97 85.63 0.51 13.94 16 14 C -0.55 -29.97 9.39 25.60 0.24 -29.73 16 15 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 16 C 0.02 1.27 5.46 84.65 0.46 1.73 16 17 N -0.92 -50.63 13.29 21.45 0.28 -50.35 16 18 Si 0.97 42.04 29.54 68.60 2.03 44.07 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 C 0.15 5.95 7.01 42.14 0.30 6.25 16 23 C -0.09 -3.12 9.57 71.23 0.68 -2.44 16 24 C -0.16 -3.92 8.65 22.41 0.19 -3.73 16 25 C -0.09 -1.88 9.97 22.33 0.22 -1.66 16 26 C 0.04 0.94 6.72 22.57 0.15 1.10 16 27 O -0.50 -9.57 13.29 -80.35 -1.07 -10.63 16 28 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 29 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 31 H 0.16 1.94 6.29 -2.91 -0.02 1.93 16 32 H 0.43 6.04 7.79 -92.71 -0.72 5.32 16 33 H 0.23 4.07 7.51 -2.91 -0.02 4.04 16 34 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 2.58 7.02 -2.39 -0.02 2.56 16 36 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 37 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.07 2.52 7.05 -2.38 -0.02 2.51 16 39 H 0.10 3.41 6.50 -2.39 -0.02 3.39 16 40 H 0.13 3.56 6.42 -2.91 -0.02 3.54 16 41 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 42 H 0.40 3.80 9.06 -74.06 -0.67 3.13 16 Total: -1.00 -71.74 362.85 2.53 -69.22 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -0.29 Total: 19.46 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 5.98 Total: 0.89 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -3.25 Total: -96.73 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -1.94 Total: -36.90 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -71.74 2.53 -69.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639603116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.949 kcal (2) G-P(sol) polarization free energy of solvation -71.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds