Wall clock time and date at job start Tue Mar 31 2020 15:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38049 * 126.28961 * 2 1 4 4 C 1.47430 * 126.41743 * 359.97438 * 3 2 1 5 5 O 1.21602 * 119.99760 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99832 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99729 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47109 * 179.97438 * 7 6 4 9 9 C 1.38283 * 120.00461 * 259.98151 * 8 7 6 10 10 C 1.38205 * 120.14926 * 180.02562 * 9 8 7 11 11 C 1.38291 * 120.14649 * 0.02562 * 10 9 8 12 12 C 1.38527 * 119.99574 * 359.97438 * 11 10 9 13 13 O 1.35994 * 120.07075 * 180.27982 * 12 11 10 14 14 C 1.38522 * 119.99573 * 80.00617 * 8 7 6 15 15 O 1.35995 * 120.07525 * 359.95620 * 14 8 7 16 16 C 1.41289 * 107.16881 * 180.25085 * 3 2 1 17 17 N 1.30448 * 108.02396 * 359.61655 * 16 3 2 18 18 N 1.34257 * 126.29267 * 180.02562 * 2 1 3 19 19 C 1.46499 * 125.75500 * 359.95477 * 18 2 1 20 20 C 1.50701 * 109.47261 * 89.99928 * 19 18 2 21 21 H 1.08009 * 119.99861 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00315 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99891 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00068 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47177 * 60.00010 * 24 22 20 26 26 H 1.48496 * 109.46849 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47126 * 299.99968 * 24 22 20 28 28 H 1.08998 * 109.47043 * 89.96995 * 1 2 3 29 29 H 1.08994 * 109.46982 * 209.97035 * 1 2 3 30 30 H 1.08996 * 109.46771 * 329.97636 * 1 2 3 31 31 H 0.97004 * 120.00645 * 0.02562 * 6 4 3 32 32 H 1.09001 * 109.47158 * 60.00580 * 7 6 4 33 33 H 1.09002 * 109.47723 * 300.00424 * 7 6 4 34 34 H 1.08002 * 119.92659 * 0.04602 * 9 8 7 35 35 H 1.07995 * 119.93073 * 180.02562 * 10 9 8 36 36 H 1.07998 * 120.00254 * 180.02562 * 11 10 9 37 37 H 0.96696 * 114.00006 * 269.72644 * 13 12 11 38 38 H 0.96706 * 113.99739 * 270.01781 * 15 14 8 39 39 H 1.07996 * 125.98855 * 179.74422 * 16 3 2 40 40 H 1.08990 * 109.47355 * 209.99939 * 19 18 2 41 41 H 1.08997 * 109.46938 * 330.00628 * 19 18 2 42 42 H 0.97002 * 119.99925 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 -0.0005 5 8 0.6996 2.7878 -0.0006 6 7 2.7999 3.5107 0.0001 7 6 2.3644 4.9095 -0.0010 8 6 3.5717 5.8115 0.0006 9 6 3.9991 6.3926 1.1803 10 6 5.1056 7.2207 1.1851 11 6 5.7899 7.4723 0.0100 12 6 5.3669 6.8933 -1.1753 13 8 6.0421 7.1351 -2.3307 14 6 4.2529 6.0588 -1.1800 15 8 3.8341 5.4878 -2.3410 16 6 3.6590 0.6499 -0.0059 17 7 3.6340 -0.6543 -0.0009 18 7 2.3017 -1.0821 -0.0005 19 6 1.8501 -2.4758 -0.0002 20 6 1.6944 -2.9537 -1.4209 21 1 1.9106 -2.2862 -2.2420 22 6 1.2759 -4.2431 -1.6726 23 7 1.0131 -5.0561 -0.6728 24 14 1.0835 -4.8357 -3.4336 25 1 2.3896 -4.7393 -4.1338 26 1 0.6257 -6.2483 -3.4333 27 1 0.0830 -3.9907 -4.1337 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5133 30 1 -0.3633 0.8898 0.5142 31 1 3.7462 3.2974 0.0005 32 1 1.7649 5.1041 0.8882 33 1 1.7667 5.1033 -0.8917 34 1 3.4673 6.1987 2.1001 35 1 5.4366 7.6724 2.1085 36 1 6.6545 8.1195 0.0165 37 1 5.7169 7.9010 -2.8234 38 1 4.2337 4.6260 -2.5220 39 1 4.5448 1.2677 -0.0113 40 1 2.5850 -3.0957 0.5131 41 1 0.8918 -2.5470 0.5142 42 1 0.7191 -5.9633 -0.8499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643809063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:14 Heat of formation + Delta-G solvation = -30.826541 kcal Electronic energy + Delta-G solvation = -27165.167985 eV Core-core repulsion = 23112.000469 eV Total energy + Delta-G solvation = -4053.167516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86689 -40.60203 -38.76527 -37.35612 -36.90516 -34.64995 -33.88232 -32.15012 -31.42391 -30.88079 -29.54583 -27.76465 -26.76057 -25.84546 -23.43075 -22.92676 -22.24753 -21.67718 -19.90387 -19.17675 -18.67294 -18.37127 -17.15342 -16.77887 -16.67307 -16.02954 -15.90239 -15.36031 -15.15884 -14.95704 -14.51856 -14.30638 -14.17304 -13.92643 -13.57030 -13.16934 -12.93427 -12.63425 -12.61421 -12.41741 -12.33917 -12.10935 -12.08325 -11.78116 -11.63221 -11.47627 -11.13779 -10.87286 -10.50131 -10.37594 -10.20798 -9.96035 -9.58142 -9.11203 -8.99213 -8.92816 -8.70969 -8.60013 -7.92389 -6.33821 -4.41787 0.70838 0.74406 2.18210 2.78299 2.93909 3.20092 3.23385 3.24081 3.31685 3.63516 3.70647 3.90930 3.97972 4.24159 4.30986 4.53570 4.86072 4.87859 4.99443 5.08548 5.19661 5.23594 5.33810 5.45137 5.54454 5.69907 5.77449 5.83250 5.91216 5.94291 6.07643 6.13029 6.24995 6.40801 6.51857 6.59375 6.79113 6.90186 7.11484 7.14788 7.41155 7.55356 7.70256 7.76698 7.78484 8.36619 8.58663 8.63617 9.25126 10.74368 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.002380 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.567187 B =11763.932244 C =12236.929326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.166 3.834 3 C -0.333 4.333 4 C 0.605 3.395 5 O -0.554 6.554 6 N -0.732 5.732 7 C 0.169 3.831 8 C -0.117 4.117 9 C -0.093 4.093 10 C -0.115 4.115 11 C -0.127 4.127 12 C 0.077 3.923 13 O -0.492 6.492 14 C 0.101 3.899 15 O -0.487 6.487 16 C 0.057 3.943 17 N -0.295 5.295 18 N -0.314 5.314 19 C 0.251 3.749 20 C -0.541 4.541 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.890 5.890 24 Si 0.908 3.092 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.396 0.604 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.392 0.608 38 H 0.396 0.604 39 H 0.174 0.826 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.075 24.450 3.007 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.029 3.971 3 C -0.348 4.348 4 C 0.396 3.604 5 O -0.433 6.433 6 N -0.384 5.384 7 C 0.046 3.954 8 C -0.118 4.118 9 C -0.112 4.112 10 C -0.133 4.133 11 C -0.145 4.145 12 C 0.032 3.968 13 O -0.302 6.302 14 C 0.055 3.945 15 O -0.298 6.298 16 C -0.130 4.130 17 N -0.115 5.115 18 N -0.091 5.091 19 C 0.134 3.866 20 C -0.579 4.579 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.735 3.265 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.230 0.770 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.248 0.752 38 H 0.253 0.747 39 H 0.191 0.809 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.816 23.182 3.167 24.370 hybrid contribution 0.162 0.203 -1.123 1.153 sum 6.977 23.384 2.044 24.488 Atomic orbital electron populations 1.20572 0.86791 1.03778 1.03959 1.21483 0.94971 0.86520 0.94144 1.19650 0.93105 0.92421 1.29660 1.17298 0.84941 0.83808 0.74386 1.90700 1.16671 1.84392 1.51541 1.45730 1.09744 1.04866 1.78076 1.19985 0.92731 0.79262 1.03425 1.20248 0.98602 1.00487 0.92467 1.21109 0.96471 0.96274 0.97356 1.21074 0.95566 0.98657 0.97997 1.21432 1.00711 1.00302 0.92104 1.18855 0.91425 0.99558 0.86993 1.84811 1.58255 1.53205 1.33941 1.18744 0.92216 0.97597 0.85915 1.84760 1.69202 1.38737 1.37087 1.23696 0.96283 0.92643 1.00391 1.77142 0.98647 1.12252 1.23463 1.49374 1.02466 1.08324 1.48894 1.19850 0.96409 0.70888 0.99438 1.21206 1.47547 0.98170 0.90979 0.91715 1.24919 0.94423 0.95979 0.98306 1.69902 1.44412 1.07215 1.31185 0.86378 0.78890 0.77758 0.83486 1.19902 1.20863 1.19826 0.89809 0.90873 0.88813 0.76994 0.90644 0.90048 0.84900 0.85060 0.84949 0.75205 0.74699 0.80910 0.92520 0.92544 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.57 36.01 0.34 -1.33 16 2 C 0.17 3.36 7.01 -81.60 -0.57 2.79 16 3 C -0.33 -5.98 6.13 -105.06 -0.64 -6.63 16 4 C 0.61 9.81 7.81 -12.52 -0.10 9.71 16 5 O -0.55 -10.42 14.84 5.28 0.08 -10.35 16 6 N -0.73 -8.69 5.54 -62.56 -0.35 -9.03 16 7 C 0.17 1.81 5.46 -5.19 -0.03 1.78 16 8 C -0.12 -1.05 5.26 -104.50 -0.55 -1.60 16 9 C -0.09 -0.69 9.66 -39.58 -0.38 -1.08 16 10 C -0.11 -0.74 10.04 -39.57 -0.40 -1.14 16 11 C -0.13 -0.90 9.98 -39.46 -0.39 -1.30 16 12 C 0.08 0.66 6.72 -39.12 -0.26 0.40 16 13 O -0.49 -4.02 13.29 -34.20 -0.45 -4.47 16 14 C 0.10 0.95 6.69 -39.12 -0.26 0.69 16 15 O -0.49 -4.81 12.52 -34.21 -0.43 -5.24 16 16 C 0.06 0.97 11.50 -16.98 -0.20 0.78 16 17 N -0.30 -6.30 12.50 30.86 0.39 -5.91 16 18 N -0.31 -7.06 3.56 -57.78 -0.21 -7.27 16 19 C 0.25 6.24 5.97 -5.19 -0.03 6.21 16 20 C -0.54 -14.55 9.39 -34.44 -0.32 -14.87 16 21 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 23 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 24 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.07 1.29 7.05 -51.93 -0.37 0.92 16 30 H 0.09 1.61 6.50 -51.93 -0.34 1.28 16 31 H 0.40 3.90 7.42 -40.82 -0.30 3.60 16 32 H 0.08 0.80 8.00 -51.93 -0.42 0.39 16 33 H 0.08 1.00 7.85 -51.93 -0.41 0.59 16 34 H 0.13 0.80 8.04 -52.49 -0.42 0.38 16 35 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.39 1.60 9.06 45.56 0.41 2.01 16 38 H 0.40 2.90 9.07 45.56 0.41 3.31 16 39 H 0.17 2.11 7.50 -52.49 -0.39 1.72 16 40 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.06 1.39 7.02 -51.93 -0.36 1.03 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -33.35 369.06 -7.01 -40.35 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.42 Total: 8.27 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -3.89 Total: -3.87 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.57 Total: -46.05 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.80 Total: -20.06 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.35 -7.01 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643809063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.526 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds