Wall clock time and date at job start Tue Mar 31 2020 15:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38049 * 126.28961 * 2 1 4 4 C 1.47430 * 126.41743 * 359.97438 * 3 2 1 5 5 O 1.21602 * 119.99760 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99832 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99729 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47109 * 179.97438 * 7 6 4 9 9 C 1.38283 * 120.00461 * 259.98151 * 8 7 6 10 10 C 1.38205 * 120.14926 * 180.02562 * 9 8 7 11 11 C 1.38291 * 120.14649 * 0.02562 * 10 9 8 12 12 C 1.38527 * 119.99574 * 359.97438 * 11 10 9 13 13 O 1.35994 * 120.07075 * 180.27982 * 12 11 10 14 14 C 1.38522 * 119.99573 * 80.00617 * 8 7 6 15 15 O 1.35995 * 120.07525 * 359.95620 * 14 8 7 16 16 C 1.41289 * 107.16881 * 180.25085 * 3 2 1 17 17 N 1.30448 * 108.02396 * 359.61655 * 16 3 2 18 18 N 1.34257 * 126.29267 * 180.02562 * 2 1 3 19 19 C 1.46499 * 125.75500 * 359.95477 * 18 2 1 20 20 C 1.50701 * 109.47261 * 89.99928 * 19 18 2 21 21 H 1.08009 * 119.99861 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00315 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99891 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00068 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47177 * 60.00010 * 24 22 20 26 26 H 1.48496 * 109.46849 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47126 * 299.99968 * 24 22 20 28 28 H 1.08998 * 109.47043 * 89.96995 * 1 2 3 29 29 H 1.08994 * 109.46982 * 209.97035 * 1 2 3 30 30 H 1.08996 * 109.46771 * 329.97636 * 1 2 3 31 31 H 0.97004 * 120.00645 * 0.02562 * 6 4 3 32 32 H 1.09001 * 109.47158 * 60.00580 * 7 6 4 33 33 H 1.09002 * 109.47723 * 300.00424 * 7 6 4 34 34 H 1.08002 * 119.92659 * 0.04602 * 9 8 7 35 35 H 1.07995 * 119.93073 * 180.02562 * 10 9 8 36 36 H 1.07998 * 120.00254 * 180.02562 * 11 10 9 37 37 H 0.96696 * 114.00006 * 269.72644 * 13 12 11 38 38 H 0.96706 * 113.99739 * 270.01781 * 15 14 8 39 39 H 1.07996 * 125.98855 * 179.74422 * 16 3 2 40 40 H 1.08990 * 109.47355 * 209.99939 * 19 18 2 41 41 H 1.08997 * 109.46938 * 330.00628 * 19 18 2 42 42 H 0.97002 * 119.99925 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 -0.0005 5 8 0.6996 2.7878 -0.0006 6 7 2.7999 3.5107 0.0001 7 6 2.3644 4.9095 -0.0010 8 6 3.5717 5.8115 0.0006 9 6 3.9991 6.3926 1.1803 10 6 5.1056 7.2207 1.1851 11 6 5.7899 7.4723 0.0100 12 6 5.3669 6.8933 -1.1753 13 8 6.0421 7.1351 -2.3307 14 6 4.2529 6.0588 -1.1800 15 8 3.8341 5.4878 -2.3410 16 6 3.6590 0.6499 -0.0059 17 7 3.6340 -0.6543 -0.0009 18 7 2.3017 -1.0821 -0.0005 19 6 1.8501 -2.4758 -0.0002 20 6 1.6944 -2.9537 -1.4209 21 1 1.9106 -2.2862 -2.2420 22 6 1.2759 -4.2431 -1.6726 23 7 1.0131 -5.0561 -0.6728 24 14 1.0835 -4.8357 -3.4336 25 1 2.3896 -4.7393 -4.1338 26 1 0.6257 -6.2483 -3.4333 27 1 0.0830 -3.9907 -4.1337 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5133 30 1 -0.3633 0.8898 0.5142 31 1 3.7462 3.2974 0.0005 32 1 1.7649 5.1041 0.8882 33 1 1.7667 5.1033 -0.8917 34 1 3.4673 6.1987 2.1001 35 1 5.4366 7.6724 2.1085 36 1 6.6545 8.1195 0.0165 37 1 5.7169 7.9010 -2.8234 38 1 4.2337 4.6260 -2.5220 39 1 4.5448 1.2677 -0.0113 40 1 2.5850 -3.0957 0.5131 41 1 0.8918 -2.5470 0.5142 42 1 0.7191 -5.9633 -0.8499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643809063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:13 Heat of formation + Delta-G solvation = -56.530363 kcal Electronic energy + Delta-G solvation = -27166.282586 eV Core-core repulsion = 23112.000469 eV Total energy + Delta-G solvation = -4054.282118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.31676 -41.31740 -39.99275 -38.02762 -37.54120 -35.85874 -35.62312 -33.85029 -32.80060 -31.94162 -30.12786 -29.32358 -28.33290 -26.90276 -25.27707 -23.51438 -23.42826 -22.55489 -21.28743 -20.59790 -19.41777 -19.05053 -18.85647 -18.38272 -17.38229 -17.01364 -16.80507 -16.48622 -16.42162 -16.22107 -16.05048 -15.53614 -15.30936 -14.89917 -14.62004 -14.40303 -14.25908 -14.04818 -13.72191 -13.66241 -13.56728 -13.35222 -13.09343 -12.98027 -12.96916 -12.79174 -12.69183 -12.30328 -12.21346 -11.88177 -11.73498 -11.12588 -10.88061 -10.76097 -10.27043 -10.13275 -9.78761 -9.50944 -9.43576 -8.38021 -6.54430 0.10413 0.18335 0.68637 1.32602 1.38455 1.38995 1.47494 1.66102 2.27049 2.32798 2.55423 2.67907 2.94271 3.12536 3.36221 3.63579 3.74612 3.77776 4.00712 4.13370 4.23971 4.29485 4.32589 4.49891 4.58728 4.61535 4.68706 4.79801 4.84976 4.89930 4.92605 5.07451 5.17539 5.29917 5.36336 5.44313 5.48615 5.50224 5.67498 5.74673 5.75348 6.04444 6.54270 6.59082 6.62699 6.84795 6.87571 7.16601 7.35181 8.69681 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.002380 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.567187 B =11763.932244 C =12236.929326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.145 3.855 3 C -0.329 4.329 4 C 0.607 3.393 5 O -0.582 6.582 6 N -0.709 5.709 7 C 0.175 3.825 8 C -0.125 4.125 9 C -0.094 4.094 10 C -0.109 4.109 11 C -0.125 4.125 12 C 0.066 3.934 13 O -0.505 6.505 14 C 0.086 3.914 15 O -0.502 6.502 16 C 0.080 3.920 17 N -0.336 5.336 18 N -0.338 5.338 19 C 0.267 3.733 20 C -0.556 4.556 21 H 0.052 0.948 22 C 0.024 3.976 23 N -0.916 5.916 24 Si 0.970 3.030 25 H -0.273 1.273 26 H -0.273 1.273 27 H -0.267 1.267 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.409 0.591 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.148 0.852 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.407 0.593 38 H 0.403 0.597 39 H 0.224 0.776 40 H 0.031 0.969 41 H 0.051 0.949 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.304 26.572 3.010 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.010 3.990 3 C -0.345 4.345 4 C 0.397 3.603 5 O -0.464 6.464 6 N -0.361 5.361 7 C 0.052 3.948 8 C -0.126 4.126 9 C -0.112 4.112 10 C -0.127 4.127 11 C -0.144 4.144 12 C 0.021 3.979 13 O -0.318 6.318 14 C 0.040 3.960 15 O -0.314 6.314 16 C -0.107 4.107 17 N -0.156 5.156 18 N -0.115 5.115 19 C 0.149 3.851 20 C -0.594 4.594 21 H 0.070 0.930 22 C -0.177 4.177 23 N -0.554 5.554 24 Si 0.794 3.206 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.192 1.192 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.245 0.755 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.166 0.834 35 H 0.177 0.823 36 H 0.168 0.832 37 H 0.266 0.734 38 H 0.261 0.739 39 H 0.241 0.759 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.075 25.347 3.171 26.791 hybrid contribution -0.136 -0.268 -1.089 1.129 sum 7.939 25.079 2.082 26.388 Atomic orbital electron populations 1.20549 0.85930 1.04049 1.03896 1.21968 0.95920 0.86756 0.94402 1.19923 0.93223 0.92958 1.28354 1.17092 0.84991 0.83731 0.74521 1.90689 1.17976 1.84662 1.53037 1.45540 1.09762 1.04779 1.76023 1.19950 0.93636 0.78495 1.02731 1.20081 0.98231 1.01106 0.93162 1.21326 0.96751 0.95941 0.97223 1.21392 0.94691 0.97740 0.98848 1.21702 1.01072 0.99926 0.91676 1.19009 0.91417 0.99820 0.87686 1.84765 1.58483 1.54310 1.34210 1.18906 0.92963 0.98299 0.85803 1.84738 1.69657 1.39396 1.37650 1.24462 0.97576 0.91588 0.97083 1.77097 0.98320 1.14443 1.25716 1.49103 1.03384 1.07754 1.51284 1.19361 0.95293 0.72363 0.98123 1.21365 1.47994 0.98508 0.91575 0.93007 1.25722 0.93822 0.95939 1.02249 1.69986 1.44764 1.07607 1.33074 0.85416 0.78827 0.77692 0.78661 1.19828 1.19745 1.19168 0.89984 0.91069 0.87935 0.75487 0.90299 0.91763 0.83447 0.82324 0.83156 0.73445 0.73898 0.75931 0.95048 0.93149 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.18 9.57 71.24 0.68 -2.50 16 2 C 0.15 5.95 7.01 42.14 0.30 6.24 16 3 C -0.33 -11.52 6.13 -20.15 -0.12 -11.65 16 4 C 0.61 18.91 7.81 86.67 0.68 19.58 16 5 O -0.58 -21.54 14.84 -4.04 -0.06 -21.60 16 6 N -0.71 -15.45 5.54 -470.11 -2.60 -18.06 16 7 C 0.17 3.49 5.46 85.63 0.47 3.95 16 8 C -0.12 -1.99 5.26 -19.79 -0.10 -2.10 16 9 C -0.09 -1.12 9.66 22.27 0.22 -0.90 16 10 C -0.11 -1.03 10.04 22.27 0.22 -0.80 16 11 C -0.13 -1.41 9.98 22.35 0.22 -1.19 16 12 C 0.07 1.01 6.72 22.57 0.15 1.16 16 13 O -0.51 -7.46 13.29 -79.64 -1.06 -8.52 16 14 C 0.09 1.49 6.69 22.57 0.15 1.64 16 15 O -0.50 -9.51 12.52 -79.65 -1.00 -10.51 16 16 C 0.08 2.59 11.50 85.65 0.99 3.58 16 17 N -0.34 -14.33 12.50 -56.28 -0.70 -15.03 16 18 N -0.34 -15.58 3.56 -336.71 -1.20 -16.78 16 19 C 0.27 13.82 5.97 85.63 0.51 14.33 16 20 C -0.56 -30.71 9.39 25.60 0.24 -30.47 16 21 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 22 C 0.02 1.31 5.46 84.65 0.46 1.77 16 23 N -0.92 -51.36 13.29 21.45 0.28 -51.07 16 24 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 29 H 0.07 2.59 7.05 -2.39 -0.02 2.58 16 30 H 0.10 3.56 6.50 -2.39 -0.02 3.54 16 31 H 0.41 6.89 7.42 -92.71 -0.69 6.20 16 32 H 0.08 1.55 8.00 -2.39 -0.02 1.53 16 33 H 0.06 1.54 7.85 -2.39 -0.02 1.52 16 34 H 0.15 1.30 8.04 -2.91 -0.02 1.27 16 35 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 36 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.41 2.76 9.06 -74.06 -0.67 2.09 16 38 H 0.40 5.57 9.07 -74.05 -0.67 4.90 16 39 H 0.22 4.61 7.50 -2.91 -0.02 4.59 16 40 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.05 2.61 7.02 -2.39 -0.02 2.59 16 42 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -72.90 369.06 -0.18 -73.07 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -0.92 Total: 21.08 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 5.06 Total: 2.65 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -4.22 Total: -100.93 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -2.12 Total: -40.63 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -72.90 -0.18 -73.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643809063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.544 kcal (2) G-P(sol) polarization free energy of solvation -72.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds