Wall clock time and date at job start Tue Mar 31 2020 15:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30841 * 125.83036 * 2 1 4 4 N 1.40084 * 108.33703 * 180.16851 * 3 2 1 5 5 C 1.46491 * 126.06337 * 179.85671 * 4 3 2 6 6 C 1.50702 * 109.46957 * 269.68691 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.35792 * 107.86787 * 359.59339 * 4 3 2 15 15 C 1.50696 * 126.20816 * 180.26756 * 14 4 3 16 16 C 1.35651 * 107.58209 * 0.23961 * 14 4 3 17 17 O 1.36175 * 126.06327 * 180.02562 * 16 14 4 18 18 C 1.34847 * 117.00147 * 90.00175 * 17 16 14 19 19 O 1.21630 * 119.99853 * 0.02562 * 18 17 16 20 20 C 1.46543 * 120.00323 * 179.97438 * 18 17 16 21 21 O 1.35360 * 126.64789 * 359.68605 * 20 18 17 22 22 C 1.33666 * 107.68222 * 179.89718 * 21 20 18 23 23 N 1.30636 * 109.16337 * 0.37496 * 22 21 20 24 24 C 1.33651 * 109.01127 * 359.76444 * 23 22 21 25 25 C 1.50702 * 126.27764 * 179.97438 * 24 23 22 26 26 C 1.53001 * 117.49730 * 8.75250 * 25 24 23 27 27 C 1.52992 * 117.50052 * 300.09148 * 25 24 23 28 28 H 1.09002 * 109.46691 * 270.27324 * 1 2 3 29 29 H 1.08995 * 109.47022 * 30.27865 * 1 2 3 30 30 H 1.09002 * 109.46984 * 150.27669 * 1 2 3 31 31 H 1.09004 * 109.47166 * 149.68957 * 5 4 3 32 32 H 1.08994 * 109.47507 * 29.68663 * 5 4 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.47461 * 89.99906 * 15 14 4 35 35 H 1.09001 * 109.46987 * 209.99794 * 15 14 4 36 36 H 1.09007 * 109.46694 * 329.99364 * 15 14 4 37 37 H 1.07996 * 125.41556 * 180.14259 * 22 21 20 38 38 H 1.09003 * 115.54863 * 154.42100 * 25 24 23 39 39 H 1.08991 * 117.49822 * 359.97438 * 26 25 24 40 40 H 1.09002 * 117.49579 * 145.02023 * 26 25 24 41 41 H 1.09005 * 117.50335 * 214.97801 * 27 25 24 42 42 H 1.08997 * 117.50029 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0608 0.0000 4 7 3.6090 0.6397 -0.0039 5 6 4.7874 1.5099 -0.0082 6 6 5.1917 1.8011 -1.4305 7 1 4.6269 1.3804 -2.2493 8 6 6.2787 2.6098 -1.6864 9 7 6.9662 3.1224 -0.6893 10 14 6.7751 2.9769 -3.4494 11 1 5.6529 3.6524 -4.1492 12 1 7.9668 3.8630 -3.4538 13 1 7.1006 1.7069 -4.1469 14 6 3.6179 -0.7182 0.0029 15 6 4.8396 -1.6003 0.0075 16 6 2.3275 -1.1364 0.0054 17 8 1.9043 -2.4307 0.0126 18 6 1.7142 -3.0060 1.2172 19 8 1.9198 -2.3707 2.2338 20 6 1.2589 -4.3964 1.3016 21 8 0.9841 -5.2210 0.2640 22 6 0.6031 -6.3978 0.7704 23 7 0.6239 -6.3302 2.0749 24 6 1.0241 -5.1088 2.4412 25 6 1.1858 -4.6098 3.8540 26 6 1.0651 -5.6348 4.9834 27 6 -0.0533 -4.6157 4.7514 28 1 -0.3633 0.0049 1.0277 29 1 -0.3633 0.8874 -0.5181 30 1 -0.3633 -0.8925 -0.5095 31 1 5.6084 1.0124 0.5082 32 1 4.5510 2.4442 0.5009 33 1 7.7312 3.6910 -0.8694 34 1 5.1341 -1.8079 1.0362 35 1 4.6132 -2.5372 -0.5016 36 1 5.6553 -1.0940 -0.5089 37 1 0.3192 -7.2652 0.1931 38 1 1.8994 -3.7965 3.9865 39 1 0.8683 -6.6699 4.7046 40 1 1.6989 -5.4957 5.8592 41 1 -0.1548 -3.8066 5.4748 42 1 -0.9855 -4.9801 4.3200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646652714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:28 Heat of formation + Delta-G solvation = 47.448728 kcal Electronic energy + Delta-G solvation = -27941.694097 eV Core-core repulsion = 23891.920851 eV Total energy + Delta-G solvation = -4049.773246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.79243 -41.24434 -39.69925 -37.77853 -36.57323 -34.73427 -34.05495 -32.62565 -31.25897 -30.64641 -29.11766 -26.87432 -26.03436 -25.08502 -24.03309 -22.95025 -22.56928 -21.86238 -20.69537 -19.73112 -19.29641 -18.37509 -17.36544 -17.16367 -16.97649 -16.70088 -15.62591 -15.61597 -15.10539 -14.96856 -14.61023 -14.38860 -13.95611 -13.69244 -13.36660 -13.01358 -12.81439 -12.57776 -12.33716 -12.19111 -12.13341 -12.01954 -11.76857 -11.72890 -11.61780 -11.25137 -11.14165 -11.08402 -10.98343 -10.86111 -10.74655 -10.44462 -10.33990 -9.85719 -9.81947 -9.18151 -8.71045 -8.41949 -7.81588 -6.33330 -4.41819 0.40399 1.89669 2.00918 2.38643 2.64336 2.71355 3.19244 3.20413 3.23654 3.29656 3.49553 3.59570 3.72515 4.13693 4.23786 4.61637 4.74960 4.83783 5.00381 5.00561 5.02770 5.15540 5.22654 5.32368 5.43652 5.51368 5.58240 5.71141 5.82054 5.85481 5.88098 5.90557 5.97271 6.03661 6.06162 6.24144 6.40967 6.47911 6.82832 6.91381 7.11131 7.19516 7.55016 7.74565 7.77779 7.95778 8.35885 8.63994 9.25099 10.74408 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019912 B = 0.002745 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.875359 B =10199.378263 C =10282.104911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.062 3.938 3 N -0.276 5.276 4 N -0.313 5.313 5 C 0.258 3.742 6 C -0.542 4.542 7 H 0.065 0.935 8 C 0.068 3.932 9 N -0.890 5.890 10 Si 0.908 3.092 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.273 1.273 14 C 0.111 3.889 15 C -0.095 4.095 16 C -0.108 4.108 17 O -0.239 6.239 18 C 0.535 3.465 19 O -0.462 6.462 20 C -0.083 4.083 21 O -0.175 6.175 22 C 0.210 3.790 23 N -0.492 5.492 24 C 0.121 3.879 25 C -0.098 4.098 26 C -0.159 4.159 27 C -0.156 4.156 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.270 0.730 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.260 0.740 38 H 0.140 0.860 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 -18.990 5.860 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 N -0.100 5.100 4 N -0.094 5.094 5 C 0.141 3.859 6 C -0.581 4.581 7 H 0.084 0.916 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.735 3.265 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.199 1.199 14 C -0.023 4.023 15 C -0.153 4.153 16 C -0.162 4.162 17 O -0.150 6.150 18 C 0.378 3.622 19 O -0.348 6.348 20 C -0.137 4.137 21 O -0.060 6.060 22 C -0.015 4.015 23 N -0.221 5.221 24 C -0.002 4.002 25 C -0.117 4.117 26 C -0.196 4.196 27 C -0.193 4.193 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.276 0.724 38 H 0.158 0.842 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.583 -17.734 6.521 22.162 hybrid contribution 0.536 -0.149 -1.542 1.639 sum -11.046 -17.883 4.980 21.602 Atomic orbital electron populations 1.20087 0.87175 1.02989 1.02444 1.22258 0.96887 0.89725 1.01484 1.77385 0.87344 1.21519 1.23781 1.49378 1.06076 1.03568 1.50343 1.19818 0.77440 0.89373 0.99296 1.21259 1.13725 1.32026 0.91072 0.91631 1.24929 0.95584 0.94811 0.98312 1.69910 1.19166 1.32345 1.31267 0.86379 0.78088 0.78536 0.83502 1.19864 1.20875 1.19863 1.21035 0.95710 0.86419 0.99128 1.20464 0.94061 0.97758 1.03028 1.17578 0.90780 0.81416 1.26413 1.84859 1.76358 1.24632 1.29129 1.19684 0.75075 0.83515 0.83910 1.90922 1.46461 1.61290 1.36156 1.21579 1.14421 0.91762 0.85909 1.84610 1.63370 1.21886 1.36118 1.28415 0.95251 0.88274 0.89564 1.70291 1.19697 1.19955 1.12162 1.21044 0.96014 0.88296 0.94856 1.20604 1.03993 1.02995 0.84096 1.23013 1.01809 0.96333 0.98465 1.22986 0.92818 1.02133 1.01403 0.91058 0.90658 0.91028 0.92637 0.92389 0.92042 0.90567 0.90394 0.89008 0.72429 0.84216 0.87689 0.88089 0.87791 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.44 36.01 0.38 -0.67 16 2 C 0.06 1.26 7.22 -82.29 -0.59 0.67 16 3 N -0.28 -6.41 12.57 33.73 0.42 -5.99 16 4 N -0.31 -7.38 3.62 -58.04 -0.21 -7.59 16 5 C 0.26 6.52 5.84 -5.20 -0.03 6.49 16 6 C -0.54 -14.67 9.39 -34.44 -0.32 -15.00 16 7 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 8 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 10 Si 0.91 20.78 29.54 -169.99 -5.02 15.75 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 C 0.11 2.32 6.97 -81.77 -0.57 1.75 16 15 C -0.09 -1.64 9.89 36.00 0.36 -1.28 16 16 C -0.11 -2.17 5.36 -39.78 -0.21 -2.38 16 17 O -0.24 -4.23 10.14 -26.95 -0.27 -4.50 16 18 C 0.54 8.73 7.88 34.08 0.27 9.00 16 19 O -0.46 -8.34 14.65 -19.37 -0.28 -8.62 16 20 C -0.08 -1.13 7.25 -36.89 -0.27 -1.40 16 21 O -0.17 -1.98 10.79 4.35 0.05 -1.94 16 22 C 0.21 1.66 13.21 52.25 0.69 2.35 16 23 N -0.49 -5.22 10.88 -10.87 -0.12 -5.34 16 24 C 0.12 1.50 6.67 -82.45 -0.55 0.95 16 25 C -0.10 -1.12 5.60 -91.77 -0.51 -1.64 16 26 C -0.16 -1.43 10.16 -26.69 -0.27 -1.70 16 27 C -0.16 -1.46 10.24 -26.70 -0.27 -1.73 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.39 7.69 -51.93 -0.40 0.99 16 32 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.65 7.76 -51.93 -0.40 1.25 16 37 H 0.26 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.14 1.77 6.65 -51.93 -0.35 1.42 16 39 H 0.10 0.95 7.92 -51.93 -0.41 0.54 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -32.45 375.83 -6.38 -38.84 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.33 Total: 0.51 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -2.01 Total: -2.87 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.83 Total: -42.83 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.51 Total: -15.06 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.45 -6.38 -38.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646652714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.284 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds