Wall clock time and date at job start Tue Mar 31 2020 15:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30841 * 125.83036 * 2 1 4 4 N 1.40084 * 108.33703 * 180.16851 * 3 2 1 5 5 C 1.46491 * 126.06337 * 179.85671 * 4 3 2 6 6 C 1.50702 * 109.46957 * 269.68691 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.35792 * 107.86787 * 359.59339 * 4 3 2 15 15 C 1.50696 * 126.20816 * 180.26756 * 14 4 3 16 16 C 1.35651 * 107.58209 * 0.23961 * 14 4 3 17 17 O 1.36175 * 126.06327 * 180.02562 * 16 14 4 18 18 C 1.34847 * 117.00147 * 90.00175 * 17 16 14 19 19 O 1.21630 * 119.99853 * 0.02562 * 18 17 16 20 20 C 1.46543 * 120.00323 * 179.97438 * 18 17 16 21 21 O 1.35360 * 126.64789 * 359.68605 * 20 18 17 22 22 C 1.33666 * 107.68222 * 179.89718 * 21 20 18 23 23 N 1.30636 * 109.16337 * 0.37496 * 22 21 20 24 24 C 1.33651 * 109.01127 * 359.76444 * 23 22 21 25 25 C 1.50702 * 126.27764 * 179.97438 * 24 23 22 26 26 C 1.53001 * 117.49730 * 8.75250 * 25 24 23 27 27 C 1.52992 * 117.50052 * 300.09148 * 25 24 23 28 28 H 1.09002 * 109.46691 * 270.27324 * 1 2 3 29 29 H 1.08995 * 109.47022 * 30.27865 * 1 2 3 30 30 H 1.09002 * 109.46984 * 150.27669 * 1 2 3 31 31 H 1.09004 * 109.47166 * 149.68957 * 5 4 3 32 32 H 1.08994 * 109.47507 * 29.68663 * 5 4 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.47461 * 89.99906 * 15 14 4 35 35 H 1.09001 * 109.46987 * 209.99794 * 15 14 4 36 36 H 1.09007 * 109.46694 * 329.99364 * 15 14 4 37 37 H 1.07996 * 125.41556 * 180.14259 * 22 21 20 38 38 H 1.09003 * 115.54863 * 154.42100 * 25 24 23 39 39 H 1.08991 * 117.49822 * 359.97438 * 26 25 24 40 40 H 1.09002 * 117.49579 * 145.02023 * 26 25 24 41 41 H 1.09005 * 117.50335 * 214.97801 * 27 25 24 42 42 H 1.08997 * 117.50029 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0608 0.0000 4 7 3.6090 0.6397 -0.0039 5 6 4.7874 1.5099 -0.0082 6 6 5.1917 1.8011 -1.4305 7 1 4.6269 1.3804 -2.2493 8 6 6.2787 2.6098 -1.6864 9 7 6.9662 3.1224 -0.6893 10 14 6.7751 2.9769 -3.4494 11 1 5.6529 3.6524 -4.1492 12 1 7.9668 3.8630 -3.4538 13 1 7.1006 1.7069 -4.1469 14 6 3.6179 -0.7182 0.0029 15 6 4.8396 -1.6003 0.0075 16 6 2.3275 -1.1364 0.0054 17 8 1.9043 -2.4307 0.0126 18 6 1.7142 -3.0060 1.2172 19 8 1.9198 -2.3707 2.2338 20 6 1.2589 -4.3964 1.3016 21 8 0.9841 -5.2210 0.2640 22 6 0.6031 -6.3978 0.7704 23 7 0.6239 -6.3302 2.0749 24 6 1.0241 -5.1088 2.4412 25 6 1.1858 -4.6098 3.8540 26 6 1.0651 -5.6348 4.9834 27 6 -0.0533 -4.6157 4.7514 28 1 -0.3633 0.0049 1.0277 29 1 -0.3633 0.8874 -0.5181 30 1 -0.3633 -0.8925 -0.5095 31 1 5.6084 1.0124 0.5082 32 1 4.5510 2.4442 0.5009 33 1 7.7312 3.6910 -0.8694 34 1 5.1341 -1.8079 1.0362 35 1 4.6132 -2.5372 -0.5016 36 1 5.6553 -1.0940 -0.5089 37 1 0.3192 -7.2652 0.1931 38 1 1.8994 -3.7965 3.9865 39 1 0.8683 -6.6699 4.7046 40 1 1.6989 -5.4957 5.8592 41 1 -0.1548 -3.8066 5.4748 42 1 -0.9855 -4.9801 4.3200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646652714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:28 Heat of formation + Delta-G solvation = 26.729536 kcal Electronic energy + Delta-G solvation = -27942.592549 eV Core-core repulsion = 23891.920851 eV Total energy + Delta-G solvation = -4050.671697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.62599 -42.76489 -41.13626 -38.65465 -37.86043 -35.92646 -35.54054 -34.40409 -32.66774 -31.80637 -30.72552 -28.31135 -27.79973 -26.28460 -24.86632 -24.61929 -23.38885 -23.00120 -21.57892 -21.16280 -20.89822 -19.54072 -18.92521 -18.63134 -18.10039 -17.79380 -17.22802 -16.57567 -16.45621 -16.22390 -16.05560 -15.70683 -15.15745 -14.85636 -14.78533 -14.53890 -14.30360 -14.21253 -13.72862 -13.46220 -13.34401 -13.21739 -13.14443 -13.02516 -12.91425 -12.72844 -12.56681 -12.42923 -12.31775 -12.28729 -11.99491 -11.79681 -11.53451 -11.40684 -11.29564 -10.77264 -10.11720 -10.07596 -9.46116 -8.38524 -6.56199 -0.54571 0.59733 0.97067 1.19651 1.37042 1.39007 1.45355 1.47334 1.53691 1.58771 2.21815 2.31927 2.85321 2.92754 2.95338 3.33059 3.46123 3.58647 3.82037 3.91166 4.01160 4.07115 4.13847 4.33076 4.36270 4.44265 4.51049 4.56403 4.65726 4.72676 4.73698 4.76888 4.81075 4.89905 4.96909 5.03393 5.12297 5.15319 5.19007 5.25023 5.47376 5.62753 5.72404 5.97749 6.33905 6.52136 6.60884 6.71401 7.15081 8.68824 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019912 B = 0.002745 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.875359 B =10199.378263 C =10282.104911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.063 3.937 3 N -0.318 5.318 4 N -0.339 5.339 5 C 0.275 3.725 6 C -0.558 4.558 7 H 0.053 0.947 8 C 0.025 3.975 9 N -0.917 5.917 10 Si 0.973 3.027 11 H -0.274 1.274 12 H -0.273 1.273 13 H -0.264 1.264 14 C 0.098 3.902 15 C -0.090 4.090 16 C -0.108 4.108 17 O -0.240 6.240 18 C 0.539 3.461 19 O -0.489 6.489 20 C -0.121 4.121 21 O -0.185 6.185 22 C 0.248 3.752 23 N -0.515 5.515 24 C 0.137 3.863 25 C -0.128 4.128 26 C -0.141 4.141 27 C -0.148 4.148 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.030 0.970 33 H 0.275 0.725 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.318 0.682 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.004 -21.790 5.184 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 N -0.142 5.142 4 N -0.120 5.120 5 C 0.156 3.844 6 C -0.596 4.596 7 H 0.071 0.929 8 C -0.177 4.177 9 N -0.555 5.555 10 Si 0.796 3.204 11 H -0.200 1.200 12 H -0.197 1.197 13 H -0.188 1.188 14 C -0.035 4.035 15 C -0.148 4.148 16 C -0.161 4.161 17 O -0.151 6.151 18 C 0.385 3.615 19 O -0.377 6.377 20 C -0.174 4.174 21 O -0.071 6.071 22 C 0.025 3.975 23 N -0.243 5.243 24 C 0.014 3.986 25 C -0.147 4.147 26 C -0.178 4.178 27 C -0.185 4.185 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.333 0.667 38 H 0.139 0.861 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.767 -20.562 5.861 24.903 hybrid contribution 0.767 0.496 -1.266 1.561 sum -12.001 -20.066 4.595 23.828 Atomic orbital electron populations 1.20268 0.83861 1.04541 1.03766 1.23049 0.98919 0.89120 0.99248 1.77308 0.87530 1.23334 1.26017 1.49137 1.05819 1.04338 1.52679 1.19356 0.78170 0.88570 0.98267 1.21389 1.14150 1.32667 0.91439 0.92869 1.25755 0.95256 0.94234 1.02458 1.69998 1.19536 1.32648 1.33277 0.85378 0.77830 0.78743 0.78407 1.19966 1.19716 1.18826 1.21643 0.97503 0.85777 0.98534 1.20545 0.92362 0.97860 1.04050 1.17623 0.90486 0.82521 1.25510 1.84834 1.76549 1.23360 1.30359 1.19903 0.74339 0.84467 0.82822 1.90907 1.47926 1.62344 1.36564 1.21053 1.18249 0.91130 0.86959 1.84610 1.64062 1.22719 1.35705 1.29844 0.90471 0.87979 0.89195 1.70372 1.21322 1.18981 1.13638 1.21237 0.93952 0.88642 0.94805 1.20628 1.05312 1.04020 0.84750 1.23084 1.01258 0.95885 0.97540 1.23066 0.92337 1.02546 1.00556 0.89703 0.89509 0.89025 0.93032 0.95231 0.91585 0.89225 0.88107 0.90037 0.66725 0.86138 0.87396 0.86589 0.86850 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.96 10.44 71.24 0.74 -1.22 16 2 C 0.06 2.58 7.22 43.17 0.31 2.89 16 3 N -0.32 -15.32 12.57 -47.20 -0.59 -15.91 16 4 N -0.34 -16.71 3.62 -337.52 -1.22 -17.93 16 5 C 0.27 14.65 5.84 85.64 0.50 15.15 16 6 C -0.56 -31.21 9.39 25.60 0.24 -30.97 16 7 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 8 C 0.02 1.33 5.46 84.66 0.46 1.79 16 9 N -0.92 -51.73 13.29 21.45 0.28 -51.44 16 10 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 14 C 0.10 4.21 6.97 41.35 0.29 4.50 16 15 C -0.09 -3.16 9.89 71.23 0.70 -2.45 16 16 C -0.11 -4.37 5.36 22.14 0.12 -4.25 16 17 O -0.24 -8.45 10.14 -3.21 -0.03 -8.49 16 18 C 0.54 17.62 7.88 69.99 0.55 18.17 16 19 O -0.49 -18.09 14.65 19.41 0.28 -17.81 16 20 C -0.12 -3.17 7.25 24.01 0.17 -3.00 16 21 O -0.18 -3.75 10.79 -7.26 -0.08 -3.83 16 22 C 0.25 2.96 13.21 130.42 1.72 4.68 16 23 N -0.51 -9.46 10.88 -303.07 -3.30 -12.76 16 24 C 0.14 3.21 6.67 41.86 0.28 3.49 16 25 C -0.13 -2.84 5.60 -11.54 -0.06 -2.91 16 26 C -0.14 -2.27 10.16 30.62 0.31 -1.96 16 27 C -0.15 -2.54 10.24 30.62 0.31 -2.23 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.05 2.73 7.69 -2.38 -0.02 2.71 16 32 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.28 14.49 8.31 -92.70 -0.77 13.72 16 34 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.08 3.01 7.76 -2.38 -0.02 2.99 16 37 H 0.32 -0.70 8.06 -2.91 -0.02 -0.72 16 38 H 0.12 3.14 6.65 -2.39 -0.02 3.12 16 39 H 0.11 1.70 7.92 -2.39 -0.02 1.68 16 40 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -73.44 375.83 5.08 -68.35 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.06 Total: 13.37 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 6.66 Total: 1.69 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -4.83 Total: -98.04 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: 0.17 Total: -30.12 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -73.44 5.08 -68.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646652714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.083 kcal (2) G-P(sol) polarization free energy of solvation -73.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds