Wall clock time and date at job start Tue Mar 31 2020 15:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35420 * 116.99707 * 2 1 4 4 N 1.32234 * 119.80059 * 359.97438 * 3 2 1 5 5 C 1.31884 * 121.80459 * 180.02562 * 4 3 2 6 6 C 1.38374 * 121.19501 * 0.02562 * 5 4 3 7 7 C 1.38315 * 119.46974 * 359.97023 * 6 5 4 8 8 C 1.40049 * 118.34159 * 0.03123 * 7 6 5 9 9 C 1.47384 * 120.60374 * 180.02562 * 8 7 6 10 10 O 1.21533 * 120.00257 * 179.97438 * 9 8 7 11 11 O 1.34710 * 120.00072 * 359.97438 * 9 8 7 12 12 C 1.36185 * 117.00162 * 179.97438 * 11 9 8 13 13 C 1.40154 * 126.06611 * 269.68911 * 12 11 9 14 14 C 1.50694 * 125.83069 * 0.02562 * 13 12 11 15 15 N 1.30844 * 108.33929 * 179.88037 * 13 12 11 16 16 N 1.40080 * 108.33407 * 0.38107 * 15 13 12 17 17 C 1.46497 * 126.06333 * 179.78221 * 16 15 13 18 18 C 1.50700 * 109.46732 * 269.97455 * 17 16 15 19 19 H 1.07999 * 120.00473 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99891 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99920 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47381 * 60.00082 * 22 20 18 24 24 H 1.48505 * 109.47101 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47216 * 299.99969 * 22 20 18 26 26 C 1.35647 * 126.05783 * 89.99974 * 12 11 9 27 27 C 1.50694 * 126.21323 * 0.02562 * 26 12 11 28 28 H 1.08997 * 109.47717 * 299.99899 * 1 2 3 29 29 H 1.09004 * 109.47270 * 60.00754 * 1 2 3 30 30 H 1.09003 * 109.46564 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.40494 * 180.02562 * 5 4 3 32 32 H 1.08002 * 120.26322 * 179.97438 * 6 5 4 33 33 H 1.07999 * 120.83153 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.47574 * 90.00137 * 14 13 12 35 35 H 1.08999 * 109.47358 * 210.00370 * 14 13 12 36 36 H 1.08999 * 109.47138 * 329.99892 * 14 13 12 37 37 H 1.09006 * 109.47490 * 29.97064 * 17 16 15 38 38 H 1.08993 * 109.47485 * 149.97487 * 17 16 15 39 39 H 0.97002 * 120.00129 * 179.97438 * 21 20 18 40 40 H 1.09005 * 109.47495 * 89.97551 * 27 26 12 41 41 H 1.09009 * 109.47219 * 209.97382 * 27 26 12 42 42 H 1.09000 * 109.47158 * 329.97255 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2066 0.0000 4 7 1.3196 2.3131 -0.0005 5 6 1.8769 3.5084 -0.0010 6 6 3.2525 3.6579 -0.0016 7 6 4.0591 2.5343 -0.0010 8 6 3.4454 1.2754 -0.0005 9 6 4.2569 0.0451 0.0007 10 8 3.7130 -1.0417 0.0016 11 8 5.6017 0.1252 0.0009 12 6 6.2910 -1.0493 0.0026 13 6 6.7138 -1.7562 1.1365 14 6 6.4827 -1.3468 2.5682 15 7 7.3406 -2.8340 0.7397 16 7 7.3480 -2.8490 -0.6610 17 6 7.9520 -3.8794 -1.5093 18 6 9.3842 -3.5130 -1.8019 19 1 9.8028 -2.6038 -1.3962 20 6 10.1602 -4.3385 -2.5876 21 7 9.6508 -5.4460 -3.0813 22 14 11.9353 -3.8840 -2.9509 23 1 12.6920 -3.7861 -1.6769 24 1 12.5477 -4.9286 -3.8107 25 1 11.9776 -2.5764 -3.6535 26 6 6.6954 -1.7393 -1.0930 27 6 6.4638 -1.3452 -2.5290 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 1.2481 4.3865 -0.0010 32 1 3.6928 4.6441 -0.0024 33 1 5.1352 2.6254 -0.0018 34 1 5.5410 -1.7686 2.9194 35 1 7.2997 -1.7161 3.1881 36 1 6.4405 -0.2596 2.6329 37 1 7.9206 -4.8391 -0.9935 38 1 7.3970 -3.9513 -2.4446 39 1 10.1966 -6.0266 -3.6343 40 1 7.2942 -0.7300 -2.8754 41 1 6.3941 -2.2418 -3.1451 42 1 5.5355 -0.7790 -2.6052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646653138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:12 Heat of formation + Delta-G solvation = -1.190059 kcal Electronic energy + Delta-G solvation = -27998.298397 eV Core-core repulsion = 23946.416015 eV Total energy + Delta-G solvation = -4051.882382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.34481 -40.81373 -39.36172 -38.16178 -36.30500 -33.99725 -33.09126 -32.57055 -31.24057 -30.72558 -29.05561 -27.61241 -26.66501 -25.96287 -25.03371 -23.34861 -22.82598 -21.72391 -19.50366 -19.18248 -18.70855 -17.77491 -17.44374 -16.85200 -16.59231 -16.37411 -15.53606 -15.40530 -15.02613 -14.57503 -14.41816 -14.35232 -13.96605 -13.71653 -13.30861 -13.20937 -12.95396 -12.82328 -12.68005 -12.49190 -12.04373 -11.99849 -11.97656 -11.69924 -11.55027 -11.48616 -11.06399 -10.93839 -10.79577 -10.48870 -10.32018 -10.29324 -10.07176 -9.79776 -9.70015 -8.89078 -8.67451 -8.33871 -7.69475 -6.29509 -4.37680 0.32064 0.92265 2.31200 2.60576 2.70877 2.80046 3.21404 3.25585 3.26557 3.34444 3.50559 3.56418 3.95292 4.26668 4.47576 4.53693 4.73886 4.91418 5.03164 5.06926 5.08099 5.09441 5.21791 5.38175 5.40909 5.52791 5.61115 5.73901 5.75646 5.92187 5.96676 5.99464 6.11044 6.14689 6.28433 6.50183 6.63877 6.92240 6.94505 7.00207 7.28696 7.38848 7.60118 7.81734 7.84207 8.22547 8.44720 8.68034 9.28774 10.78257 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.002784 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.618969 B =10053.421126 C =10164.025849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.272 6.272 3 C 0.375 3.625 4 N -0.547 5.547 5 C 0.170 3.830 6 C -0.226 4.226 7 C 0.016 3.984 8 C -0.192 4.192 9 C 0.488 3.512 10 O -0.468 6.468 11 O -0.252 6.252 12 C -0.100 4.100 13 C 0.059 3.941 14 C -0.067 4.067 15 N -0.278 5.278 16 N -0.315 5.315 17 C 0.258 3.742 18 C -0.540 4.540 19 H 0.065 0.935 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.105 3.895 27 C -0.084 4.084 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.166 0.834 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.269 0.731 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.626 18.640 5.091 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.176 6.176 3 C 0.196 3.804 4 N -0.272 5.272 5 C 0.013 3.987 6 C -0.246 4.246 7 C -0.010 4.010 8 C -0.196 4.196 9 C 0.331 3.669 10 O -0.354 6.354 11 O -0.164 6.164 12 C -0.154 4.154 13 C -0.107 4.107 14 C -0.125 4.125 15 N -0.103 5.103 16 N -0.096 5.096 17 C 0.141 3.859 18 C -0.578 4.578 19 H 0.083 0.917 20 C -0.137 4.137 21 N -0.528 5.528 22 Si 0.735 3.265 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.199 1.199 26 C -0.028 4.028 27 C -0.142 4.142 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.183 0.817 32 H 0.164 0.836 33 H 0.176 0.824 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.873 16.524 5.244 23.505 hybrid contribution 1.155 0.955 -0.565 1.601 sum -14.718 17.479 4.679 23.324 Atomic orbital electron populations 1.22985 0.77190 1.03520 1.02329 1.86546 1.22677 1.22967 1.85385 1.19861 0.87813 0.85373 0.87383 1.67536 1.39964 0.98582 1.21100 1.22730 0.93230 0.93711 0.88981 1.22004 0.94598 1.00142 1.07898 1.21903 1.01786 0.89808 0.87479 1.19206 0.90277 0.93388 1.16714 1.21280 0.82601 0.88603 0.74432 1.90895 1.72512 1.29065 1.42883 1.84715 1.17586 1.30633 1.83455 1.17528 1.11498 0.94440 0.91927 1.22243 0.99332 0.92936 0.96145 1.20060 1.02230 1.01123 0.89108 1.77361 1.22840 1.19466 0.90596 1.49320 1.39253 1.17180 1.03831 1.19788 0.93525 0.84633 0.87934 1.21256 0.95239 1.08826 1.32521 0.91661 1.24931 0.99256 0.94491 0.95015 1.69911 1.37361 1.12062 1.33461 0.86382 0.83361 0.78247 0.78513 1.19891 1.20911 1.19887 1.21013 0.96389 0.89129 0.96255 1.20345 1.02100 1.02549 0.89248 0.92139 0.92112 0.88209 0.81695 0.83564 0.82388 0.91197 0.90831 0.91051 0.92503 0.92729 0.92090 0.89704 0.90267 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.38 101.05 1.05 1.39 16 2 O -0.27 -3.86 8.58 -39.73 -0.34 -4.20 16 3 C 0.38 4.93 7.51 -16.59 -0.12 4.80 16 4 N -0.55 -5.85 9.21 -12.96 -0.12 -5.97 16 5 C 0.17 1.26 11.17 -17.48 -0.20 1.07 16 6 C -0.23 -1.55 10.09 -39.50 -0.40 -1.95 16 7 C 0.02 0.15 9.73 -38.87 -0.38 -0.23 16 8 C -0.19 -2.54 5.90 -104.71 -0.62 -3.16 16 9 C 0.49 8.27 7.84 34.45 0.27 8.54 16 10 O -0.47 -9.53 14.97 -26.59 -0.40 -9.93 16 11 O -0.25 -4.37 9.45 -25.62 -0.24 -4.61 16 12 C -0.10 -2.05 5.35 -39.79 -0.21 -2.26 16 13 C 0.06 1.23 7.22 -82.30 -0.59 0.64 16 14 C -0.07 -1.05 10.44 36.00 0.38 -0.67 16 15 N -0.28 -6.64 12.57 33.73 0.42 -6.21 16 16 N -0.32 -7.63 3.62 -58.03 -0.21 -7.84 16 17 C 0.26 6.69 6.01 -5.20 -0.03 6.66 16 18 C -0.54 -14.83 9.39 -34.44 -0.32 -15.15 16 19 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 20 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -25.01 13.29 55.43 0.74 -24.28 16 22 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 C 0.11 2.27 6.97 -81.77 -0.57 1.70 16 27 C -0.08 -1.50 10.10 36.00 0.36 -1.14 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.15 0.54 8.06 -52.49 -0.42 0.11 16 33 H 0.16 1.27 7.70 -52.49 -0.40 0.86 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.05 1.40 7.09 -51.93 -0.37 1.03 16 39 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.08 1.42 7.12 -51.92 -0.37 1.05 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -34.22 373.43 -6.36 -40.59 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.33 Total: -1.06 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.49 Total: 1.95 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.83 Total: -44.29 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.98 Total: -18.74 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.22 -6.36 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646653138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.395 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds