Wall clock time and date at job start Tue Mar 31 2020 15:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35420 * 116.99707 * 2 1 4 4 N 1.32234 * 119.80059 * 359.97438 * 3 2 1 5 5 C 1.31884 * 121.80459 * 180.02562 * 4 3 2 6 6 C 1.38374 * 121.19501 * 0.02562 * 5 4 3 7 7 C 1.38315 * 119.46974 * 359.97023 * 6 5 4 8 8 C 1.40049 * 118.34159 * 0.03123 * 7 6 5 9 9 C 1.47384 * 120.60374 * 180.02562 * 8 7 6 10 10 O 1.21533 * 120.00257 * 179.97438 * 9 8 7 11 11 O 1.34710 * 120.00072 * 359.97438 * 9 8 7 12 12 C 1.36185 * 117.00162 * 179.97438 * 11 9 8 13 13 C 1.40154 * 126.06611 * 269.68911 * 12 11 9 14 14 C 1.50694 * 125.83069 * 0.02562 * 13 12 11 15 15 N 1.30844 * 108.33929 * 179.88037 * 13 12 11 16 16 N 1.40080 * 108.33407 * 0.38107 * 15 13 12 17 17 C 1.46497 * 126.06333 * 179.78221 * 16 15 13 18 18 C 1.50700 * 109.46732 * 269.97455 * 17 16 15 19 19 H 1.07999 * 120.00473 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99891 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99920 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47381 * 60.00082 * 22 20 18 24 24 H 1.48505 * 109.47101 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47216 * 299.99969 * 22 20 18 26 26 C 1.35647 * 126.05783 * 89.99974 * 12 11 9 27 27 C 1.50694 * 126.21323 * 0.02562 * 26 12 11 28 28 H 1.08997 * 109.47717 * 299.99899 * 1 2 3 29 29 H 1.09004 * 109.47270 * 60.00754 * 1 2 3 30 30 H 1.09003 * 109.46564 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.40494 * 180.02562 * 5 4 3 32 32 H 1.08002 * 120.26322 * 179.97438 * 6 5 4 33 33 H 1.07999 * 120.83153 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.47574 * 90.00137 * 14 13 12 35 35 H 1.08999 * 109.47358 * 210.00370 * 14 13 12 36 36 H 1.08999 * 109.47138 * 329.99892 * 14 13 12 37 37 H 1.09006 * 109.47490 * 29.97064 * 17 16 15 38 38 H 1.08993 * 109.47485 * 149.97487 * 17 16 15 39 39 H 0.97002 * 120.00129 * 179.97438 * 21 20 18 40 40 H 1.09005 * 109.47495 * 89.97551 * 27 26 12 41 41 H 1.09009 * 109.47219 * 209.97382 * 27 26 12 42 42 H 1.09000 * 109.47158 * 329.97255 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2066 0.0000 4 7 1.3196 2.3131 -0.0005 5 6 1.8769 3.5084 -0.0010 6 6 3.2525 3.6579 -0.0016 7 6 4.0591 2.5343 -0.0010 8 6 3.4454 1.2754 -0.0005 9 6 4.2569 0.0451 0.0007 10 8 3.7130 -1.0417 0.0016 11 8 5.6017 0.1252 0.0009 12 6 6.2910 -1.0493 0.0026 13 6 6.7138 -1.7562 1.1365 14 6 6.4827 -1.3468 2.5682 15 7 7.3406 -2.8340 0.7397 16 7 7.3480 -2.8490 -0.6610 17 6 7.9520 -3.8794 -1.5093 18 6 9.3842 -3.5130 -1.8019 19 1 9.8028 -2.6038 -1.3962 20 6 10.1602 -4.3385 -2.5876 21 7 9.6508 -5.4460 -3.0813 22 14 11.9353 -3.8840 -2.9509 23 1 12.6920 -3.7861 -1.6769 24 1 12.5477 -4.9286 -3.8107 25 1 11.9776 -2.5764 -3.6535 26 6 6.6954 -1.7393 -1.0930 27 6 6.4638 -1.3452 -2.5290 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 1.2481 4.3865 -0.0010 32 1 3.6928 4.6441 -0.0024 33 1 5.1352 2.6254 -0.0018 34 1 5.5410 -1.7686 2.9194 35 1 7.2997 -1.7161 3.1881 36 1 6.4405 -0.2596 2.6329 37 1 7.9206 -4.8391 -0.9935 38 1 7.3970 -3.9513 -2.4446 39 1 10.1966 -6.0266 -3.6343 40 1 7.2942 -0.7300 -2.8754 41 1 6.3941 -2.2418 -3.1451 42 1 5.5355 -0.7790 -2.6052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646653138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:11 Heat of formation + Delta-G solvation = -23.459006 kcal Electronic energy + Delta-G solvation = -27999.264051 eV Core-core repulsion = 23946.416015 eV Total energy + Delta-G solvation = -4052.848036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.74259 -41.89238 -40.73597 -38.98209 -37.73152 -35.89983 -34.38461 -33.92985 -32.47050 -31.90567 -30.70593 -28.51570 -28.02131 -27.77322 -26.12685 -24.72945 -24.01425 -22.97979 -21.02103 -20.83123 -19.55074 -18.98669 -18.90049 -18.49257 -17.84361 -17.36339 -17.07765 -16.51619 -16.29843 -16.13753 -15.90107 -15.26265 -15.14320 -14.85625 -14.54917 -14.45499 -14.30061 -14.19554 -14.06233 -13.68528 -13.52312 -13.44715 -13.33444 -13.15838 -12.90896 -12.76067 -12.69670 -12.47478 -12.27246 -12.23854 -11.84301 -11.69251 -11.32709 -11.09776 -10.85278 -10.76314 -10.08623 -9.66488 -9.37807 -8.37219 -6.55230 -0.50842 0.21234 0.73040 1.14800 1.37809 1.40223 1.47205 1.48446 1.62494 1.99739 2.15469 2.32877 2.70473 2.93766 3.22810 3.51290 3.62350 3.73245 3.88877 3.95848 4.02326 4.25930 4.34628 4.36765 4.38706 4.47233 4.51489 4.59665 4.67730 4.70282 4.74988 4.78154 4.82558 4.93226 4.97627 5.08305 5.18312 5.30726 5.41113 5.48590 5.73399 5.75858 6.02962 6.13636 6.53505 6.65963 6.74693 6.85902 7.15937 8.70196 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.002784 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.618969 B =10053.421126 C =10164.025849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.307 6.307 3 C 0.359 3.641 4 N -0.557 5.557 5 C 0.177 3.823 6 C -0.206 4.206 7 C 0.017 3.983 8 C -0.223 4.223 9 C 0.492 3.508 10 O -0.513 6.513 11 O -0.242 6.242 12 C -0.101 4.101 13 C 0.059 3.941 14 C -0.064 4.064 15 N -0.322 5.322 16 N -0.341 5.341 17 C 0.275 3.725 18 C -0.556 4.556 19 H 0.055 0.945 20 C 0.022 3.978 21 N -0.919 5.919 22 Si 0.976 3.024 23 H -0.274 1.274 24 H -0.273 1.273 25 H -0.262 1.262 26 C 0.091 3.909 27 C -0.080 4.080 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.210 0.790 32 H 0.190 0.810 33 H 0.172 0.828 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.027 0.973 38 H 0.049 0.951 39 H 0.275 0.725 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 22.604 5.207 28.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.212 6.212 3 C 0.180 3.820 4 N -0.282 5.282 5 C 0.021 3.979 6 C -0.225 4.225 7 C -0.008 4.008 8 C -0.227 4.227 9 C 0.338 3.662 10 O -0.401 6.401 11 O -0.154 6.154 12 C -0.154 4.154 13 C -0.107 4.107 14 C -0.123 4.123 15 N -0.146 5.146 16 N -0.122 5.122 17 C 0.156 3.844 18 C -0.594 4.594 19 H 0.073 0.927 20 C -0.179 4.179 21 N -0.557 5.557 22 Si 0.799 3.201 23 H -0.199 1.199 24 H -0.198 1.198 25 H -0.186 1.186 26 C -0.041 4.041 27 C -0.138 4.138 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.227 0.773 32 H 0.207 0.793 33 H 0.189 0.811 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.045 0.955 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.091 0.909 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.093 20.521 5.363 26.625 hybrid contribution 1.047 -0.081 -0.542 1.181 sum -15.047 20.441 4.821 25.835 Atomic orbital electron populations 1.23150 0.75554 1.04459 1.03008 1.86492 1.24611 1.24434 1.85694 1.20015 0.87904 0.85821 0.88222 1.67640 1.39943 0.98992 1.21618 1.23613 0.94410 0.93725 0.86119 1.22466 0.94069 1.00990 1.04997 1.22171 1.02816 0.89075 0.86713 1.19152 0.90066 0.92966 1.20511 1.21909 0.81902 0.89584 0.72838 1.90873 1.72866 1.31013 1.45384 1.84712 1.18206 1.28905 1.83540 1.17599 1.11405 0.94908 0.91529 1.23059 0.97425 0.91761 0.98459 1.20246 1.03045 1.02791 0.86180 1.77282 1.25088 1.21534 0.90662 1.49091 1.41026 1.18048 1.04072 1.19331 0.93323 0.84158 0.87544 1.21386 0.96138 1.08787 1.33131 0.92701 1.25797 1.03529 0.94154 0.94398 1.70008 1.39073 1.12865 1.33749 0.85342 0.77810 0.78613 0.78366 1.19912 1.19805 1.18645 1.21644 0.95729 0.88484 0.98223 1.20431 1.03553 1.02663 0.87151 0.91313 0.91435 0.87272 0.77344 0.79262 0.81083 0.90347 0.89611 0.88529 0.95525 0.93287 0.91622 0.88232 0.90905 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.38 113.37 1.18 1.80 16 2 O -0.31 -8.92 8.58 -66.33 -0.57 -9.48 16 3 C 0.36 9.18 7.51 85.14 0.64 9.82 16 4 N -0.56 -10.59 9.21 -307.95 -2.83 -13.42 16 5 C 0.18 1.84 11.17 84.72 0.95 2.79 16 6 C -0.21 -1.82 10.09 22.32 0.23 -1.59 16 7 C 0.02 0.28 9.73 22.73 0.22 0.50 16 8 C -0.22 -5.69 5.90 -19.92 -0.12 -5.81 16 9 C 0.49 16.77 7.84 70.23 0.55 17.32 16 10 O -0.51 -21.65 14.97 26.70 0.40 -21.25 16 11 O -0.24 -8.30 9.45 -2.89 -0.03 -8.33 16 12 C -0.10 -4.16 5.35 22.13 0.12 -4.05 16 13 C 0.06 2.50 7.22 43.17 0.31 2.81 16 14 C -0.06 -1.97 10.44 71.23 0.74 -1.23 16 15 N -0.32 -15.96 12.57 -47.21 -0.59 -16.55 16 16 N -0.34 -17.31 3.62 -337.52 -1.22 -18.53 16 17 C 0.27 15.04 6.01 85.63 0.51 15.55 16 18 C -0.56 -31.50 9.39 25.60 0.24 -31.26 16 19 H 0.05 3.16 7.81 -2.91 -0.02 3.13 16 20 C 0.02 1.23 5.46 84.66 0.46 1.70 16 21 N -0.92 -52.62 13.29 21.45 0.28 -52.33 16 22 Si 0.98 42.98 29.54 68.60 2.03 45.00 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 26 C 0.09 4.04 6.97 41.34 0.29 4.32 16 27 C -0.08 -2.89 10.10 71.23 0.72 -2.17 16 28 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 29 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 30 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.21 0.28 8.06 -2.91 -0.02 0.26 16 32 H 0.19 0.10 8.06 -2.91 -0.02 0.08 16 33 H 0.17 2.20 7.70 -2.91 -0.02 2.18 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.05 2.68 7.09 -2.39 -0.02 2.66 16 39 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 40 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 41 H 0.07 2.70 7.12 -2.38 -0.02 2.68 16 42 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -78.77 373.43 5.55 -73.22 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.05 Total: 11.19 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 7.04 Total: 10.49 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -4.37 Total: -100.83 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.20 Total: -39.07 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -78.77 5.55 -73.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646653138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.760 kcal (2) G-P(sol) polarization free energy of solvation -78.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds