Wall clock time and date at job start Tue Mar 31 2020 15:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35494 * 116.99299 * 2 1 4 4 C 1.39164 * 119.50694 * 180.25041 * 3 2 1 5 5 C 1.36947 * 119.39841 * 180.30027 * 4 3 2 6 6 C 1.40317 * 118.46618 * 359.45339 * 5 4 3 7 7 C 1.47486 * 120.50225 * 180.30078 * 6 5 4 8 8 O 1.21519 * 119.99729 * 0.02562 * 7 6 5 9 9 O 1.34697 * 120.00153 * 179.97438 * 7 6 5 10 10 C 1.36187 * 116.99788 * 179.97438 * 9 7 6 11 11 C 1.40159 * 126.06206 * 269.69191 * 10 9 7 12 12 C 1.50700 * 125.83642 * 0.02562 * 11 10 9 13 13 N 1.30844 * 108.33658 * 179.81905 * 11 10 9 14 14 N 1.40080 * 108.33411 * 0.43886 * 13 11 10 15 15 C 1.46498 * 126.06389 * 179.73797 * 14 13 11 16 16 C 1.50702 * 109.47254 * 269.98089 * 15 14 13 17 17 H 1.07997 * 120.00108 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00254 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99691 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47372 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47413 * 119.99749 * 20 18 16 23 23 H 1.48502 * 109.46819 * 239.99316 * 20 18 16 24 24 C 1.35645 * 126.06080 * 90.00420 * 10 9 7 25 25 C 1.50694 * 126.21102 * 359.97438 * 24 10 9 26 26 C 1.39600 * 119.00125 * 0.27809 * 6 5 4 27 27 N 1.31697 * 120.49168 * 0.02562 * 26 6 5 28 28 H 1.08998 * 109.46921 * 60.00589 * 1 2 3 29 29 H 1.09007 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47507 * 300.00421 * 1 2 3 31 31 H 1.08000 * 120.30313 * 0.02606 * 4 3 2 32 32 H 1.08002 * 120.77038 * 179.73434 * 5 4 3 33 33 H 1.09001 * 109.47199 * 89.99234 * 12 11 10 34 34 H 1.08996 * 109.47194 * 210.00197 * 12 11 10 35 35 H 1.09007 * 109.46749 * 329.99713 * 12 11 10 36 36 H 1.08997 * 109.47303 * 29.97664 * 15 14 13 37 37 H 1.08996 * 109.47086 * 149.97864 * 15 14 13 38 38 H 0.96999 * 119.99547 * 180.02562 * 19 18 16 39 39 H 1.09006 * 109.46852 * 89.98154 * 25 24 10 40 40 H 1.09003 * 109.47056 * 209.97200 * 25 24 10 41 41 H 1.08996 * 109.47484 * 329.97842 * 25 24 10 42 42 H 1.08003 * 119.75528 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2073 0.0000 4 6 3.4343 1.2684 -0.0053 5 6 4.0536 2.4898 0.0010 6 6 3.2558 3.6442 0.0008 7 6 3.8756 4.9825 0.0008 8 8 5.0859 5.0915 0.0004 9 8 3.1002 6.0838 0.0001 10 6 3.7365 7.2879 0.0006 11 6 4.1156 8.0202 1.1339 12 6 3.8894 7.6096 2.5662 13 7 4.7036 9.1193 0.7361 14 7 4.7118 9.1325 -0.6646 15 6 5.2704 10.1874 -1.5139 16 6 4.2058 11.2132 -1.8066 17 1 3.2124 11.0912 -1.4009 18 6 4.4997 12.3068 -2.5932 19 7 5.7094 12.4550 -3.0876 20 14 3.1803 13.5785 -2.9553 21 1 1.9149 13.1833 -2.2863 22 1 3.6169 14.9035 -2.4464 23 1 2.9602 13.6595 -4.4217 24 6 4.1104 7.9939 -1.0956 25 6 3.8976 7.5880 -2.5312 26 6 1.8666 3.5068 0.0003 27 7 1.3133 2.3117 0.0004 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.0196 0.3608 -0.0098 32 1 5.1311 2.5630 0.0014 33 1 4.7435 7.0307 2.9174 34 1 3.7739 8.4992 3.1853 35 1 2.9868 7.0018 2.6315 36 1 6.1036 10.6655 -0.9989 37 1 5.6227 9.7524 -2.4492 38 1 5.9163 13.2245 -3.6407 39 1 2.9373 7.9697 -2.8781 40 1 4.6965 8.0003 -3.1476 41 1 3.9050 6.5006 -2.6063 42 1 1.2410 4.3872 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646915437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:15 Heat of formation + Delta-G solvation = -5.040671 kcal Electronic energy + Delta-G solvation = -27425.524032 eV Core-core repulsion = 23373.474675 eV Total energy + Delta-G solvation = -4052.049357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.39589 -40.92539 -39.66033 -38.19614 -36.48536 -34.02829 -33.00623 -32.60390 -31.64621 -30.70923 -29.09117 -27.94282 -26.58303 -25.99246 -24.72066 -23.82937 -22.82944 -21.66560 -19.62568 -19.23889 -18.87922 -18.03613 -17.52619 -16.91334 -16.66793 -16.47829 -15.70706 -15.20074 -15.00776 -14.72493 -14.60686 -14.34927 -13.92183 -13.78295 -13.45584 -13.26936 -13.07197 -12.98548 -12.75400 -12.54230 -12.27437 -12.09046 -12.04792 -11.75417 -11.61865 -11.55742 -11.06539 -11.00553 -10.85506 -10.71024 -10.42328 -10.33837 -10.01867 -9.79255 -9.76205 -8.98655 -8.70338 -8.38327 -7.75323 -6.31966 -4.39905 0.30957 0.82940 2.26283 2.48288 2.60073 2.68895 3.17210 3.23853 3.25835 3.33344 3.46399 3.54087 3.85470 4.25038 4.46642 4.52036 4.64916 4.84375 4.92389 4.93138 5.03067 5.11259 5.20904 5.25028 5.28258 5.46347 5.53673 5.71554 5.78459 5.88215 5.90497 5.92833 6.08020 6.09806 6.24899 6.45544 6.56562 6.71799 6.90179 6.95624 7.21495 7.33047 7.57855 7.78404 7.80243 8.10045 8.40327 8.66366 9.26843 10.75899 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021023 B = 0.002467 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.527622 B =11348.030440 C =11735.530024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.303 6.303 3 C 0.347 3.653 4 C -0.199 4.199 5 C 0.020 3.980 6 C -0.209 4.209 7 C 0.495 3.505 8 O -0.490 6.490 9 O -0.248 6.248 10 C -0.103 4.103 11 C 0.060 3.940 12 C -0.067 4.067 13 N -0.278 5.278 14 N -0.315 5.315 15 C 0.257 3.743 16 C -0.538 4.538 17 H 0.066 0.934 18 C 0.066 3.934 19 N -0.890 5.890 20 Si 0.908 3.092 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.106 3.894 25 C -0.085 4.085 26 C 0.203 3.797 27 N -0.546 5.546 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.268 0.732 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.217 -23.041 5.109 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.209 6.209 3 C 0.168 3.832 4 C -0.220 4.220 5 C -0.005 4.005 6 C -0.213 4.213 7 C 0.339 3.661 8 O -0.376 6.376 9 O -0.160 6.160 10 C -0.157 4.157 11 C -0.106 4.106 12 C -0.126 4.126 13 N -0.102 5.102 14 N -0.095 5.095 15 C 0.140 3.860 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.027 4.027 25 C -0.143 4.143 26 C 0.046 3.954 27 N -0.270 5.270 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.169 0.831 32 H 0.174 0.826 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.888 -22.036 5.265 23.990 hybrid contribution -0.230 0.291 -0.574 0.683 sum -8.117 -21.745 4.691 23.680 Atomic orbital electron populations 1.22959 0.76595 1.03282 1.02971 1.86222 1.23507 1.24464 1.86711 1.20211 0.89574 0.84905 0.88491 1.20767 0.91849 0.99635 1.09737 1.21292 1.01482 0.89597 0.88155 1.20023 0.95264 0.91536 1.14469 1.21426 0.85881 0.85400 0.73416 1.90849 1.15126 1.87232 1.44437 1.84722 1.36653 1.11568 1.83043 1.17530 1.18242 0.87904 0.91988 1.22249 0.98754 0.93429 0.96140 1.20072 1.01862 1.01596 0.89065 1.77372 1.22367 1.19895 0.90576 1.49339 1.40669 1.15663 1.03848 1.19812 0.95315 0.82943 0.87909 1.21322 0.97308 1.06723 1.32336 0.91553 1.24939 0.96050 0.97756 0.95023 1.69931 1.19322 1.29991 1.33515 0.86270 0.81368 0.80782 0.78106 1.19499 1.20574 1.20606 1.21019 0.96237 0.89174 0.96263 1.20355 1.03815 1.00926 0.89215 1.22975 0.91600 0.94137 0.86648 1.67506 1.40265 0.98583 1.20677 0.91849 0.88366 0.91871 0.83140 0.82632 0.91183 0.90784 0.90977 0.92468 0.92692 0.92193 0.89625 0.90232 0.91251 0.80379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.37 101.05 1.05 1.27 16 2 O -0.30 -2.67 10.46 -18.18 -0.19 -2.86 16 3 C 0.35 3.40 7.49 -16.95 -0.13 3.27 16 4 C -0.20 -1.72 9.97 -39.71 -0.40 -2.12 16 5 C 0.02 0.19 9.66 -39.27 -0.38 -0.19 16 6 C -0.21 -2.44 5.89 -104.84 -0.62 -3.06 16 7 C 0.49 7.54 7.84 34.50 0.27 7.81 16 8 O -0.49 -8.96 16.18 -19.28 -0.31 -9.27 16 9 O -0.25 -4.06 9.40 -25.59 -0.24 -4.30 16 10 C -0.10 -2.02 5.35 -39.79 -0.21 -2.23 16 11 C 0.06 1.21 7.22 -82.29 -0.59 0.61 16 12 C -0.07 -1.02 10.44 36.01 0.38 -0.64 16 13 N -0.28 -6.46 12.57 33.73 0.42 -6.04 16 14 N -0.31 -7.44 3.62 -58.04 -0.21 -7.65 16 15 C 0.26 6.54 6.01 -5.19 -0.03 6.51 16 16 C -0.54 -14.59 9.39 -34.44 -0.32 -14.92 16 17 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -24.75 13.29 55.43 0.74 -24.01 16 20 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 C 0.11 2.21 6.97 -81.77 -0.57 1.64 16 25 C -0.08 -1.45 10.10 36.00 0.36 -1.09 16 26 C 0.20 2.12 10.79 -17.10 -0.18 1.94 16 27 N -0.55 -5.70 9.19 -12.94 -0.12 -5.82 16 28 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.16 1.40 7.73 -52.49 -0.41 1.00 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.06 1.38 7.09 -51.93 -0.37 1.01 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.37 7.11 -51.93 -0.37 1.00 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.18 1.61 7.62 -52.48 -0.40 1.21 16 LS Contribution 375.42 15.07 5.66 5.66 Total: -1.00 -32.47 375.42 -6.06 -38.53 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.31 Total: -0.53 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.48 Total: 0.50 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.83 Total: -43.52 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.74 Total: -16.43 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.47 -6.06 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646915437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.492 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds