Wall clock time and date at job start Tue Mar 31 2020 15:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35494 * 116.99299 * 2 1 4 4 C 1.39164 * 119.50694 * 180.25041 * 3 2 1 5 5 C 1.36947 * 119.39841 * 180.30027 * 4 3 2 6 6 C 1.40317 * 118.46618 * 359.45339 * 5 4 3 7 7 C 1.47486 * 120.50225 * 180.30078 * 6 5 4 8 8 O 1.21519 * 119.99729 * 0.02562 * 7 6 5 9 9 O 1.34697 * 120.00153 * 179.97438 * 7 6 5 10 10 C 1.36187 * 116.99788 * 179.97438 * 9 7 6 11 11 C 1.40159 * 126.06206 * 269.69191 * 10 9 7 12 12 C 1.50700 * 125.83642 * 0.02562 * 11 10 9 13 13 N 1.30844 * 108.33658 * 179.81905 * 11 10 9 14 14 N 1.40080 * 108.33411 * 0.43886 * 13 11 10 15 15 C 1.46498 * 126.06389 * 179.73797 * 14 13 11 16 16 C 1.50702 * 109.47254 * 269.98089 * 15 14 13 17 17 H 1.07997 * 120.00108 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00254 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99691 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47372 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47413 * 119.99749 * 20 18 16 23 23 H 1.48502 * 109.46819 * 239.99316 * 20 18 16 24 24 C 1.35645 * 126.06080 * 90.00420 * 10 9 7 25 25 C 1.50694 * 126.21102 * 359.97438 * 24 10 9 26 26 C 1.39600 * 119.00125 * 0.27809 * 6 5 4 27 27 N 1.31697 * 120.49168 * 0.02562 * 26 6 5 28 28 H 1.08998 * 109.46921 * 60.00589 * 1 2 3 29 29 H 1.09007 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47507 * 300.00421 * 1 2 3 31 31 H 1.08000 * 120.30313 * 0.02606 * 4 3 2 32 32 H 1.08002 * 120.77038 * 179.73434 * 5 4 3 33 33 H 1.09001 * 109.47199 * 89.99234 * 12 11 10 34 34 H 1.08996 * 109.47194 * 210.00197 * 12 11 10 35 35 H 1.09007 * 109.46749 * 329.99713 * 12 11 10 36 36 H 1.08997 * 109.47303 * 29.97664 * 15 14 13 37 37 H 1.08996 * 109.47086 * 149.97864 * 15 14 13 38 38 H 0.96999 * 119.99547 * 180.02562 * 19 18 16 39 39 H 1.09006 * 109.46852 * 89.98154 * 25 24 10 40 40 H 1.09003 * 109.47056 * 209.97200 * 25 24 10 41 41 H 1.08996 * 109.47484 * 329.97842 * 25 24 10 42 42 H 1.08003 * 119.75528 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2073 0.0000 4 6 3.4343 1.2684 -0.0053 5 6 4.0536 2.4898 0.0010 6 6 3.2558 3.6442 0.0008 7 6 3.8756 4.9825 0.0008 8 8 5.0859 5.0915 0.0004 9 8 3.1002 6.0838 0.0001 10 6 3.7365 7.2879 0.0006 11 6 4.1156 8.0202 1.1339 12 6 3.8894 7.6096 2.5662 13 7 4.7036 9.1193 0.7361 14 7 4.7118 9.1325 -0.6646 15 6 5.2704 10.1874 -1.5139 16 6 4.2058 11.2132 -1.8066 17 1 3.2124 11.0912 -1.4009 18 6 4.4997 12.3068 -2.5932 19 7 5.7094 12.4550 -3.0876 20 14 3.1803 13.5785 -2.9553 21 1 1.9149 13.1833 -2.2863 22 1 3.6169 14.9035 -2.4464 23 1 2.9602 13.6595 -4.4217 24 6 4.1104 7.9939 -1.0956 25 6 3.8976 7.5880 -2.5312 26 6 1.8666 3.5068 0.0003 27 7 1.3133 2.3117 0.0004 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.0196 0.3608 -0.0098 32 1 5.1311 2.5630 0.0014 33 1 4.7435 7.0307 2.9174 34 1 3.7739 8.4992 3.1853 35 1 2.9868 7.0018 2.6315 36 1 6.1036 10.6655 -0.9989 37 1 5.6227 9.7524 -2.4492 38 1 5.9163 13.2245 -3.6407 39 1 2.9373 7.9697 -2.8781 40 1 4.6965 8.0003 -3.1476 41 1 3.9050 6.5006 -2.6063 42 1 1.2410 4.3872 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646915437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:14 Heat of formation + Delta-G solvation = -25.664833 kcal Electronic energy + Delta-G solvation = -27426.418363 eV Core-core repulsion = 23373.474675 eV Total energy + Delta-G solvation = -4052.943688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.74805 -41.90280 -40.94529 -38.96866 -37.81272 -35.89118 -34.37087 -33.79088 -32.75847 -32.04804 -30.68628 -28.65091 -27.92134 -27.75964 -25.77871 -24.82891 -24.34566 -22.85191 -21.05974 -20.82736 -19.61630 -19.17611 -18.90847 -18.53983 -17.91273 -17.27898 -17.09801 -16.65808 -16.28226 -16.12344 -15.70506 -15.36368 -15.05172 -14.86223 -14.56697 -14.47031 -14.37058 -14.18135 -14.14648 -13.88573 -13.66901 -13.42585 -13.32302 -13.15319 -12.87459 -12.77306 -12.72098 -12.49191 -12.29283 -12.22333 -11.97593 -11.71797 -11.32504 -11.19320 -10.83188 -10.76495 -10.07306 -9.75940 -9.38048 -8.37239 -6.54495 -0.56166 0.09268 0.74887 1.16163 1.36830 1.38720 1.39075 1.50620 1.63987 1.95703 2.16469 2.32899 2.62757 2.93976 3.12070 3.47723 3.62305 3.70129 3.77307 3.93622 3.98377 4.12506 4.36664 4.44625 4.46294 4.52486 4.57062 4.61476 4.68928 4.72258 4.76396 4.80327 4.81575 4.84459 4.97992 5.01686 5.18471 5.20931 5.31908 5.49640 5.74143 5.74812 6.02981 6.04100 6.54613 6.55427 6.75840 6.80879 7.16700 8.70438 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021023 B = 0.002467 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.527622 B =11348.030440 C =11735.530024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.307 6.307 3 C 0.344 3.656 4 C -0.191 4.191 5 C 0.022 3.978 6 C -0.224 4.224 7 C 0.502 3.498 8 O -0.525 6.525 9 O -0.241 6.241 10 C -0.101 4.101 11 C 0.061 3.939 12 C -0.066 4.066 13 N -0.322 5.322 14 N -0.342 5.342 15 C 0.274 3.726 16 C -0.553 4.553 17 H 0.053 0.947 18 C 0.022 3.978 19 N -0.918 5.918 20 Si 0.975 3.025 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.267 1.267 24 C 0.092 3.908 25 C -0.082 4.082 26 C 0.211 3.789 27 N -0.555 5.555 28 H 0.061 0.939 29 H 0.126 0.874 30 H 0.062 0.938 31 H 0.178 0.822 32 H 0.162 0.838 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.027 0.973 37 H 0.051 0.949 38 H 0.274 0.726 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.069 -25.089 5.244 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.212 6.212 3 C 0.166 3.834 4 C -0.211 4.211 5 C -0.003 4.003 6 C -0.228 4.228 7 C 0.348 3.652 8 O -0.414 6.414 9 O -0.152 6.152 10 C -0.155 4.155 11 C -0.106 4.106 12 C -0.124 4.124 13 N -0.146 5.146 14 N -0.123 5.123 15 C 0.156 3.844 16 C -0.591 4.591 17 H 0.072 0.928 18 C -0.179 4.179 19 N -0.556 5.556 20 Si 0.799 3.201 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.192 1.192 24 C -0.040 4.040 25 C -0.140 4.140 26 C 0.053 3.947 27 N -0.279 5.279 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.080 0.920 31 H 0.195 0.805 32 H 0.180 0.820 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.756 -24.125 5.402 26.577 hybrid contribution 0.279 0.696 -0.554 0.933 sum -9.477 -23.429 4.848 25.734 Atomic orbital electron populations 1.23194 0.75179 1.05136 1.02794 1.86233 1.24925 1.23853 1.86218 1.20515 0.90188 0.85104 0.87633 1.21002 0.91641 1.00072 1.08392 1.21413 1.01795 0.89439 0.87619 1.19850 0.95909 0.89825 1.17173 1.21889 0.85437 0.85809 0.72025 1.90842 1.16583 1.87539 1.46438 1.84716 1.36444 1.10880 1.83189 1.17566 1.17350 0.89091 0.91502 1.23062 0.96772 0.92272 0.98452 1.20267 1.03472 1.02544 0.86116 1.77296 1.24656 1.22055 0.90638 1.49095 1.42705 1.16384 1.04089 1.19340 0.94221 0.83271 0.87603 1.21428 0.97041 1.07809 1.32838 0.92844 1.25776 0.98184 0.99462 0.94496 1.70017 1.20963 1.30803 1.33850 0.85250 0.78410 0.78008 0.78477 1.19530 1.20046 1.19173 1.21655 0.95682 0.88384 0.98254 1.20454 1.04107 1.02307 0.87097 1.23096 0.91135 0.94641 0.85780 1.67552 1.40466 0.98695 1.21234 0.92062 0.85608 0.91973 0.80484 0.82020 0.89968 0.89814 0.88521 0.95448 0.93125 0.91661 0.88439 0.90858 0.89012 0.79349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.37 113.37 1.18 1.48 16 2 O -0.31 -4.58 10.46 -87.95 -0.92 -5.50 16 3 C 0.34 5.89 7.49 84.83 0.64 6.53 16 4 C -0.19 -2.78 9.97 22.19 0.22 -2.56 16 5 C 0.02 0.39 9.66 22.47 0.22 0.61 16 6 C -0.22 -4.86 5.89 -20.01 -0.12 -4.97 16 7 C 0.50 14.81 7.84 70.26 0.55 15.36 16 8 O -0.53 -19.05 16.18 19.78 0.32 -18.73 16 9 O -0.24 -7.61 9.40 -2.77 -0.03 -7.64 16 10 C -0.10 -3.96 5.35 22.14 0.12 -3.84 16 11 C 0.06 2.44 7.22 43.17 0.31 2.75 16 12 C -0.07 -1.89 10.44 71.24 0.74 -1.15 16 13 N -0.32 -15.48 12.57 -47.20 -0.59 -16.07 16 14 N -0.34 -16.78 3.62 -337.52 -1.22 -18.00 16 15 C 0.27 14.63 6.01 85.63 0.52 15.15 16 16 C -0.55 -30.86 9.39 25.60 0.24 -30.62 16 17 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 18 C 0.02 1.19 5.46 84.65 0.46 1.66 16 19 N -0.92 -51.87 13.29 21.45 0.28 -51.59 16 20 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 24 C 0.09 3.90 6.97 41.34 0.29 4.19 16 25 C -0.08 -2.79 10.10 71.23 0.72 -2.08 16 26 C 0.21 3.99 10.79 85.04 0.92 4.91 16 27 N -0.56 -10.39 9.19 -307.72 -2.83 -13.21 16 28 H 0.06 0.64 8.10 -2.39 -0.02 0.62 16 29 H 0.13 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.06 0.63 8.10 -2.39 -0.02 0.62 16 31 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.16 2.65 7.73 -2.91 -0.02 2.63 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.05 2.69 7.09 -2.39 -0.02 2.67 16 38 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 40 H 0.07 2.58 7.11 -2.39 -0.02 2.56 16 41 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.19 3.05 7.62 -2.91 -0.02 3.03 16 Total: -1.00 -71.39 375.42 5.09 -66.30 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.05 Total: 12.28 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 7.00 Total: 7.41 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -4.36 Total: -98.88 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.63 Total: -31.87 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -71.39 5.09 -66.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646915437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.632 kcal (2) G-P(sol) polarization free energy of solvation -71.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds