Wall clock time and date at job start Tue Mar 31 2020 15:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35677 * 116.99686 * 2 1 4 4 N 1.32283 * 119.68580 * 359.97438 * 3 2 1 5 5 C 1.31930 * 121.64704 * 180.02562 * 4 3 2 6 6 C 1.38089 * 120.83289 * 359.97438 * 5 4 3 7 7 C 1.38777 * 119.29006 * 359.72945 * 6 5 4 8 8 C 1.38424 * 118.48308 * 0.53184 * 7 6 5 9 9 C 1.50708 * 120.44063 * 179.73882 * 8 7 6 10 10 O 1.45195 * 109.47059 * 359.72556 * 9 8 7 11 11 C 1.34757 * 116.99661 * 180.02562 * 10 9 8 12 12 O 1.21519 * 120.00289 * 359.97438 * 11 10 9 13 13 C 1.47288 * 119.99744 * 180.02562 * 11 10 9 14 14 C 1.41343 * 126.43131 * 359.97077 * 13 11 10 15 15 N 1.30425 * 108.01629 * 180.02562 * 14 13 11 16 16 N 1.39932 * 108.91880 * 359.97438 * 15 14 13 17 17 C 1.46504 * 125.74487 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46925 * 269.97380 * 17 16 15 19 19 H 1.08004 * 119.99967 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00174 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00033 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99883 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47047 * 89.99645 * 22 20 18 24 24 H 1.48497 * 109.47193 * 209.99962 * 22 20 18 25 25 H 1.48499 * 109.46966 * 330.00064 * 22 20 18 26 26 C 1.34231 * 108.51244 * 0.02562 * 16 15 14 27 27 C 1.50696 * 126.29226 * 180.26391 * 26 16 15 28 28 H 1.08998 * 109.47361 * 60.00512 * 1 2 3 29 29 H 1.09008 * 109.46658 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47468 * 299.99631 * 1 2 3 31 31 H 1.08005 * 119.58265 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.35182 * 180.02562 * 6 5 4 33 33 H 1.08007 * 120.76114 * 180.29608 * 7 6 5 34 34 H 1.09005 * 109.46870 * 239.72703 * 9 8 7 35 35 H 1.08997 * 109.46799 * 119.72680 * 9 8 7 36 36 H 1.08006 * 125.98937 * 0.02562 * 14 13 11 37 37 H 1.08994 * 109.46858 * 29.97203 * 17 16 15 38 38 H 1.08995 * 109.47357 * 149.97612 * 17 16 15 39 39 H 0.97006 * 119.99837 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.47320 * 269.71403 * 27 26 16 41 41 H 1.09001 * 109.47680 * 29.71290 * 27 26 16 42 42 H 1.09005 * 109.47158 * 149.71511 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3183 2.3143 -0.0005 5 6 1.8766 3.5097 -0.0010 6 6 3.2504 3.6492 -0.0005 7 6 4.0482 2.5136 0.0062 8 6 3.4321 1.2740 0.0010 9 6 4.2558 0.0120 0.0021 10 8 5.6667 0.3549 0.0025 11 6 6.5447 -0.6674 0.0029 12 8 6.1422 -1.8140 0.0034 13 6 7.9921 -0.3950 0.0039 14 6 8.6067 0.8779 0.0038 15 7 9.8990 0.7019 0.0043 16 7 10.1699 -0.6709 0.0052 17 6 11.5022 -1.2804 0.0065 18 6 11.9597 -1.4906 -1.4139 19 1 11.3220 -1.1991 -2.2354 20 6 13.1927 -2.0543 -1.6647 21 7 13.5921 -2.2373 -2.9043 22 14 14.2959 -2.5579 -0.2439 23 1 14.0062 -3.9647 0.1331 24 1 15.7179 -2.4383 -0.6548 25 1 14.0405 -1.6711 0.9195 26 6 9.0037 -1.3355 0.0047 27 6 8.8300 -2.8324 0.0110 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 1.2512 4.3903 -0.0019 32 1 3.6992 4.6315 -0.0006 33 1 5.1251 2.5951 0.0116 34 1 4.0244 -0.5736 -0.8877 35 1 4.0237 -0.5726 0.8923 36 1 8.0956 1.8294 0.0035 37 1 12.2025 -0.6217 0.5200 38 1 11.4621 -2.2403 0.5211 39 1 14.4598 -2.6335 -3.0808 40 1 8.7861 -3.1974 -1.0151 41 1 9.6732 -3.2940 0.5250 42 1 7.9051 -3.0888 0.5277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649212979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:48 Heat of formation + Delta-G solvation = -11.465541 kcal Electronic energy + Delta-G solvation = -27019.248285 eV Core-core repulsion = 22966.920325 eV Total energy + Delta-G solvation = -4052.327960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.11088 -40.91662 -39.61236 -38.15329 -36.30727 -33.98816 -33.28595 -32.26275 -31.54312 -31.36151 -28.42753 -27.64246 -27.16392 -26.59040 -23.66178 -23.17019 -22.64036 -21.96113 -20.30852 -19.04570 -18.62439 -17.66586 -17.27368 -16.89445 -16.63535 -16.59812 -16.03403 -15.62507 -15.16071 -14.80658 -14.49487 -14.41923 -14.27931 -13.88610 -13.70424 -13.42803 -13.04634 -12.94807 -12.70169 -12.56035 -12.37445 -12.28525 -12.15791 -11.73320 -11.68315 -11.53327 -11.28266 -10.88038 -10.85722 -10.50138 -10.38050 -10.04344 -9.95302 -9.90173 -9.81717 -8.88696 -8.75154 -8.70385 -8.16422 -6.36491 -4.41834 0.78794 1.00714 1.82520 2.58825 2.64667 2.79014 3.07057 3.13943 3.15636 3.26864 3.44145 3.59099 3.98226 4.12295 4.50435 4.64222 4.73116 4.89338 4.93638 5.00211 5.01393 5.03296 5.10792 5.16712 5.24985 5.30167 5.33526 5.47205 5.56095 5.75822 5.83002 5.90935 5.95830 6.15103 6.17887 6.29043 6.39680 6.50046 6.66316 6.89216 6.95604 7.13157 7.43611 7.49971 8.07904 8.14883 8.22596 8.66309 9.16867 10.75586 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.026705 B = 0.002236 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.253773 B =12521.306751 C =13128.689737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.306 6.306 3 C 0.326 3.674 4 N -0.538 5.538 5 C 0.134 3.866 6 C -0.208 4.208 7 C -0.020 4.020 8 C -0.158 4.158 9 C 0.127 3.873 10 O -0.356 6.356 11 C 0.554 3.446 12 O -0.525 6.525 13 C -0.315 4.315 14 C 0.084 3.916 15 N -0.293 5.293 16 N -0.310 5.310 17 C 0.224 3.776 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.082 3.918 21 N -0.881 5.881 22 Si 0.872 3.128 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.263 1.263 26 C 0.177 3.823 27 C -0.098 4.098 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.160 0.840 32 H 0.141 0.859 33 H 0.154 0.846 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.186 0.814 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.271 0.729 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.538 7.469 7.958 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.213 6.213 3 C 0.147 3.853 4 N -0.262 5.262 5 C -0.021 4.021 6 C -0.228 4.228 7 C -0.046 4.046 8 C -0.161 4.161 9 C 0.053 3.947 10 O -0.274 6.274 11 C 0.401 3.599 12 O -0.415 6.415 13 C -0.328 4.328 14 C -0.104 4.104 15 N -0.112 5.112 16 N -0.086 5.086 17 C 0.105 3.895 18 C -0.585 4.585 19 H 0.100 0.900 20 C -0.123 4.123 21 N -0.518 5.518 22 Si 0.698 3.302 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.188 1.188 26 C 0.039 3.961 27 C -0.156 4.156 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.177 0.823 32 H 0.158 0.842 33 H 0.172 0.828 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.203 0.797 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.999 7.250 7.836 24.453 hybrid contribution 0.441 -0.411 0.439 0.745 sum -21.558 6.840 8.275 24.084 Atomic orbital electron populations 1.22874 0.77017 1.03110 1.02424 1.86268 1.23100 1.24310 1.87602 1.19432 0.88110 0.85093 0.92664 1.67372 1.40360 0.98737 1.19692 1.22432 0.93101 0.93536 0.93046 1.22052 0.94751 1.00058 1.05951 1.21424 1.01742 0.90102 0.91290 1.19647 0.90730 0.96363 1.09335 1.21293 0.76561 0.93239 1.03621 1.86426 1.16951 1.38612 1.85367 1.19957 0.85758 0.82286 0.71877 1.90778 1.80103 1.22216 1.48409 1.18781 0.89246 0.93720 1.31087 1.23920 0.90954 0.97736 0.97806 1.77220 1.16066 0.94124 1.23816 1.48955 1.06996 1.03429 1.49190 1.20207 0.75525 0.93352 1.00372 1.21072 1.04057 1.43471 0.89911 0.89966 1.24789 0.97067 0.94578 0.95897 1.69861 1.20808 1.42378 1.18707 0.86906 0.80860 0.79755 0.82672 1.19479 1.20315 1.18758 1.21447 0.85524 0.95777 0.93326 1.20655 1.03749 0.86628 1.04547 0.92249 0.88483 0.92270 0.82288 0.84155 0.82826 0.89609 0.89679 0.79667 0.92496 0.93286 0.91913 0.89094 0.90680 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.32 9.91 -18.73 -0.19 -3.50 16 3 C 0.33 3.69 7.47 -17.12 -0.13 3.57 16 4 N -0.54 -5.63 9.22 -13.33 -0.12 -5.76 16 5 C 0.13 1.09 11.18 -17.56 -0.20 0.90 16 6 C -0.21 -1.62 10.10 -39.44 -0.40 -2.02 16 7 C -0.02 -0.20 9.48 -39.31 -0.37 -0.57 16 8 C -0.16 -1.78 5.91 -104.32 -0.62 -2.39 16 9 C 0.13 1.57 5.36 36.01 0.19 1.76 16 10 O -0.36 -4.93 8.62 -40.65 -0.35 -5.28 16 11 C 0.55 9.17 7.95 34.41 0.27 9.44 16 12 O -0.52 -9.44 14.64 -19.28 -0.28 -9.72 16 13 C -0.32 -5.64 6.13 -105.08 -0.64 -6.28 16 14 C 0.08 1.44 11.87 -16.97 -0.20 1.23 16 15 N -0.29 -6.08 12.50 30.87 0.39 -5.69 16 16 N -0.31 -6.66 3.56 -57.76 -0.21 -6.86 16 17 C 0.22 5.07 5.04 -5.19 -0.03 5.04 16 18 C -0.55 -14.68 9.94 -34.44 -0.34 -15.02 16 19 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 21 N -0.88 -25.45 13.96 55.43 0.77 -24.67 16 22 Si 0.87 19.37 27.47 -169.99 -4.67 14.70 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 26 C 0.18 3.42 7.01 -81.59 -0.57 2.84 16 27 C -0.10 -1.63 9.56 36.00 0.34 -1.29 16 28 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 29 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 32 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.15 1.37 7.09 -52.48 -0.37 0.99 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.19 2.39 8.06 -52.48 -0.42 1.96 16 37 H 0.06 1.29 7.20 -51.93 -0.37 0.92 16 38 H 0.05 1.01 6.44 -51.93 -0.33 0.68 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 40 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.07 1.16 7.04 -51.93 -0.37 0.80 16 42 H 0.09 1.49 6.51 -51.93 -0.34 1.15 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -32.25 367.05 -6.03 -38.29 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.17 Total: 2.30 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -1.74 Total: 0.67 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.83 Total: -42.98 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.82 Total: -18.51 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.67 Total: 14.70 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.25 -6.03 -38.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649212979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.823 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds