Wall clock time and date at job start Tue Mar 31 2020 15:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35677 * 116.99686 * 2 1 4 4 N 1.32283 * 119.68580 * 359.97438 * 3 2 1 5 5 C 1.31930 * 121.64704 * 180.02562 * 4 3 2 6 6 C 1.38089 * 120.83289 * 359.97438 * 5 4 3 7 7 C 1.38777 * 119.29006 * 359.72945 * 6 5 4 8 8 C 1.38424 * 118.48308 * 0.53184 * 7 6 5 9 9 C 1.50708 * 120.44063 * 179.73882 * 8 7 6 10 10 O 1.45195 * 109.47059 * 359.72556 * 9 8 7 11 11 C 1.34757 * 116.99661 * 180.02562 * 10 9 8 12 12 O 1.21519 * 120.00289 * 359.97438 * 11 10 9 13 13 C 1.47288 * 119.99744 * 180.02562 * 11 10 9 14 14 C 1.41343 * 126.43131 * 359.97077 * 13 11 10 15 15 N 1.30425 * 108.01629 * 180.02562 * 14 13 11 16 16 N 1.39932 * 108.91880 * 359.97438 * 15 14 13 17 17 C 1.46504 * 125.74487 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46925 * 269.97380 * 17 16 15 19 19 H 1.08004 * 119.99967 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00174 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00033 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99883 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47047 * 89.99645 * 22 20 18 24 24 H 1.48497 * 109.47193 * 209.99962 * 22 20 18 25 25 H 1.48499 * 109.46966 * 330.00064 * 22 20 18 26 26 C 1.34231 * 108.51244 * 0.02562 * 16 15 14 27 27 C 1.50696 * 126.29226 * 180.26391 * 26 16 15 28 28 H 1.08998 * 109.47361 * 60.00512 * 1 2 3 29 29 H 1.09008 * 109.46658 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47468 * 299.99631 * 1 2 3 31 31 H 1.08005 * 119.58265 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.35182 * 180.02562 * 6 5 4 33 33 H 1.08007 * 120.76114 * 180.29608 * 7 6 5 34 34 H 1.09005 * 109.46870 * 239.72703 * 9 8 7 35 35 H 1.08997 * 109.46799 * 119.72680 * 9 8 7 36 36 H 1.08006 * 125.98937 * 0.02562 * 14 13 11 37 37 H 1.08994 * 109.46858 * 29.97203 * 17 16 15 38 38 H 1.08995 * 109.47357 * 149.97612 * 17 16 15 39 39 H 0.97006 * 119.99837 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.47320 * 269.71403 * 27 26 16 41 41 H 1.09001 * 109.47680 * 29.71290 * 27 26 16 42 42 H 1.09005 * 109.47158 * 149.71511 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3183 2.3143 -0.0005 5 6 1.8766 3.5097 -0.0010 6 6 3.2504 3.6492 -0.0005 7 6 4.0482 2.5136 0.0062 8 6 3.4321 1.2740 0.0010 9 6 4.2558 0.0120 0.0021 10 8 5.6667 0.3549 0.0025 11 6 6.5447 -0.6674 0.0029 12 8 6.1422 -1.8140 0.0034 13 6 7.9921 -0.3950 0.0039 14 6 8.6067 0.8779 0.0038 15 7 9.8990 0.7019 0.0043 16 7 10.1699 -0.6709 0.0052 17 6 11.5022 -1.2804 0.0065 18 6 11.9597 -1.4906 -1.4139 19 1 11.3220 -1.1991 -2.2354 20 6 13.1927 -2.0543 -1.6647 21 7 13.5921 -2.2373 -2.9043 22 14 14.2959 -2.5579 -0.2439 23 1 14.0062 -3.9647 0.1331 24 1 15.7179 -2.4383 -0.6548 25 1 14.0405 -1.6711 0.9195 26 6 9.0037 -1.3355 0.0047 27 6 8.8300 -2.8324 0.0110 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 1.2512 4.3903 -0.0019 32 1 3.6992 4.6315 -0.0006 33 1 5.1251 2.5951 0.0116 34 1 4.0244 -0.5736 -0.8877 35 1 4.0237 -0.5726 0.8923 36 1 8.0956 1.8294 0.0035 37 1 12.2025 -0.6217 0.5200 38 1 11.4621 -2.2403 0.5211 39 1 14.4598 -2.6335 -3.0808 40 1 8.7861 -3.1974 -1.0151 41 1 9.6732 -3.2940 0.5250 42 1 7.9051 -3.0888 0.5277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649212979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:47 Heat of formation + Delta-G solvation = -32.939850 kcal Electronic energy + Delta-G solvation = -27020.179481 eV Core-core repulsion = 22966.920325 eV Total energy + Delta-G solvation = -4053.259156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.46877 -41.77602 -40.85641 -38.86989 -37.53537 -35.79418 -34.21182 -33.94401 -32.96450 -32.16684 -30.00394 -28.68494 -28.21452 -27.63270 -25.18077 -24.24679 -23.72254 -22.99092 -21.69297 -20.51646 -19.37890 -19.28904 -18.86075 -17.90644 -17.63521 -17.60854 -16.96161 -16.91928 -16.44635 -16.17773 -15.84806 -15.35428 -15.18545 -15.13234 -14.74717 -14.59834 -14.42257 -14.19796 -14.05574 -13.83732 -13.73128 -13.57052 -13.17760 -13.06920 -12.95341 -12.55890 -12.45393 -12.19773 -12.16497 -11.97740 -11.85834 -11.84702 -11.34794 -10.91135 -10.72561 -10.70985 -10.33286 -9.67658 -9.42424 -8.42477 -6.54972 0.07597 0.29557 0.39441 1.16436 1.30361 1.35663 1.40557 1.48036 1.81607 2.11530 2.21801 2.25419 2.73984 2.89955 3.28723 3.62112 3.65223 3.73467 3.89242 4.01546 4.08291 4.16700 4.18359 4.25381 4.39226 4.43478 4.44043 4.50079 4.54402 4.66618 4.67175 4.74265 4.77498 4.94697 5.05587 5.11494 5.17074 5.18400 5.44117 5.51260 5.57449 5.77502 6.16731 6.19253 6.48217 6.67363 6.80271 6.84601 7.08934 8.73822 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.026705 B = 0.002236 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.253773 B =12521.306751 C =13128.689737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.311 3.689 4 N -0.552 5.552 5 C 0.133 3.867 6 C -0.199 4.199 7 C -0.028 4.028 8 C -0.178 4.178 9 C 0.132 3.868 10 O -0.345 6.345 11 C 0.560 3.440 12 O -0.541 6.541 13 C -0.320 4.320 14 C 0.101 3.899 15 N -0.331 5.331 16 N -0.333 5.333 17 C 0.232 3.768 18 C -0.554 4.554 19 H 0.027 0.973 20 C 0.023 3.977 21 N -0.935 5.935 22 Si 0.949 3.051 23 H -0.251 1.251 24 H -0.279 1.279 25 H -0.241 1.241 26 C 0.164 3.836 27 C -0.095 4.095 28 H 0.058 0.942 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.193 0.807 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.228 0.772 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.274 0.726 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.413 8.553 9.979 26.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.232 6.232 3 C 0.132 3.868 4 N -0.275 5.275 5 C -0.023 4.023 6 C -0.219 4.219 7 C -0.054 4.054 8 C -0.181 4.181 9 C 0.058 3.942 10 O -0.261 6.261 11 C 0.407 3.593 12 O -0.433 6.433 13 C -0.333 4.333 14 C -0.087 4.087 15 N -0.150 5.150 16 N -0.109 5.109 17 C 0.113 3.887 18 C -0.592 4.592 19 H 0.045 0.955 20 C -0.177 4.177 21 N -0.572 5.572 22 Si 0.769 3.231 23 H -0.176 1.176 24 H -0.204 1.204 25 H -0.164 1.164 26 C 0.027 3.973 27 C -0.152 4.152 28 H 0.077 0.923 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.210 0.790 32 H 0.190 0.810 33 H 0.178 0.822 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.244 0.756 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.919 8.348 9.865 26.311 hybrid contribution 0.497 -0.609 -0.283 0.835 sum -22.422 7.739 9.581 25.582 Atomic orbital electron populations 1.23054 0.75608 1.04564 1.02428 1.86238 1.24636 1.24593 1.87689 1.19569 0.88277 0.85553 0.93358 1.67440 1.40663 0.99263 1.20181 1.23092 0.93965 0.93760 0.91434 1.22393 0.94520 1.00795 1.04188 1.21640 1.02352 0.90171 0.91200 1.19624 0.90757 0.96346 1.11368 1.21317 0.75461 0.94243 1.03227 1.86400 1.17615 1.37366 1.84716 1.19742 0.85612 0.82412 0.71498 1.90770 1.80355 1.23005 1.49126 1.19000 0.89882 0.93878 1.30538 1.24592 0.89895 0.99101 0.95068 1.77169 1.17949 0.94095 1.25790 1.48828 1.06968 1.03983 1.51137 1.19980 0.76549 0.94671 0.97547 1.21169 1.03727 1.43395 0.90905 0.95477 1.25817 0.98657 0.94202 0.99037 1.70025 1.21685 1.43892 1.21647 0.85709 0.77812 0.80475 0.79061 1.17556 1.20446 1.16409 1.21960 0.85374 0.97088 0.92852 1.20705 1.04861 0.85292 1.04387 0.92287 0.86381 0.92142 0.78992 0.81032 0.82212 0.90359 0.89902 0.75552 0.92228 0.90668 0.91650 0.89801 0.89399 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 113.37 1.18 1.72 16 2 O -0.32 -6.98 9.91 -89.94 -0.89 -7.87 16 3 C 0.31 6.85 7.47 84.78 0.63 7.48 16 4 N -0.55 -10.75 9.22 -308.93 -2.85 -13.59 16 5 C 0.13 1.81 11.18 84.64 0.95 2.75 16 6 C -0.20 -2.52 10.10 22.36 0.23 -2.29 16 7 C -0.03 -0.49 9.48 22.44 0.21 -0.28 16 8 C -0.18 -3.86 5.91 -19.67 -0.12 -3.98 16 9 C 0.13 3.20 5.36 71.24 0.38 3.59 16 10 O -0.34 -9.15 8.62 -56.68 -0.49 -9.63 16 11 C 0.56 18.05 7.95 70.20 0.56 18.61 16 12 O -0.54 -19.18 14.64 19.77 0.29 -18.89 16 13 C -0.32 -11.18 6.13 -20.16 -0.12 -11.31 16 14 C 0.10 3.33 11.87 85.67 1.02 4.34 16 15 N -0.33 -13.59 12.50 -56.25 -0.70 -14.29 16 16 N -0.33 -14.27 3.56 -336.66 -1.20 -15.47 16 17 C 0.23 10.37 5.04 85.63 0.43 10.80 16 18 C -0.55 -30.53 9.94 25.60 0.25 -30.27 16 19 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 20 C 0.02 1.26 5.47 84.65 0.46 1.73 16 21 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 22 Si 0.95 39.30 27.47 68.60 1.88 41.18 16 23 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.24 -9.06 6.54 99.48 0.65 -8.41 16 26 C 0.16 6.27 7.01 42.16 0.30 6.57 16 27 C -0.09 -3.11 9.56 71.23 0.68 -2.43 16 28 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 29 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 31 H 0.19 1.20 8.06 -2.91 -0.02 1.17 16 32 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 33 H 0.16 2.48 7.09 -2.91 -0.02 2.46 16 34 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.23 5.18 8.06 -2.91 -0.02 5.16 16 37 H 0.06 2.62 7.20 -2.39 -0.02 2.61 16 38 H 0.08 2.95 6.44 -2.39 -0.02 2.94 16 39 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 40 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 41 H 0.09 2.62 7.04 -2.39 -0.02 2.60 16 42 H 0.11 3.23 6.51 -2.38 -0.02 3.22 16 Total: -1.00 -72.72 367.05 4.38 -68.34 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 1.00 Total: 18.51 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 7.04 Total: 7.03 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -4.45 Total: -98.66 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -1.09 Total: -36.40 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 1.88 Total: 41.18 kcal Total: -72.72 4.38 -68.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649212979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.404 kcal (2) G-P(sol) polarization free energy of solvation -72.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds