Wall clock time and date at job start Tue Mar 31 2020 16:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47140 * 2 1 4 4 C 1.34330 * 126.44946 * 89.99693 * 3 2 1 5 5 N 1.34475 * 107.67521 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.69866 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.62158 * 180.26260 * 6 5 4 8 8 N 1.46506 * 109.47116 * 89.69619 * 7 6 5 9 9 C 1.34773 * 119.99987 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00313 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00019 * 180.02562 * 9 8 7 12 12 C 1.40023 * 119.99954 * 175.49294 * 11 9 8 13 13 C 1.38913 * 119.99859 * 214.84704 * 12 11 9 14 14 C 1.38005 * 120.00179 * 179.80979 * 13 12 11 15 15 C 1.38901 * 119.99678 * 0.44650 * 14 13 12 16 16 O 1.35783 * 119.99904 * 179.76901 * 15 14 13 17 17 C 1.34817 * 117.00215 * 185.36471 * 16 15 14 18 18 H 1.07996 * 119.99620 * 354.95546 * 17 16 15 19 19 C 1.38628 * 119.99987 * 174.96040 * 17 16 15 20 20 N 1.31576 * 119.99837 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00186 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47224 * 89.99855 * 21 19 17 23 23 H 1.48496 * 109.47206 * 209.99929 * 21 19 17 24 24 H 1.48499 * 109.47193 * 330.00268 * 21 19 17 25 25 C 1.38902 * 120.00517 * 359.78149 * 15 14 13 26 26 C 1.38010 * 119.99931 * 0.02562 * 25 15 14 27 27 O 1.33971 * 108.76412 * 0.02562 * 6 5 4 28 28 H 1.08995 * 109.47090 * 60.00149 * 1 2 3 29 29 H 1.09002 * 109.46771 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46789 * 299.99871 * 1 2 3 31 31 H 1.09003 * 109.47223 * 239.99962 * 2 1 3 32 32 H 1.09000 * 109.47524 * 120.00019 * 2 1 3 33 33 H 1.08006 * 126.15972 * 0.02562 * 4 3 2 34 34 H 1.08996 * 109.47513 * 209.70072 * 7 6 5 35 35 H 1.09004 * 109.47163 * 329.69911 * 7 6 5 36 36 H 0.96995 * 119.99780 * 0.02562 * 8 7 6 37 37 H 0.96998 * 119.99462 * 355.48407 * 11 9 8 38 38 H 1.08008 * 119.99958 * 0.02562 * 13 12 11 39 39 H 1.08003 * 120.00423 * 180.18304 * 14 13 12 40 40 H 0.97007 * 120.00142 * 180.02562 * 20 19 17 41 41 H 1.07997 * 120.00205 * 179.97438 * 25 15 14 42 42 H 1.08001 * 120.00058 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1732 1.0805 5 7 2.7222 3.3738 0.6477 6 6 2.7219 3.3721 -0.6548 7 6 3.1347 4.5242 -1.5341 8 7 4.5703 4.4358 -1.8128 9 6 5.1655 5.3668 -2.5844 10 8 4.5110 6.2798 -3.0497 11 7 6.4861 5.2852 -2.8413 12 6 7.0864 6.1969 -3.7183 13 6 8.1282 5.7867 -4.5405 14 6 8.7173 6.6842 -5.4077 15 6 8.2746 8.0000 -5.4518 16 8 8.8572 8.8842 -6.3017 17 6 8.4577 10.1690 -6.2168 18 1 7.6494 10.4404 -5.5540 19 6 9.0843 11.1417 -6.9804 20 7 8.6940 12.3955 -6.8980 21 14 10.4828 10.6723 -8.1264 22 1 9.9337 10.3295 -9.4630 23 1 11.4219 11.8153 -8.2555 24 1 11.2044 9.4988 -7.5720 25 6 7.2360 8.4115 -4.6263 26 6 6.6442 7.5130 -3.7619 27 8 2.2990 2.1755 -1.0841 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1910 1.8688 2.1112 34 1 2.5795 4.4833 -2.4711 35 1 2.9205 5.4643 -1.0257 36 1 5.0924 3.7073 -1.4420 37 1 7.0206 4.5951 -2.4184 38 1 8.4750 4.7645 -4.5035 39 1 9.5253 6.3646 -6.0491 40 1 9.1322 13.0761 -7.4326 41 1 6.8921 9.4347 -4.6603 42 1 5.8369 7.8330 -3.1198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649801709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:32 Heat of formation + Delta-G solvation = 2.777387 kcal Electronic energy + Delta-G solvation = -26157.813606 eV Core-core repulsion = 22106.103266 eV Total energy + Delta-G solvation = -4051.710340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.84387 -40.41619 -38.92458 -36.92838 -35.51637 -35.14842 -34.45990 -34.01747 -32.28578 -30.38594 -30.21944 -28.22796 -26.76838 -25.05161 -24.13694 -22.75346 -22.40653 -21.61942 -21.34184 -20.58179 -18.81276 -18.02293 -17.62742 -17.28651 -17.01235 -16.66424 -15.80774 -15.49995 -15.19643 -15.06841 -14.67277 -14.45808 -13.97445 -13.80833 -13.76671 -13.74022 -13.53018 -13.31033 -13.08550 -12.72827 -12.38295 -12.32382 -12.23899 -11.86796 -11.76970 -11.71943 -11.61088 -10.95727 -10.93610 -10.72449 -10.30106 -10.04142 -9.69529 -9.40442 -9.27206 -9.20119 -8.73117 -8.24672 -7.02404 -6.37158 -4.02996 0.82723 1.95785 2.09461 2.13537 2.19196 2.76265 3.19300 3.26601 3.28559 3.42597 3.49492 4.12902 4.14651 4.27002 4.37340 4.51127 4.53193 4.58150 4.78003 4.88510 4.95865 5.10991 5.14638 5.16968 5.21261 5.34928 5.54221 5.58113 5.59455 5.67371 5.78910 6.01594 6.09921 6.11418 6.25286 6.56199 6.64937 6.85845 7.09120 7.15853 7.23725 7.34912 7.62484 7.83600 7.92008 8.07066 8.54766 8.97882 9.59917 10.70473 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.039208 B = 0.001733 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.963473 B =16153.977733 C =16472.120387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C -0.035 4.035 4 C -0.043 4.043 5 N -0.458 5.458 6 C 0.169 3.831 7 C 0.242 3.758 8 N -0.746 5.746 9 C 0.705 3.295 10 O -0.569 6.569 11 N -0.672 5.672 12 C 0.061 3.939 13 C -0.097 4.097 14 C -0.177 4.177 15 C 0.151 3.849 16 O -0.218 6.218 17 C -0.388 4.388 18 H 0.107 0.893 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.206 4.206 26 C -0.066 4.066 27 O -0.193 6.193 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.185 0.815 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.398 0.602 37 H 0.399 0.601 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.279 0.721 41 H 0.137 0.863 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 -26.267 15.116 32.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.077 4.077 3 C -0.088 4.088 4 C -0.182 4.182 5 N -0.187 5.187 6 C -0.038 4.038 7 C 0.117 3.883 8 N -0.405 5.405 9 C 0.406 3.594 10 O -0.445 6.445 11 N -0.320 5.320 12 C -0.032 4.032 13 C -0.117 4.117 14 C -0.197 4.197 15 C 0.098 3.902 16 O -0.123 6.123 17 C -0.464 4.464 18 H 0.124 0.876 19 C -0.141 4.141 20 N -0.518 5.518 21 Si 0.732 3.268 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.184 1.184 25 C -0.226 4.226 26 C -0.086 4.086 27 O -0.079 6.079 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.203 0.797 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.232 0.768 37 H 0.233 0.767 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.089 0.911 41 H 0.154 0.846 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.277 -24.697 14.730 31.267 hybrid contribution 0.720 -1.320 -0.308 1.535 sum -11.557 -26.017 14.421 31.913 Atomic orbital electron populations 1.21813 0.93430 1.02800 1.02902 1.20120 0.96679 0.86259 1.04691 1.23640 1.04446 0.96225 0.84529 1.23145 1.04855 0.89684 1.00534 1.70494 1.16812 1.22429 1.09013 1.26095 1.01015 0.86370 0.90276 1.19270 0.81149 0.90848 0.97016 1.44951 1.08840 1.30558 1.56134 1.15778 0.81980 0.82321 0.79327 1.90974 1.63641 1.34416 1.55453 1.42244 1.06628 1.34891 1.48188 1.17082 0.99636 0.89009 0.97494 1.20313 0.97425 0.98397 0.95613 1.19956 1.04337 0.91549 1.03865 1.19150 0.91745 0.89880 0.89399 1.83563 1.58997 1.18713 1.50986 1.20783 1.19139 0.79152 1.27291 0.87552 1.24465 0.98231 0.93837 0.97521 1.69662 1.41723 1.00105 1.40267 0.86174 0.81362 0.78571 0.80733 1.19935 1.20879 1.18366 1.21235 0.99629 1.01283 1.00406 1.20950 0.98670 0.90683 0.98270 1.84435 1.63538 1.23357 1.36567 0.92125 0.91158 0.91963 0.89625 0.88256 0.79744 0.88377 0.86956 0.76800 0.76667 0.86628 0.86085 0.91100 0.84563 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.89 37.16 0.37 -0.15 16 2 C -0.04 -0.15 6.49 -27.88 -0.18 -0.33 16 3 C -0.03 -0.25 6.64 -35.69 -0.24 -0.49 16 4 C -0.04 -0.34 11.80 -17.77 -0.21 -0.55 16 5 N -0.46 -4.74 11.29 -11.10 -0.13 -4.86 16 6 C 0.17 1.62 7.71 -12.95 -0.10 1.52 16 7 C 0.24 2.31 6.30 -5.19 -0.03 2.28 16 8 N -0.75 -7.47 5.55 -66.41 -0.37 -7.84 16 9 C 0.71 9.88 8.41 -86.92 -0.73 9.15 16 10 O -0.57 -10.36 13.78 5.28 0.07 -10.29 16 11 N -0.67 -8.85 5.35 -14.18 -0.08 -8.93 16 12 C 0.06 1.04 6.30 -83.62 -0.53 0.51 16 13 C -0.10 -1.59 9.96 -39.42 -0.39 -1.99 16 14 C -0.18 -3.44 9.98 -39.42 -0.39 -3.84 16 15 C 0.15 3.51 6.65 -39.09 -0.26 3.25 16 16 O -0.22 -5.77 8.58 -0.02 0.00 -5.77 16 17 C -0.39 -11.07 9.94 30.88 0.31 -10.76 16 18 H 0.11 3.12 5.43 -52.49 -0.28 2.83 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 20 N -0.88 -25.69 13.96 55.48 0.77 -24.92 16 21 Si 0.91 21.80 28.62 -169.99 -4.86 16.94 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.26 -6.23 7.11 56.52 0.40 -5.82 16 25 C -0.21 -4.64 9.16 -39.42 -0.36 -5.00 16 26 C -0.07 -1.32 8.69 -39.42 -0.34 -1.66 16 27 O -0.19 -1.78 10.78 5.33 0.06 -1.73 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.19 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 3.05 8.48 -40.82 -0.35 2.70 16 37 H 0.40 3.70 8.84 -40.82 -0.36 3.34 16 38 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 40 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.14 3.24 5.63 -52.49 -0.30 2.95 16 42 H 0.13 2.62 6.22 -52.49 -0.33 2.30 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -34.42 366.73 -7.17 -41.59 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.98 Total: 6.65 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -3.19 Total: -6.36 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.20 Total: -46.56 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.13 Total: -17.79 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.86 Total: 16.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.42 -7.17 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649801709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.368 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds