Wall clock time and date at job start Tue Mar 31 2020 16:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47140 * 2 1 4 4 C 1.34330 * 126.44946 * 89.99693 * 3 2 1 5 5 N 1.34475 * 107.67521 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.69866 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.62158 * 180.26260 * 6 5 4 8 8 N 1.46506 * 109.47116 * 89.69619 * 7 6 5 9 9 C 1.34773 * 119.99987 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00313 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00019 * 180.02562 * 9 8 7 12 12 C 1.40023 * 119.99954 * 175.49294 * 11 9 8 13 13 C 1.38913 * 119.99859 * 214.84704 * 12 11 9 14 14 C 1.38005 * 120.00179 * 179.80979 * 13 12 11 15 15 C 1.38901 * 119.99678 * 0.44650 * 14 13 12 16 16 O 1.35783 * 119.99904 * 179.76901 * 15 14 13 17 17 C 1.34817 * 117.00215 * 185.36471 * 16 15 14 18 18 H 1.07996 * 119.99620 * 354.95546 * 17 16 15 19 19 C 1.38628 * 119.99987 * 174.96040 * 17 16 15 20 20 N 1.31576 * 119.99837 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00186 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47224 * 89.99855 * 21 19 17 23 23 H 1.48496 * 109.47206 * 209.99929 * 21 19 17 24 24 H 1.48499 * 109.47193 * 330.00268 * 21 19 17 25 25 C 1.38902 * 120.00517 * 359.78149 * 15 14 13 26 26 C 1.38010 * 119.99931 * 0.02562 * 25 15 14 27 27 O 1.33971 * 108.76412 * 0.02562 * 6 5 4 28 28 H 1.08995 * 109.47090 * 60.00149 * 1 2 3 29 29 H 1.09002 * 109.46771 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46789 * 299.99871 * 1 2 3 31 31 H 1.09003 * 109.47223 * 239.99962 * 2 1 3 32 32 H 1.09000 * 109.47524 * 120.00019 * 2 1 3 33 33 H 1.08006 * 126.15972 * 0.02562 * 4 3 2 34 34 H 1.08996 * 109.47513 * 209.70072 * 7 6 5 35 35 H 1.09004 * 109.47163 * 329.69911 * 7 6 5 36 36 H 0.96995 * 119.99780 * 0.02562 * 8 7 6 37 37 H 0.96998 * 119.99462 * 355.48407 * 11 9 8 38 38 H 1.08008 * 119.99958 * 0.02562 * 13 12 11 39 39 H 1.08003 * 120.00423 * 180.18304 * 14 13 12 40 40 H 0.97007 * 120.00142 * 180.02562 * 20 19 17 41 41 H 1.07997 * 120.00205 * 179.97438 * 25 15 14 42 42 H 1.08001 * 120.00058 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1732 1.0805 5 7 2.7222 3.3738 0.6477 6 6 2.7219 3.3721 -0.6548 7 6 3.1347 4.5242 -1.5341 8 7 4.5703 4.4358 -1.8128 9 6 5.1655 5.3668 -2.5844 10 8 4.5110 6.2798 -3.0497 11 7 6.4861 5.2852 -2.8413 12 6 7.0864 6.1969 -3.7183 13 6 8.1282 5.7867 -4.5405 14 6 8.7173 6.6842 -5.4077 15 6 8.2746 8.0000 -5.4518 16 8 8.8572 8.8842 -6.3017 17 6 8.4577 10.1690 -6.2168 18 1 7.6494 10.4404 -5.5540 19 6 9.0843 11.1417 -6.9804 20 7 8.6940 12.3955 -6.8980 21 14 10.4828 10.6723 -8.1264 22 1 9.9337 10.3295 -9.4630 23 1 11.4219 11.8153 -8.2555 24 1 11.2044 9.4988 -7.5720 25 6 7.2360 8.4115 -4.6263 26 6 6.6442 7.5130 -3.7619 27 8 2.2990 2.1755 -1.0841 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1910 1.8688 2.1112 34 1 2.5795 4.4833 -2.4711 35 1 2.9205 5.4643 -1.0257 36 1 5.0924 3.7073 -1.4420 37 1 7.0206 4.5951 -2.4184 38 1 8.4750 4.7645 -4.5035 39 1 9.5253 6.3646 -6.0491 40 1 9.1322 13.0761 -7.4326 41 1 6.8921 9.4347 -4.6603 42 1 5.8369 7.8330 -3.1198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649801709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:31 Heat of formation + Delta-G solvation = -23.788834 kcal Electronic energy + Delta-G solvation = -26158.965604 eV Core-core repulsion = 22106.103266 eV Total energy + Delta-G solvation = -4052.862338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.48959 -41.69221 -40.57677 -38.47915 -36.43291 -35.80705 -35.46143 -34.99128 -34.33708 -31.85985 -31.17459 -29.55411 -27.71352 -26.90792 -24.62181 -24.09556 -23.36845 -22.92362 -21.98896 -21.88017 -20.18203 -19.54346 -19.18462 -18.55117 -17.82834 -17.72267 -16.91007 -16.49511 -16.29526 -15.93565 -15.80774 -15.66261 -15.61630 -15.39223 -15.20314 -14.48847 -14.42310 -14.24202 -14.19301 -14.14751 -13.92152 -13.47842 -13.33493 -13.24529 -12.72724 -12.63001 -12.51000 -12.45173 -12.13538 -12.01972 -11.56890 -11.54694 -11.40489 -11.01043 -10.66503 -10.34778 -9.85104 -9.82003 -8.63646 -8.47046 -6.19353 0.16565 0.52075 0.56719 1.24776 1.34234 1.39249 1.51597 1.55111 1.83003 2.01108 2.31009 2.79474 2.84490 3.05186 3.17011 3.20645 3.66768 3.97451 4.02339 4.10172 4.13419 4.24269 4.28853 4.37520 4.49290 4.50004 4.64738 4.67690 4.70416 4.87537 4.98795 5.06396 5.09452 5.16336 5.20549 5.21772 5.31858 5.37671 5.50476 5.62918 5.76955 5.88249 5.93842 6.23190 6.58986 6.86659 6.90441 7.42356 7.59832 8.64763 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.039208 B = 0.001733 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.963473 B =16153.977733 C =16472.120387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.039 4.039 3 C -0.028 4.028 4 C -0.057 4.057 5 N -0.480 5.480 6 C 0.159 3.841 7 C 0.245 3.755 8 N -0.724 5.724 9 C 0.705 3.295 10 O -0.613 6.613 11 N -0.659 5.659 12 C 0.089 3.911 13 C -0.078 4.078 14 C -0.166 4.166 15 C 0.111 3.889 16 O -0.241 6.241 17 C -0.400 4.400 18 H 0.076 0.924 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.976 3.024 22 H -0.266 1.266 23 H -0.269 1.269 24 H -0.257 1.257 25 C -0.222 4.222 26 C -0.081 4.081 27 O -0.204 6.204 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.210 0.790 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.414 0.586 37 H 0.424 0.576 38 H 0.173 0.827 39 H 0.145 0.855 40 H 0.284 0.716 41 H 0.105 0.895 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.220 -31.126 16.071 36.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 C -0.081 4.081 4 C -0.196 4.196 5 N -0.211 5.211 6 C -0.048 4.048 7 C 0.120 3.880 8 N -0.383 5.383 9 C 0.406 3.594 10 O -0.492 6.492 11 N -0.308 5.308 12 C -0.006 4.006 13 C -0.098 4.098 14 C -0.185 4.185 15 C 0.061 3.939 16 O -0.148 6.148 17 C -0.476 4.476 18 H 0.093 0.907 19 C -0.191 4.191 20 N -0.567 5.567 21 Si 0.797 3.203 22 H -0.191 1.191 23 H -0.194 1.194 24 H -0.181 1.181 25 C -0.242 4.242 26 C -0.101 4.101 27 O -0.090 6.090 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.143 0.857 33 H 0.227 0.773 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.250 0.750 37 H 0.263 0.737 38 H 0.191 0.809 39 H 0.163 0.837 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.501 -29.660 15.755 35.499 hybrid contribution 0.229 -0.149 -0.308 0.412 sum -11.272 -29.809 15.447 35.415 Atomic orbital electron populations 1.21812 0.93169 1.03733 1.02117 1.20350 0.96740 0.84234 1.06266 1.24353 1.02864 0.97148 0.83778 1.23609 1.05029 0.88990 1.01963 1.70467 1.17350 1.23851 1.09411 1.25848 1.02196 0.86632 0.90083 1.19208 0.80622 0.90976 0.97197 1.44709 1.09180 1.29798 1.54589 1.15897 0.81978 0.82248 0.79319 1.90970 1.64668 1.36389 1.57189 1.42023 1.06682 1.34580 1.47538 1.17186 0.98505 0.88228 0.96653 1.20811 0.95664 1.00266 0.93083 1.20379 1.04335 0.89816 1.04013 1.19691 0.92693 0.91198 0.90282 1.83502 1.60371 1.17831 1.53127 1.20685 1.18855 0.80806 1.27266 0.90677 1.25344 1.00934 0.93622 0.99188 1.69758 1.43665 1.01215 1.42042 0.85144 0.78100 0.78559 0.78448 1.19141 1.19364 1.18106 1.21117 1.00591 1.00593 1.01911 1.20938 0.98912 0.92072 0.98186 1.84435 1.63630 1.23392 1.37512 0.93665 0.89384 0.92012 0.89034 0.85659 0.77333 0.88146 0.87547 0.74977 0.73677 0.80942 0.83737 0.90620 0.87733 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.89 71.98 0.71 0.03 16 2 C -0.04 -0.18 6.49 29.85 0.19 0.02 16 3 C -0.03 -0.34 6.64 24.79 0.16 -0.18 16 4 C -0.06 -0.78 11.80 83.39 0.98 0.21 16 5 N -0.48 -9.30 11.29 -303.83 -3.43 -12.74 16 6 C 0.16 2.85 7.71 88.34 0.68 3.53 16 7 C 0.24 4.46 6.30 85.63 0.54 5.00 16 8 N -0.72 -12.98 5.55 -482.28 -2.68 -15.66 16 9 C 0.71 18.40 8.41 179.05 1.51 19.90 16 10 O -0.61 -22.16 13.78 -4.01 -0.06 -22.22 16 11 N -0.66 -15.08 5.35 -317.04 -1.69 -16.77 16 12 C 0.09 2.81 6.30 38.15 0.24 3.05 16 13 C -0.08 -2.22 9.96 22.38 0.22 -2.00 16 14 C -0.17 -6.03 9.98 22.37 0.22 -5.81 16 15 C 0.11 5.26 6.65 22.59 0.15 5.41 16 16 O -0.24 -13.23 8.58 -22.98 -0.20 -13.42 16 17 C -0.40 -24.25 9.94 67.91 0.68 -23.57 16 18 H 0.08 4.86 5.43 -2.91 -0.02 4.84 16 19 C 0.01 0.42 5.49 84.82 0.47 0.88 16 20 N -0.93 -56.74 13.96 21.61 0.30 -56.44 16 21 Si 0.98 45.87 28.62 68.60 1.96 47.84 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 25 C -0.22 -10.60 9.16 22.37 0.20 -10.40 16 26 C -0.08 -3.28 8.69 22.38 0.19 -3.09 16 27 O -0.20 -3.44 10.78 -3.83 -0.04 -3.48 16 28 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.21 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.41 5.06 8.48 -92.71 -0.79 4.27 16 37 H 0.42 5.73 8.84 -92.71 -0.82 4.91 16 38 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.28 15.93 8.31 -92.70 -0.77 15.16 16 41 H 0.10 5.56 5.63 -2.91 -0.02 5.55 16 42 H 0.12 5.15 6.22 -2.91 -0.02 5.13 16 Total: -1.00 -80.47 366.73 0.81 -79.66 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -0.51 Total: 20.24 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 7.16 Total: -7.00 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -7.50 Total: -101.60 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.29 Total: -39.13 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.96 Total: 47.84 kcal Total: -80.47 0.81 -79.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649801709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.867 kcal (2) G-P(sol) polarization free energy of solvation -80.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds