Wall clock time and date at job start Tue Mar 31 2020 15:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30850 * 125.83252 * 2 1 4 4 N 1.40084 * 108.33769 * 180.15693 * 3 2 1 5 5 C 1.46491 * 126.06337 * 179.81724 * 4 3 2 6 6 C 1.50702 * 109.46957 * 269.68691 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 C 1.35792 * 107.86787 * 359.55392 * 4 3 2 15 15 C 1.50695 * 126.20911 * 180.28751 * 14 4 3 16 16 C 1.35641 * 107.58086 * 0.26129 * 14 4 3 17 17 O 1.36191 * 126.06179 * 180.02562 * 16 14 4 18 18 C 1.34740 * 116.99931 * 90.00217 * 17 16 14 19 19 O 1.21558 * 120.00016 * 359.97438 * 18 17 16 20 20 C 1.47144 * 119.99749 * 180.02562 * 18 17 16 21 21 C 1.38067 * 120.88888 * 359.71834 * 20 18 17 22 22 N 1.34318 * 120.36144 * 179.78681 * 21 20 18 23 23 C 1.46498 * 118.80354 * 180.26384 * 22 21 20 24 24 C 1.35591 * 122.39840 * 0.48214 * 22 21 20 25 25 C 1.34861 * 121.81233 * 359.78723 * 24 22 21 26 26 C 1.41667 * 119.34513 * 359.96681 * 25 24 22 27 27 O 1.22088 * 121.06931 * 179.97438 * 26 25 24 28 28 H 1.08994 * 109.47538 * 270.33186 * 1 2 3 29 29 H 1.09004 * 109.47113 * 30.33349 * 1 2 3 30 30 H 1.09000 * 109.46968 * 150.33085 * 1 2 3 31 31 H 1.09004 * 109.47166 * 149.68957 * 5 4 3 32 32 H 1.08994 * 109.47507 * 29.68663 * 5 4 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.47435 * 89.99548 * 15 14 4 35 35 H 1.08994 * 109.47282 * 209.99886 * 15 14 4 36 36 H 1.09007 * 109.46645 * 329.99901 * 15 14 4 37 37 H 1.07999 * 119.81931 * 359.97438 * 21 20 18 38 38 H 1.08994 * 109.47287 * 270.21452 * 23 22 21 39 39 H 1.09002 * 109.47260 * 30.21373 * 23 22 21 40 40 H 1.09007 * 109.47570 * 150.21276 * 23 22 21 41 41 H 1.08005 * 119.09752 * 179.75434 * 24 22 21 42 42 H 1.08000 * 120.32959 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2729 1.0608 0.0000 4 7 3.6090 0.6397 -0.0036 5 6 4.7874 1.5099 -0.0086 6 6 5.1916 1.8000 -1.4312 7 1 4.6268 1.3786 -2.2497 8 6 6.2787 2.6084 -1.6878 9 7 6.9662 3.1218 -0.6911 10 14 6.7750 2.9742 -3.4511 11 1 5.8464 2.2820 -4.3805 12 1 6.7127 4.4387 -3.6892 13 1 8.1603 2.4931 -3.6854 14 6 3.6178 -0.7181 0.0042 15 6 4.8395 -1.6004 0.0099 16 6 2.3275 -1.1363 0.0066 17 8 1.9042 -2.4307 0.0146 18 6 1.7139 -3.0046 1.2188 19 8 1.9199 -2.3692 2.2343 20 6 1.2578 -4.4010 1.3043 21 6 1.0137 -5.1381 0.1627 22 7 0.6017 -6.4134 0.2532 23 6 0.3585 -7.1657 -0.9801 24 6 0.3985 -7.0285 1.4444 25 6 0.6034 -6.3935 2.6164 26 6 1.0437 -5.0470 2.6088 27 8 1.2386 -4.4420 3.6512 28 1 -0.3634 0.0060 1.0276 29 1 -0.3633 0.8870 -0.5190 30 1 -0.3633 -0.8929 -0.5087 31 1 5.6084 1.0127 0.5081 32 1 4.5511 2.4446 0.4997 33 1 7.7312 3.6902 -0.8717 34 1 5.1337 -1.8071 1.0389 35 1 4.6133 -2.5375 -0.4986 36 1 5.6554 -1.0944 -0.5066 37 1 1.1577 -4.6879 -0.8083 38 1 -0.6787 -7.0333 -1.2880 39 1 1.0200 -6.7999 -1.7654 40 1 0.5531 -8.2238 -0.8047 41 1 0.0628 -8.0550 1.4549 42 1 0.4336 -6.9065 3.5515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650248559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:26 Heat of formation + Delta-G solvation = 1.170696 kcal Electronic energy + Delta-G solvation = -27892.940771 eV Core-core repulsion = 23841.160759 eV Total energy + Delta-G solvation = -4051.780012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38353 -40.88619 -39.34449 -38.04486 -36.00196 -33.95175 -32.93390 -32.52325 -32.41503 -30.67952 -29.00893 -27.53756 -26.53907 -25.92342 -25.12376 -23.33929 -22.71154 -21.61679 -19.49851 -19.12390 -18.30098 -17.78600 -17.02944 -16.82868 -16.56108 -16.21811 -15.87880 -15.42481 -14.91361 -14.73413 -14.41425 -14.25026 -13.96010 -13.65198 -13.54491 -13.18948 -12.99537 -12.90078 -12.73129 -12.64097 -12.46887 -12.38434 -12.00947 -11.83645 -11.65226 -11.50589 -10.99665 -10.90776 -10.76608 -10.33086 -10.25536 -10.06836 -9.74965 -9.63632 -9.44778 -8.66485 -8.30422 -8.27002 -7.61782 -6.27453 -4.35522 0.54578 1.02612 1.98008 2.40883 2.80762 2.81901 3.19247 3.27030 3.30766 3.41366 3.66029 3.70222 3.88924 4.07431 4.28134 4.35162 4.48136 4.56544 4.77185 4.81054 5.05251 5.11198 5.23410 5.30147 5.41464 5.47852 5.64466 5.82076 5.97761 6.01906 6.03320 6.19472 6.20978 6.21479 6.34764 6.38377 6.60668 6.77656 6.98781 7.07385 7.39671 7.63488 7.84916 7.90090 7.95488 8.41612 8.50867 8.71336 9.30859 10.80309 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002795 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.346750 B =10015.477385 C =10328.370513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.058 3.942 3 N -0.280 5.280 4 N -0.316 5.316 5 C 0.257 3.743 6 C -0.538 4.538 7 H 0.066 0.934 8 C 0.066 3.934 9 N -0.890 5.890 10 Si 0.908 3.092 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.104 3.896 15 C -0.092 4.092 16 C -0.097 4.097 17 O -0.264 6.264 18 C 0.496 3.504 19 O -0.465 6.465 20 C -0.286 4.286 21 C 0.200 3.800 22 N -0.477 5.477 23 C 0.054 3.946 24 C 0.124 3.876 25 C -0.261 4.261 26 C 0.406 3.594 27 O -0.477 6.477 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.268 0.732 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.181 0.819 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.166 0.834 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.767 -25.811 -3.133 29.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 N -0.104 5.104 4 N -0.097 5.097 5 C 0.140 3.860 6 C -0.577 4.577 7 H 0.084 0.916 8 C -0.138 4.138 9 N -0.527 5.527 10 Si 0.735 3.265 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.029 4.029 15 C -0.150 4.150 16 C -0.151 4.151 17 O -0.177 6.177 18 C 0.339 3.661 19 O -0.349 6.349 20 C -0.295 4.295 21 C 0.069 3.931 22 N -0.163 5.163 23 C -0.088 4.088 24 C 0.000 4.000 25 C -0.285 4.285 26 C 0.291 3.709 27 O -0.357 6.357 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.198 0.802 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.183 0.817 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.303 -23.896 -2.351 27.450 hybrid contribution 0.384 -0.581 -0.948 1.176 sum -12.919 -24.477 -3.298 27.873 Atomic orbital electron populations 1.20046 0.87371 1.02619 1.02395 1.22242 0.96798 0.89985 1.01780 1.77344 0.87387 1.21686 1.23978 1.49298 1.05967 1.03614 1.50798 1.19786 0.77598 0.89418 0.99185 1.21344 1.13509 1.31674 0.91160 0.91569 1.24945 0.95680 0.94934 0.98242 1.69938 1.19183 1.32489 1.31109 0.86276 0.78356 0.78335 0.83568 1.19537 1.20600 1.20633 1.21012 0.95845 0.86323 0.99712 1.20416 0.94025 0.97581 1.02966 1.17509 0.90493 0.81938 1.25124 1.84657 1.77650 1.24343 1.31041 1.20942 0.75918 0.86348 0.82926 1.90912 1.44958 1.63032 1.36015 1.21680 1.18486 0.93837 0.95490 1.22540 0.87352 0.82424 1.00812 1.42783 1.54934 1.10725 1.07874 1.22527 1.03993 0.97562 0.84669 1.21732 0.95716 0.98372 0.84151 1.22464 1.10154 0.97606 0.98232 1.18186 0.77705 0.87360 0.87625 1.90858 1.44443 1.66598 1.33796 0.91156 0.90923 0.91169 0.92726 0.92503 0.92219 0.90689 0.90576 0.89302 0.80163 0.89888 0.88651 0.88902 0.81701 0.82684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.44 36.00 0.38 -0.69 16 2 C 0.06 1.23 7.22 -82.29 -0.59 0.64 16 3 N -0.28 -6.84 12.57 33.73 0.42 -6.42 16 4 N -0.32 -7.84 3.62 -58.04 -0.21 -8.05 16 5 C 0.26 6.80 5.84 -5.20 -0.03 6.77 16 6 C -0.54 -14.91 9.39 -34.44 -0.32 -15.24 16 7 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.25 13.29 55.43 0.74 -24.52 16 10 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.10 2.30 6.97 -81.77 -0.57 1.73 16 15 C -0.09 -1.67 9.89 36.00 0.36 -1.32 16 16 C -0.10 -2.04 5.35 -39.79 -0.21 -2.25 16 17 O -0.26 -4.62 9.41 -25.72 -0.24 -4.87 16 18 C 0.50 9.02 7.84 34.35 0.27 9.29 16 19 O -0.47 -10.80 15.35 -26.10 -0.40 -11.20 16 20 C -0.29 -3.88 6.05 -102.73 -0.62 -4.51 16 21 C 0.20 1.54 9.87 -16.53 -0.16 1.38 16 22 N -0.48 -2.06 2.97 -124.38 -0.37 -2.43 16 23 C 0.05 -0.01 10.52 59.85 0.63 0.62 16 24 C 0.12 0.56 10.17 -17.09 -0.17 0.38 16 25 C -0.26 -2.30 10.01 -39.47 -0.40 -2.70 16 26 C 0.41 6.00 6.97 -34.66 -0.24 5.76 16 27 O -0.48 -9.63 16.41 -15.19 -0.25 -9.88 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.05 1.44 7.69 -51.93 -0.40 1.04 16 32 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.66 7.76 -51.93 -0.40 1.26 16 37 H 0.18 0.97 7.55 -52.49 -0.40 0.58 16 38 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 39 H 0.09 -0.09 7.96 -51.93 -0.41 -0.50 16 40 H 0.09 -0.20 7.96 -51.92 -0.41 -0.61 16 41 H 0.17 0.00 7.97 -52.48 -0.42 -0.41 16 42 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -40.60 374.52 -6.85 -47.45 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -5.37 Total: -3.32 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.79 Total: 1.57 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.58 Total: -41.42 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.89 Total: -25.94 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -40.60 -6.85 -47.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650248559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.619 kcal (2) G-P(sol) polarization free energy of solvation -40.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds