Wall clock time and date at job start Tue Mar 31 2020 15:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30850 * 125.83252 * 2 1 4 4 N 1.40084 * 108.33769 * 180.15693 * 3 2 1 5 5 C 1.46491 * 126.06337 * 179.81724 * 4 3 2 6 6 C 1.50702 * 109.46957 * 269.68691 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 C 1.35792 * 107.86787 * 359.55392 * 4 3 2 15 15 C 1.50695 * 126.20911 * 180.28751 * 14 4 3 16 16 C 1.35641 * 107.58086 * 0.26129 * 14 4 3 17 17 O 1.36191 * 126.06179 * 180.02562 * 16 14 4 18 18 C 1.34740 * 116.99931 * 90.00217 * 17 16 14 19 19 O 1.21558 * 120.00016 * 359.97438 * 18 17 16 20 20 C 1.47144 * 119.99749 * 180.02562 * 18 17 16 21 21 C 1.38067 * 120.88888 * 359.71834 * 20 18 17 22 22 N 1.34318 * 120.36144 * 179.78681 * 21 20 18 23 23 C 1.46498 * 118.80354 * 180.26384 * 22 21 20 24 24 C 1.35591 * 122.39840 * 0.48214 * 22 21 20 25 25 C 1.34861 * 121.81233 * 359.78723 * 24 22 21 26 26 C 1.41667 * 119.34513 * 359.96681 * 25 24 22 27 27 O 1.22088 * 121.06931 * 179.97438 * 26 25 24 28 28 H 1.08994 * 109.47538 * 270.33186 * 1 2 3 29 29 H 1.09004 * 109.47113 * 30.33349 * 1 2 3 30 30 H 1.09000 * 109.46968 * 150.33085 * 1 2 3 31 31 H 1.09004 * 109.47166 * 149.68957 * 5 4 3 32 32 H 1.08994 * 109.47507 * 29.68663 * 5 4 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.47435 * 89.99548 * 15 14 4 35 35 H 1.08994 * 109.47282 * 209.99886 * 15 14 4 36 36 H 1.09007 * 109.46645 * 329.99901 * 15 14 4 37 37 H 1.07999 * 119.81931 * 359.97438 * 21 20 18 38 38 H 1.08994 * 109.47287 * 270.21452 * 23 22 21 39 39 H 1.09002 * 109.47260 * 30.21373 * 23 22 21 40 40 H 1.09007 * 109.47570 * 150.21276 * 23 22 21 41 41 H 1.08005 * 119.09752 * 179.75434 * 24 22 21 42 42 H 1.08000 * 120.32959 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2729 1.0608 0.0000 4 7 3.6090 0.6397 -0.0036 5 6 4.7874 1.5099 -0.0086 6 6 5.1916 1.8000 -1.4312 7 1 4.6268 1.3786 -2.2497 8 6 6.2787 2.6084 -1.6878 9 7 6.9662 3.1218 -0.6911 10 14 6.7750 2.9742 -3.4511 11 1 5.8464 2.2820 -4.3805 12 1 6.7127 4.4387 -3.6892 13 1 8.1603 2.4931 -3.6854 14 6 3.6178 -0.7181 0.0042 15 6 4.8395 -1.6004 0.0099 16 6 2.3275 -1.1363 0.0066 17 8 1.9042 -2.4307 0.0146 18 6 1.7139 -3.0046 1.2188 19 8 1.9199 -2.3692 2.2343 20 6 1.2578 -4.4010 1.3043 21 6 1.0137 -5.1381 0.1627 22 7 0.6017 -6.4134 0.2532 23 6 0.3585 -7.1657 -0.9801 24 6 0.3985 -7.0285 1.4444 25 6 0.6034 -6.3935 2.6164 26 6 1.0437 -5.0470 2.6088 27 8 1.2386 -4.4420 3.6512 28 1 -0.3634 0.0060 1.0276 29 1 -0.3633 0.8870 -0.5190 30 1 -0.3633 -0.8929 -0.5087 31 1 5.6084 1.0127 0.5081 32 1 4.5511 2.4446 0.4997 33 1 7.7312 3.6902 -0.8717 34 1 5.1337 -1.8071 1.0389 35 1 4.6133 -2.5375 -0.4986 36 1 5.6554 -1.0944 -0.5066 37 1 1.1577 -4.6879 -0.8083 38 1 -0.6787 -7.0333 -1.2880 39 1 1.0200 -6.7999 -1.7654 40 1 0.5531 -8.2238 -0.8047 41 1 0.0628 -8.0550 1.4549 42 1 0.4336 -6.9065 3.5515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650248559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:25 Heat of formation + Delta-G solvation = -26.791884 kcal Electronic energy + Delta-G solvation = -27894.153319 eV Core-core repulsion = 23841.160759 eV Total energy + Delta-G solvation = -4052.992560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.68616 -41.95622 -40.77304 -39.04600 -37.50623 -35.89891 -34.37376 -33.64741 -33.20488 -32.32940 -30.70606 -28.32239 -27.77745 -27.62230 -26.14578 -24.77845 -23.95884 -22.81569 -21.02161 -20.82447 -19.36841 -18.91010 -18.62730 -17.99181 -17.81035 -17.21747 -16.87964 -16.72822 -16.31375 -16.13518 -15.91830 -15.43581 -14.95207 -14.87202 -14.69550 -14.52728 -14.27623 -14.20680 -14.11564 -13.69449 -13.51991 -13.42746 -13.30448 -13.16506 -13.13892 -12.86830 -12.72589 -12.64802 -12.45483 -12.28935 -11.81246 -11.66752 -11.30663 -10.77609 -10.75108 -10.51774 -10.07533 -9.35043 -9.14482 -8.37360 -6.55853 -0.28427 0.38160 0.73431 1.17333 1.37008 1.38507 1.50946 1.54249 1.58543 1.64748 2.27486 2.33176 2.71142 2.93315 3.39327 3.53797 3.63756 3.76352 3.77252 3.98207 4.02428 4.32172 4.39291 4.45497 4.53072 4.58671 4.62799 4.66820 4.67761 4.75704 4.78651 4.81044 4.83710 4.97295 4.98165 5.16782 5.23887 5.47372 5.48760 5.70385 5.72829 5.79003 5.82181 6.05651 6.53914 6.75625 6.98724 7.06283 7.15524 8.70623 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002795 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.346750 B =10015.477385 C =10328.370513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.057 3.943 3 N -0.324 5.324 4 N -0.343 5.343 5 C 0.274 3.726 6 C -0.554 4.554 7 H 0.056 0.944 8 C 0.020 3.980 9 N -0.921 5.921 10 Si 0.980 3.020 11 H -0.268 1.268 12 H -0.275 1.275 13 H -0.266 1.266 14 C 0.089 3.911 15 C -0.087 4.087 16 C -0.098 4.098 17 O -0.245 6.245 18 C 0.499 3.501 19 O -0.533 6.533 20 C -0.346 4.346 21 C 0.253 3.747 22 N -0.456 5.456 23 C 0.040 3.960 24 C 0.168 3.832 25 C -0.291 4.291 26 C 0.383 3.617 27 O -0.568 6.568 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.025 0.975 33 H 0.275 0.725 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.214 0.786 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.126 0.874 41 H 0.231 0.769 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.392 -30.480 -7.166 34.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 N -0.148 5.148 4 N -0.124 5.124 5 C 0.155 3.845 6 C -0.592 4.592 7 H 0.074 0.926 8 C -0.181 4.181 9 N -0.559 5.559 10 Si 0.803 3.197 11 H -0.192 1.192 12 H -0.201 1.201 13 H -0.191 1.191 14 C -0.043 4.043 15 C -0.145 4.145 16 C -0.152 4.152 17 O -0.157 6.157 18 C 0.346 3.654 19 O -0.421 6.421 20 C -0.354 4.354 21 C 0.117 3.883 22 N -0.138 5.138 23 C -0.098 4.098 24 C 0.044 3.956 25 C -0.314 4.314 26 C 0.276 3.724 27 O -0.457 6.457 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.230 0.770 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.144 0.856 41 H 0.248 0.752 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.964 -28.663 -6.446 32.970 hybrid contribution 0.726 0.561 0.156 0.931 sum -14.238 -28.102 -6.289 32.125 Atomic orbital electron populations 1.20238 0.83910 1.04847 1.03167 1.23089 0.98955 0.89452 0.99456 1.77260 0.87616 1.23634 1.26287 1.49092 1.05723 1.04467 1.53116 1.19330 0.78203 0.88390 0.98527 1.21438 1.14054 1.32487 0.91182 0.92560 1.25858 0.95240 0.94208 1.02826 1.70038 1.19605 1.32780 1.33428 0.85178 0.78463 0.78193 0.77853 1.19222 1.20059 1.19069 1.21685 0.97810 0.85690 0.99110 1.20504 0.92363 0.98191 1.03395 1.17598 0.90133 0.83410 1.24064 1.84656 1.77383 1.22490 1.31175 1.21720 0.74253 0.87708 0.81708 1.90885 1.48527 1.64860 1.37857 1.21353 1.24410 0.92319 0.97332 1.22824 0.82655 0.83044 0.99827 1.43489 1.50591 1.09591 1.10105 1.23089 1.05794 0.98683 0.82280 1.22557 0.90753 0.99961 0.82354 1.22357 1.12828 0.95202 1.00992 1.19054 0.76795 0.89466 0.87092 1.90808 1.49731 1.68919 1.36216 0.90945 0.89494 0.88113 0.93546 0.95699 0.91638 0.90548 0.87224 0.90077 0.76968 0.87751 0.87168 0.85572 0.75229 0.81881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.03 10.44 71.23 0.74 -1.29 16 2 C 0.06 2.49 7.22 43.17 0.31 2.80 16 3 N -0.32 -16.68 12.57 -47.20 -0.59 -17.27 16 4 N -0.34 -18.03 3.62 -337.53 -1.22 -19.25 16 5 C 0.27 15.45 5.84 85.64 0.50 15.95 16 6 C -0.55 -31.81 9.39 25.60 0.24 -31.56 16 7 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 8 C 0.02 1.09 5.46 84.66 0.46 1.55 16 9 N -0.92 -53.55 13.29 21.45 0.28 -53.26 16 10 Si 0.98 43.30 29.54 68.60 2.03 45.33 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 14 C 0.09 4.09 6.97 41.34 0.29 4.38 16 15 C -0.09 -3.25 9.89 71.23 0.70 -2.54 16 16 C -0.10 -4.22 5.35 22.14 0.12 -4.10 16 17 O -0.24 -8.49 9.41 -3.26 -0.03 -8.52 16 18 C 0.50 18.83 7.84 70.16 0.55 19.38 16 19 O -0.53 -26.81 15.35 26.14 0.40 -26.41 16 20 C -0.35 -9.30 6.05 -18.64 -0.11 -9.41 16 21 C 0.25 2.83 9.87 84.27 0.83 3.67 16 22 N -0.46 -1.02 2.97 -547.41 -1.63 -2.64 16 23 C 0.04 -0.34 10.52 127.77 1.34 1.00 16 24 C 0.17 0.53 10.17 83.34 0.85 1.37 16 25 C -0.29 -4.66 10.01 22.34 0.22 -4.44 16 26 C 0.38 11.91 6.97 25.46 0.18 12.09 16 27 O -0.57 -25.63 16.41 13.55 0.22 -25.40 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.05 2.63 7.69 -2.38 -0.02 2.61 16 32 H 0.02 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 34 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 35 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.08 3.14 7.76 -2.38 -0.02 3.12 16 37 H 0.21 1.08 7.55 -2.91 -0.02 1.05 16 38 H 0.10 -1.11 8.14 -2.39 -0.02 -1.13 16 39 H 0.11 -1.09 7.96 -2.39 -0.02 -1.10 16 40 H 0.13 -1.71 7.96 -2.38 -0.02 -1.73 16 41 H 0.23 -2.06 7.97 -2.91 -0.02 -2.09 16 42 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -103.61 374.52 7.74 -95.87 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: 1.05 Total: 2.71 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 7.23 Total: 8.85 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -3.16 Total: -92.42 kcal Atomic # 8 Polarization: -60.92 SS G_CDS: 0.59 Total: -60.33 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -103.61 7.74 -95.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650248559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.076 kcal (2) G-P(sol) polarization free energy of solvation -103.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds