Wall clock time and date at job start Tue Mar 31 2020 16:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99807 * 2 1 4 4 N 1.46501 * 109.47359 * 124.99702 * 3 2 1 5 5 C 1.46501 * 119.99628 * 269.99975 * 4 3 2 6 6 C 1.50699 * 109.46792 * 269.99609 * 5 4 3 7 7 H 1.08002 * 120.00154 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99734 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99983 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00365 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47275 * 89.99659 * 10 8 6 12 12 H 1.48497 * 109.47829 * 209.99989 * 10 8 6 13 13 H 1.48501 * 109.47175 * 330.00260 * 10 8 6 14 14 C 1.34776 * 120.00123 * 89.99303 * 4 3 2 15 15 O 1.21591 * 119.99821 * 179.97438 * 14 4 3 16 16 N 1.34774 * 119.99712 * 0.02562 * 14 4 3 17 17 C 1.40183 * 119.99655 * 185.62449 * 16 14 4 18 18 C 1.38901 * 120.12252 * 24.76039 * 17 16 14 19 19 C 1.38200 * 120.17522 * 179.97438 * 18 17 16 20 20 C 1.38309 * 120.25724 * 359.97438 * 19 18 17 21 21 C 1.38747 * 119.91050 * 359.77245 * 20 19 18 22 22 C 1.38924 * 120.12206 * 204.73248 * 17 16 14 23 23 O 1.36054 * 120.65457 * 0.02562 * 22 17 16 24 24 C 1.42997 * 116.71368 * 147.19414 * 23 22 17 25 25 C 1.50755 * 109.61911 * 46.32464 * 24 23 22 26 26 O 1.21297 * 120.13115 * 148.76863 * 25 24 23 27 27 N 1.35082 * 119.73689 * 328.74346 * 25 24 23 28 28 H 1.08006 * 119.99937 * 180.02562 * 1 2 3 29 29 H 1.07992 * 120.00194 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99921 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.46832 * 4.99287 * 3 2 1 32 32 H 1.09003 * 109.46416 * 244.99630 * 3 2 1 33 33 H 1.08996 * 109.47500 * 29.99871 * 5 4 3 34 34 H 1.09000 * 109.46910 * 150.00301 * 5 4 3 35 35 H 0.97000 * 120.00090 * 180.02562 * 9 8 6 36 36 H 0.96997 * 120.00410 * 5.61949 * 16 14 4 37 37 H 1.07994 * 119.91345 * 359.97438 * 18 17 16 38 38 H 1.07995 * 119.87051 * 180.02562 * 19 18 17 39 39 H 1.07998 * 120.02958 * 180.02562 * 20 19 18 40 40 H 1.09006 * 109.43996 * 286.28652 * 24 23 22 41 41 H 1.09001 * 109.44945 * 166.37472 * 24 23 22 42 42 H 0.97003 * 120.49264 * 181.67670 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5586 1.8652 2.4248 6 6 2.8440 3.3438 2.4802 7 1 3.3032 3.8372 1.6363 8 6 2.5190 4.0668 3.6083 9 7 2.7676 5.3574 3.6566 10 14 1.7256 3.2134 5.0683 11 1 2.7823 2.7232 5.9893 12 1 0.8492 4.1732 5.7866 13 1 0.9146 2.0652 4.5897 14 6 4.2496 0.8663 0.9826 15 8 5.0218 0.8890 1.9215 16 7 4.6499 0.3762 -0.2074 17 6 5.9145 -0.2157 -0.3321 18 6 6.5395 -0.7653 0.7799 19 6 7.7860 -1.3496 0.6582 20 6 8.4190 -1.3915 -0.5709 21 6 7.7989 -0.8494 -1.6873 22 6 6.5470 -0.2552 -1.5684 23 8 5.9514 0.2775 -2.6696 24 6 6.8156 0.8543 -3.6521 25 6 7.9663 -0.0805 -3.9254 26 8 8.4743 -0.1152 -5.0264 27 7 8.4298 -0.8789 -2.9393 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9352 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3585 2.1316 0.0894 32 1 2.6213 1.4025 -0.9314 33 1 1.4886 1.6968 2.5459 34 1 3.0988 1.3606 3.2260 35 1 2.5393 5.8659 4.4504 36 1 4.0629 0.4330 -0.9776 37 1 6.0502 -0.7360 1.7422 38 1 8.2673 -1.7758 1.5259 39 1 9.3929 -1.8494 -0.6619 40 1 7.2003 1.8053 -3.2834 41 1 6.2573 1.0217 -4.5731 42 1 9.1852 -1.4670 -3.0962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662467062.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:52 Heat of formation + Delta-G solvation = -23.635817 kcal Electronic energy + Delta-G solvation = -28252.823340 eV Core-core repulsion = 24199.967637 eV Total energy + Delta-G solvation = -4052.855703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67445 -40.20312 -38.84456 -37.58276 -36.22402 -35.46414 -34.03040 -33.18510 -32.18607 -30.27150 -29.45885 -28.01077 -27.85146 -25.70042 -23.79907 -23.50168 -21.94696 -20.52504 -20.12246 -19.27465 -18.97372 -18.43297 -17.52433 -17.15461 -16.94886 -16.35593 -16.08538 -15.40425 -15.27016 -15.08105 -14.91609 -14.50697 -14.45497 -14.42329 -13.99065 -13.43984 -13.37371 -13.07000 -12.88519 -12.37965 -12.22999 -12.04477 -11.74401 -11.66746 -11.55913 -11.38759 -11.12632 -10.97430 -10.56895 -10.35309 -10.24072 -10.07634 -9.60685 -9.40287 -9.34209 -8.61574 -8.13117 -8.07392 -7.69357 -6.11294 -4.10531 0.95089 1.15033 2.06859 2.26390 2.46442 3.00564 3.06129 3.27639 3.33592 3.35549 3.45032 3.77523 3.87212 4.24053 4.37037 4.59594 4.68634 4.83331 4.93455 5.05252 5.19638 5.21037 5.23738 5.32350 5.42535 5.43446 5.78569 5.85818 5.96333 6.03522 6.11746 6.35247 6.46155 6.53243 6.59631 6.65412 6.75503 6.77249 6.82665 7.15812 7.19213 7.38537 7.49060 7.57427 8.31828 8.43516 8.91039 9.00580 9.48414 11.02015 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.003268 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.395318 B = 8565.916242 C = 9063.667941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.173 4.173 3 C 0.135 3.865 4 N -0.595 5.595 5 C 0.232 3.768 6 C -0.531 4.531 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.702 3.298 15 O -0.563 6.563 16 N -0.683 5.683 17 C 0.207 3.793 18 C -0.126 4.126 19 C -0.083 4.083 20 C -0.154 4.154 21 C 0.111 3.889 22 C 0.029 3.971 23 O -0.304 6.304 24 C 0.052 3.948 25 C 0.493 3.507 26 O -0.519 6.519 27 N -0.657 5.657 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.409 0.591 37 H 0.162 0.838 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.145 0.855 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.898 -14.751 -11.891 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.192 4.192 3 C 0.011 3.989 4 N -0.328 5.328 5 C 0.111 3.889 6 C -0.570 4.570 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.405 3.595 15 O -0.440 6.440 16 N -0.331 5.331 17 C 0.108 3.892 18 C -0.148 4.148 19 C -0.103 4.103 20 C -0.175 4.175 21 C 0.015 3.985 22 C -0.020 4.020 23 O -0.219 6.219 24 C -0.026 4.026 25 C 0.280 3.720 26 O -0.394 6.394 27 N -0.304 5.304 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.247 0.753 37 H 0.179 0.821 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.118 0.882 41 H 0.162 0.838 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 5.249 -14.356 -11.700 19.249 hybrid contribution -0.096 -0.417 0.250 0.496 sum 5.153 -14.773 -11.450 19.388 Atomic orbital electron populations 1.23856 0.95798 1.01937 1.00009 1.23442 0.96511 0.98909 1.00368 1.20592 0.93246 0.95861 0.89171 1.47237 1.08825 1.63003 1.13720 1.19632 0.94869 0.95029 0.79321 1.21336 1.41310 0.91149 1.03160 0.90723 1.24835 0.95252 0.94708 0.98105 1.69894 1.47678 1.06621 1.29270 0.86870 0.79876 0.79680 0.83382 1.19855 1.21090 1.18993 1.15836 0.83049 0.78435 0.82223 1.90862 1.52297 1.61473 1.39342 1.42866 1.15964 1.61582 1.12723 1.16886 0.86711 0.95238 0.90342 1.21532 0.96208 0.97569 0.99457 1.20901 0.94503 0.98189 0.96678 1.20570 1.00831 1.05090 0.91043 1.17644 0.92531 1.02478 0.85852 1.17960 0.92663 1.04230 0.87175 1.86174 1.33342 1.74110 1.28236 1.23151 0.90257 0.95369 0.93808 1.21604 0.84965 0.81413 0.84039 1.90805 1.59433 1.66991 1.22163 1.43672 1.34440 1.42074 1.10187 0.88638 0.88120 0.87625 0.88653 0.91036 0.94881 0.94305 0.92531 0.75326 0.82056 0.84757 0.85205 0.88231 0.83764 0.74586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 14.32 29.01 0.42 -1.61 16 2 C -0.17 -2.19 9.85 -36.03 -0.35 -2.54 16 3 C 0.14 2.01 5.66 -5.19 -0.03 1.98 16 4 N -0.59 -11.57 2.44 -182.18 -0.44 -12.01 16 5 C 0.23 5.41 4.23 -5.19 -0.02 5.39 16 6 C -0.53 -14.75 9.94 -34.44 -0.34 -15.10 16 7 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 8 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 9 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 10 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.27 -5.95 6.54 56.52 0.37 -5.59 16 14 C 0.70 13.71 8.08 -86.92 -0.70 13.00 16 15 O -0.56 -12.93 13.09 5.29 0.07 -12.86 16 16 N -0.68 -10.48 5.18 -14.14 -0.07 -10.55 16 17 C 0.21 3.01 6.44 -83.54 -0.54 2.47 16 18 C -0.13 -1.79 8.72 -39.35 -0.34 -2.14 16 19 C -0.08 -0.91 10.03 -39.57 -0.40 -1.31 16 20 C -0.15 -1.50 9.96 -39.37 -0.39 -1.89 16 21 C 0.11 1.22 6.55 -83.51 -0.55 0.68 16 22 C 0.03 0.37 6.45 -39.01 -0.25 0.12 16 23 O -0.30 -3.57 9.90 -19.91 -0.20 -3.76 16 24 C 0.05 0.50 7.17 36.03 0.26 0.76 16 25 C 0.49 5.47 7.94 -10.82 -0.09 5.39 16 26 O -0.52 -7.12 17.95 5.54 0.10 -7.02 16 27 N -0.66 -6.45 5.47 -9.68 -0.05 -6.50 16 28 H 0.10 0.93 8.06 -52.48 -0.42 0.51 16 29 H 0.10 1.12 7.84 -52.49 -0.41 0.71 16 30 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.10 1.48 7.72 -51.93 -0.40 1.07 16 32 H 0.07 0.90 6.29 -51.93 -0.33 0.57 16 33 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 34 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.41 5.35 6.06 -40.82 -0.25 5.11 16 37 H 0.16 2.64 5.79 -52.49 -0.30 2.33 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.42 3.18 8.89 -40.82 -0.36 2.82 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -34.64 358.46 -7.43 -42.07 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.91 Total: 8.09 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -3.43 Total: 7.19 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.20 Total: -55.41 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.03 Total: -23.65 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.64 -7.43 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662467062.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.435 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds