Wall clock time and date at job start Tue Mar 31 2020 16:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99807 * 2 1 4 4 N 1.46501 * 109.47359 * 124.99702 * 3 2 1 5 5 C 1.46501 * 119.99628 * 269.99975 * 4 3 2 6 6 C 1.50699 * 109.46792 * 269.99609 * 5 4 3 7 7 H 1.08002 * 120.00154 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99734 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99983 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00365 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47275 * 89.99659 * 10 8 6 12 12 H 1.48497 * 109.47829 * 209.99989 * 10 8 6 13 13 H 1.48501 * 109.47175 * 330.00260 * 10 8 6 14 14 C 1.34776 * 120.00123 * 89.99303 * 4 3 2 15 15 O 1.21591 * 119.99821 * 179.97438 * 14 4 3 16 16 N 1.34774 * 119.99712 * 0.02562 * 14 4 3 17 17 C 1.40183 * 119.99655 * 185.62449 * 16 14 4 18 18 C 1.38901 * 120.12252 * 24.76039 * 17 16 14 19 19 C 1.38200 * 120.17522 * 179.97438 * 18 17 16 20 20 C 1.38309 * 120.25724 * 359.97438 * 19 18 17 21 21 C 1.38747 * 119.91050 * 359.77245 * 20 19 18 22 22 C 1.38924 * 120.12206 * 204.73248 * 17 16 14 23 23 O 1.36054 * 120.65457 * 0.02562 * 22 17 16 24 24 C 1.42997 * 116.71368 * 147.19414 * 23 22 17 25 25 C 1.50755 * 109.61911 * 46.32464 * 24 23 22 26 26 O 1.21297 * 120.13115 * 148.76863 * 25 24 23 27 27 N 1.35082 * 119.73689 * 328.74346 * 25 24 23 28 28 H 1.08006 * 119.99937 * 180.02562 * 1 2 3 29 29 H 1.07992 * 120.00194 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99921 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.46832 * 4.99287 * 3 2 1 32 32 H 1.09003 * 109.46416 * 244.99630 * 3 2 1 33 33 H 1.08996 * 109.47500 * 29.99871 * 5 4 3 34 34 H 1.09000 * 109.46910 * 150.00301 * 5 4 3 35 35 H 0.97000 * 120.00090 * 180.02562 * 9 8 6 36 36 H 0.96997 * 120.00410 * 5.61949 * 16 14 4 37 37 H 1.07994 * 119.91345 * 359.97438 * 18 17 16 38 38 H 1.07995 * 119.87051 * 180.02562 * 19 18 17 39 39 H 1.07998 * 120.02958 * 180.02562 * 20 19 18 40 40 H 1.09006 * 109.43996 * 286.28652 * 24 23 22 41 41 H 1.09001 * 109.44945 * 166.37472 * 24 23 22 42 42 H 0.97003 * 120.49264 * 181.67670 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5586 1.8652 2.4248 6 6 2.8440 3.3438 2.4802 7 1 3.3032 3.8372 1.6363 8 6 2.5190 4.0668 3.6083 9 7 2.7676 5.3574 3.6566 10 14 1.7256 3.2134 5.0683 11 1 2.7823 2.7232 5.9893 12 1 0.8492 4.1732 5.7866 13 1 0.9146 2.0652 4.5897 14 6 4.2496 0.8663 0.9826 15 8 5.0218 0.8890 1.9215 16 7 4.6499 0.3762 -0.2074 17 6 5.9145 -0.2157 -0.3321 18 6 6.5395 -0.7653 0.7799 19 6 7.7860 -1.3496 0.6582 20 6 8.4190 -1.3915 -0.5709 21 6 7.7989 -0.8494 -1.6873 22 6 6.5470 -0.2552 -1.5684 23 8 5.9514 0.2775 -2.6696 24 6 6.8156 0.8543 -3.6521 25 6 7.9663 -0.0805 -3.9254 26 8 8.4743 -0.1152 -5.0264 27 7 8.4298 -0.8789 -2.9393 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9352 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3585 2.1316 0.0894 32 1 2.6213 1.4025 -0.9314 33 1 1.4886 1.6968 2.5459 34 1 3.0988 1.3606 3.2260 35 1 2.5393 5.8659 4.4504 36 1 4.0629 0.4330 -0.9776 37 1 6.0502 -0.7360 1.7422 38 1 8.2673 -1.7758 1.5259 39 1 9.3929 -1.8494 -0.6619 40 1 7.2003 1.8053 -3.2834 41 1 6.2573 1.0217 -4.5731 42 1 9.1852 -1.4670 -3.0962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662467062.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:51 Heat of formation + Delta-G solvation = -48.537392 kcal Electronic energy + Delta-G solvation = -28253.903154 eV Core-core repulsion = 24199.967637 eV Total energy + Delta-G solvation = -4053.935516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.61546 -41.50770 -39.88810 -38.52333 -37.48532 -36.66443 -35.30305 -34.77219 -33.78941 -31.26822 -30.70221 -29.50320 -28.74927 -26.99957 -25.02925 -24.72896 -23.36279 -21.62635 -21.15643 -20.43827 -19.97555 -19.45956 -19.07774 -18.74808 -18.07125 -17.47545 -17.14883 -16.62941 -16.49721 -16.12933 -16.04328 -15.88134 -15.55594 -15.49585 -15.35020 -14.86242 -14.50216 -14.35241 -14.09582 -13.85137 -13.52758 -13.22324 -13.15485 -12.98690 -12.68377 -12.52649 -12.40956 -12.29186 -12.17251 -11.93169 -11.71071 -11.27818 -11.23785 -10.87633 -10.79433 -10.35121 -9.56903 -9.04608 -8.88166 -8.30431 -6.35482 0.01278 0.18745 1.17479 1.22495 1.37322 1.40423 1.48818 1.57298 1.84203 2.12774 2.18326 2.34274 2.78211 2.86410 3.00643 3.05472 3.72264 3.92455 3.99940 4.03082 4.14604 4.19621 4.32107 4.34024 4.39329 4.50605 4.72354 4.83379 4.90302 4.93093 4.98540 5.06358 5.28117 5.44502 5.45472 5.49022 5.56572 5.69202 5.71318 5.74255 5.89015 5.95214 6.21656 6.28841 6.65954 6.67627 6.92779 7.25843 7.53624 8.86518 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.003268 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.395318 B = 8565.916242 C = 9063.667941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.186 4.186 3 C 0.132 3.868 4 N -0.603 5.603 5 C 0.244 3.756 6 C -0.535 4.535 7 H 0.028 0.972 8 C 0.013 3.987 9 N -0.946 5.946 10 Si 0.946 3.054 11 H -0.275 1.275 12 H -0.278 1.278 13 H -0.236 1.236 14 C 0.699 3.301 15 O -0.607 6.607 16 N -0.669 5.669 17 C 0.175 3.825 18 C -0.145 4.145 19 C -0.079 4.079 20 C -0.133 4.133 21 C 0.110 3.890 22 C 0.027 3.973 23 O -0.311 6.311 24 C 0.049 3.951 25 C 0.493 3.507 26 O -0.547 6.547 27 N -0.646 5.646 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.025 0.975 35 H 0.268 0.732 36 H 0.419 0.581 37 H 0.134 0.866 38 H 0.161 0.839 39 H 0.169 0.831 40 H 0.110 0.890 41 H 0.169 0.831 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 -17.150 -12.509 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.205 4.205 3 C 0.010 3.990 4 N -0.336 5.336 5 C 0.122 3.878 6 C -0.574 4.574 7 H 0.046 0.954 8 C -0.185 4.185 9 N -0.586 5.586 10 Si 0.769 3.231 11 H -0.201 1.201 12 H -0.203 1.203 13 H -0.159 1.159 14 C 0.401 3.599 15 O -0.486 6.486 16 N -0.318 5.318 17 C 0.078 3.922 18 C -0.167 4.167 19 C -0.098 4.098 20 C -0.155 4.155 21 C 0.014 3.986 22 C -0.022 4.022 23 O -0.226 6.226 24 C -0.029 4.029 25 C 0.282 3.718 26 O -0.424 6.424 27 N -0.294 5.294 28 H 0.136 0.864 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.258 0.742 37 H 0.152 0.848 38 H 0.178 0.822 39 H 0.187 0.813 40 H 0.128 0.872 41 H 0.186 0.814 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 5.159 -16.803 -12.390 21.505 hybrid contribution 0.040 0.336 0.311 0.460 sum 5.199 -16.467 -12.080 21.074 Atomic orbital electron populations 1.24088 0.95315 1.03134 0.97397 1.23250 0.96865 0.97733 1.02662 1.20791 0.92781 0.97095 0.88336 1.47172 1.09777 1.62870 1.13742 1.19250 0.95493 0.91873 0.81174 1.21567 1.40492 0.93541 1.01777 0.95371 1.25811 0.95934 0.95306 1.01480 1.70052 1.49494 1.08565 1.30491 0.85742 0.79087 0.79385 0.78911 1.20050 1.20292 1.15930 1.15985 0.82678 0.78329 0.82888 1.90828 1.53469 1.63235 1.41103 1.42532 1.16692 1.61087 1.11457 1.17074 0.86761 0.96929 0.91461 1.21449 0.97729 0.99153 0.98321 1.21173 0.93164 0.97214 0.98282 1.20965 1.01735 1.03040 0.89712 1.17745 0.92023 1.02211 0.86668 1.17986 0.93140 1.04271 0.86826 1.86164 1.34044 1.74237 1.28161 1.23405 0.90109 0.95147 0.94223 1.21808 0.84948 0.81405 0.83683 1.90800 1.60451 1.67957 1.23200 1.43584 1.34466 1.41889 1.09451 0.86377 0.87935 0.87006 0.89594 0.89140 0.93035 0.95734 0.92332 0.74203 0.84813 0.82177 0.81344 0.87234 0.81361 0.73195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 14.32 67.78 0.97 -2.31 16 2 C -0.19 -4.42 9.85 25.65 0.25 -4.17 16 3 C 0.13 3.90 5.66 85.63 0.48 4.39 16 4 N -0.60 -23.94 2.44 -848.57 -2.07 -26.01 16 5 C 0.24 11.55 4.23 85.63 0.36 11.91 16 6 C -0.54 -30.85 9.94 25.60 0.25 -30.60 16 7 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 8 C 0.01 0.74 5.47 84.65 0.46 1.20 16 9 N -0.95 -59.15 13.96 21.45 0.30 -58.86 16 10 Si 0.95 43.44 27.47 68.60 1.88 45.32 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 14 C 0.70 28.23 8.08 179.06 1.45 29.68 16 15 O -0.61 -29.21 13.09 -4.00 -0.05 -29.26 16 16 N -0.67 -20.91 5.18 -316.92 -1.64 -22.55 16 17 C 0.18 5.11 6.44 38.13 0.25 5.35 16 18 C -0.14 -4.16 8.72 22.42 0.20 -3.96 16 19 C -0.08 -1.59 10.03 22.28 0.22 -1.36 16 20 C -0.13 -2.18 9.96 22.41 0.22 -1.95 16 21 C 0.11 2.17 6.55 38.12 0.25 2.42 16 22 C 0.03 0.66 6.45 22.64 0.15 0.80 16 23 O -0.31 -6.92 9.90 -94.17 -0.93 -7.86 16 24 C 0.05 0.84 7.17 71.25 0.51 1.36 16 25 C 0.49 10.06 7.94 87.63 0.70 10.75 16 26 O -0.55 -14.19 17.95 -3.08 -0.06 -14.25 16 27 N -0.65 -11.10 5.47 -302.75 -1.66 -12.75 16 28 H 0.12 1.90 8.06 -2.91 -0.02 1.87 16 29 H 0.10 2.05 7.84 -2.91 -0.02 2.03 16 30 H 0.11 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.09 2.67 7.72 -2.39 -0.02 2.65 16 32 H 0.09 2.25 6.29 -2.39 -0.01 2.23 16 33 H 0.05 2.24 7.13 -2.39 -0.02 2.23 16 34 H 0.02 1.24 6.85 -2.39 -0.02 1.22 16 35 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.42 10.96 6.06 -92.71 -0.56 10.40 16 37 H 0.13 4.62 5.79 -2.91 -0.02 4.61 16 38 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 39 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.17 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.43 5.29 8.89 -92.71 -0.82 4.46 16 Total: -1.00 -79.11 358.46 2.15 -76.96 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.35 Total: 25.75 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 6.72 Total: 23.50 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -5.07 Total: -120.17 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -1.04 Total: -51.37 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Total: -79.11 2.15 -76.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662467062.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.426 kcal (2) G-P(sol) polarization free energy of solvation -79.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds