Wall clock time and date at job start Tue Mar 31 2020 16:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47169 * 2 1 4 4 H 1.08998 * 109.47049 * 304.99789 * 3 2 1 5 5 C 1.52997 * 109.47337 * 184.99426 * 3 2 1 6 6 N 1.46498 * 109.47611 * 184.99644 * 5 3 2 7 7 C 1.34776 * 120.00143 * 179.97438 * 6 5 3 8 8 O 1.21549 * 120.00201 * 0.02562 * 7 6 5 9 9 C 1.47846 * 119.99745 * 180.02562 * 7 6 5 10 10 C 1.40021 * 120.55367 * 179.97438 * 9 7 6 11 11 C 1.38361 * 118.28541 * 179.70393 * 10 9 7 12 12 C 1.38357 * 119.29972 * 0.27997 * 11 10 9 13 13 C 1.50700 * 119.45540 * 179.97438 * 12 11 10 14 14 F 1.39894 * 109.47532 * 89.99871 * 13 12 11 15 15 F 1.39900 * 109.47108 * 210.00057 * 13 12 11 16 16 F 1.39898 * 109.47411 * 329.99738 * 13 12 11 17 17 N 1.31916 * 121.08079 * 0.02562 * 12 11 10 18 18 C 1.31690 * 121.88251 * 359.97438 * 17 12 11 19 19 N 1.46500 * 109.47235 * 64.99535 * 3 2 1 20 20 C 1.36932 * 120.00379 * 274.99890 * 19 3 2 21 21 H 1.08006 * 119.99887 * 359.97438 * 20 19 3 22 22 C 1.38813 * 120.00550 * 179.97438 * 20 19 3 23 23 N 1.31619 * 119.99762 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00272 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47002 * 60.00074 * 24 22 20 26 26 H 1.48500 * 109.47128 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46900 * 300.00032 * 24 22 20 28 28 H 1.09002 * 109.46661 * 60.00723 * 1 2 3 29 29 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47183 * 299.99979 * 1 2 3 31 31 H 1.08996 * 109.47161 * 239.99056 * 2 1 3 32 32 H 1.09007 * 109.46510 * 119.99997 * 2 1 3 33 33 H 1.09006 * 109.46892 * 64.99603 * 5 3 2 34 34 H 1.09003 * 109.47622 * 305.00349 * 5 3 2 35 35 H 0.96998 * 119.99815 * 0.02562 * 6 5 3 36 36 H 1.08002 * 120.86196 * 359.97438 * 10 9 7 37 37 H 1.08003 * 120.34925 * 180.25565 * 11 10 9 38 38 H 1.08007 * 119.71871 * 180.02562 * 18 17 12 39 39 H 0.97005 * 120.00059 * 94.99986 * 19 3 2 40 40 H 0.96997 * 120.00359 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 6 3.5648 1.4443 -0.1256 6 7 4.0631 2.8167 -0.0059 7 6 5.3858 3.0628 -0.0857 8 8 6.1653 2.1461 -0.2574 9 6 5.8886 4.4479 0.0357 10 6 7.2604 4.7167 -0.0449 11 6 7.6788 6.0307 0.0687 12 6 6.7380 7.0265 0.2622 13 6 7.1898 8.4587 0.3870 14 9 7.2185 9.0508 -0.8802 15 9 6.2997 9.1586 1.2086 16 9 8.4706 8.4965 0.9484 17 7 5.4521 6.7426 0.3404 18 6 5.0048 5.5082 0.2383 19 7 1.6524 2.0975 1.2517 20 6 0.4157 2.6735 1.3687 21 1 -0.2739 2.6453 0.5379 22 6 0.0481 3.2937 2.5549 23 7 0.8886 3.3286 3.5672 24 14 -1.6393 4.0789 2.7146 25 1 -2.6870 3.0465 2.5100 26 1 -1.7840 4.6701 4.0692 27 1 -1.7881 5.1448 1.6914 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.8500 1.0376 -1.0959 34 1 3.9955 0.8311 0.6661 35 1 3.4411 3.5482 0.1315 36 1 7.9733 3.9196 -0.1962 37 1 8.7287 6.2763 0.0073 38 1 3.9443 5.3156 0.3071 39 1 2.2719 2.1232 1.9978 40 1 0.6318 3.7616 4.3963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665822834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:24 Heat of formation + Delta-G solvation = -142.705678 kcal Electronic energy + Delta-G solvation = -27959.447161 eV Core-core repulsion = 23359.571462 eV Total energy + Delta-G solvation = -4599.875700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.40198 -47.95687 -47.81967 -40.95104 -39.17819 -36.83041 -34.07693 -33.11549 -32.65664 -32.26296 -29.84992 -28.43191 -26.90222 -24.28769 -24.07085 -23.25011 -22.36117 -20.65582 -20.04432 -19.05409 -18.78558 -18.70036 -18.01436 -17.15164 -16.88142 -15.56025 -15.48130 -15.36240 -15.00269 -14.86567 -14.64048 -14.51938 -14.30377 -14.18247 -14.00138 -13.98321 -13.92402 -13.57447 -13.39044 -13.26352 -13.05710 -12.73913 -12.31808 -12.23997 -11.54280 -11.03412 -10.92804 -10.83887 -10.55004 -10.38488 -10.36189 -10.27144 -10.09854 -9.80088 -9.78481 -9.60418 -9.02810 -8.87680 -7.12258 -5.88222 -3.18432 0.00526 0.75816 2.15689 2.56355 3.13480 3.26731 3.37000 3.42124 3.42546 3.44028 3.60278 4.11928 4.24155 4.37157 4.48740 4.52044 4.61661 4.70979 5.10947 5.27383 5.35402 5.44890 5.46772 5.64977 5.80933 5.86769 5.88104 5.97281 6.04114 6.33481 6.39597 6.48375 6.52847 6.69509 6.93240 7.18599 7.22417 7.60058 7.60889 8.19915 8.28845 9.40999 9.94065 10.29854 11.33262 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003211 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.391420 B = 8716.881382 C =10553.902191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.113 3.887 6 N -0.700 5.700 7 C 0.556 3.444 8 O -0.541 6.541 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.132 4.132 12 C 0.051 3.949 13 C 0.523 3.477 14 F -0.170 7.170 15 F -0.161 7.161 16 F -0.171 7.171 17 N -0.443 5.443 18 C 0.147 3.853 19 N -0.722 5.722 20 C -0.243 4.243 21 H 0.073 0.927 22 C -0.007 4.007 23 N -0.928 5.928 24 Si 0.903 3.097 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.285 1.285 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.411 0.589 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.180 0.820 39 H 0.385 0.615 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.208 4.704 -8.789 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.011 4.011 6 N -0.351 5.351 7 C 0.341 3.659 8 O -0.420 6.420 9 C -0.154 4.154 10 C -0.043 4.043 11 C -0.152 4.152 12 C -0.088 4.088 13 C 0.468 3.532 14 F -0.152 7.152 15 F -0.142 7.142 16 F -0.153 7.153 17 N -0.150 5.150 18 C -0.012 4.012 19 N -0.365 5.365 20 C -0.374 4.374 21 H 0.091 0.909 22 C -0.204 4.204 23 N -0.576 5.576 24 Si 0.734 3.266 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.249 0.751 36 H 0.179 0.821 37 H 0.173 0.827 38 H 0.196 0.804 39 H 0.219 0.781 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.965 4.846 -8.779 16.391 hybrid contribution -0.500 0.313 0.485 0.764 sum 12.465 5.160 -8.294 15.836 Atomic orbital electron populations 1.21772 0.95635 0.99705 1.03297 1.22067 0.97062 0.98238 1.00079 1.20581 0.89609 0.93045 0.91590 0.92666 1.21788 0.95961 0.81782 1.01536 1.45934 1.06520 1.11527 1.71097 1.17865 0.83020 0.87251 0.77742 1.90771 1.56058 1.45194 1.49939 1.21378 0.95427 0.95670 1.02879 1.21762 0.94995 0.96523 0.91053 1.21836 1.01329 0.92609 0.99453 1.21147 0.91843 0.93063 1.02741 1.17847 0.75020 0.85921 0.74429 1.93241 1.96209 1.85450 1.40262 1.93261 1.67932 1.80614 1.72391 1.93212 1.39905 1.96796 1.85337 1.67221 1.14179 1.23111 1.10523 1.23215 1.00997 0.85718 0.91316 1.42465 1.16873 1.65909 1.11236 1.19146 0.92017 1.28141 0.98076 0.90886 1.24728 0.98031 1.01353 0.96304 1.69637 1.35275 1.48671 1.03999 0.86346 0.84188 0.79236 0.76869 1.21250 1.21749 1.21188 0.94091 0.94841 0.89616 0.93803 0.92474 0.91357 0.91335 0.75111 0.82135 0.82739 0.80357 0.78099 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.18 37.16 0.34 -2.14 16 2 C -0.13 -2.14 5.61 -26.73 -0.15 -2.29 16 3 C 0.16 2.74 2.59 -67.94 -0.18 2.57 16 4 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 5 C 0.11 1.72 5.23 -4.04 -0.02 1.70 16 6 N -0.70 -10.30 5.34 -61.25 -0.33 -10.63 16 7 C 0.56 8.21 7.78 -12.33 -0.10 8.11 16 8 O -0.54 -9.26 16.42 5.32 0.09 -9.17 16 9 C -0.15 -1.88 5.89 -104.82 -0.62 -2.49 16 10 C -0.02 -0.18 9.72 -38.87 -0.38 -0.56 16 11 C -0.13 -1.26 9.42 -39.49 -0.37 -1.63 16 12 C 0.05 0.61 6.30 -82.51 -0.52 0.09 16 13 C 0.52 5.86 3.43 36.01 0.12 5.98 16 14 F -0.17 -1.90 17.30 2.25 0.04 -1.86 16 15 F -0.16 -2.07 17.03 2.25 0.04 -2.03 16 16 F -0.17 -1.70 16.43 2.25 0.04 -1.67 16 17 N -0.44 -6.04 9.94 -9.14 -0.09 -6.13 16 18 C 0.15 1.89 10.71 -17.14 -0.18 1.71 16 19 N -0.72 -15.39 4.51 -53.43 -0.24 -15.63 16 20 C -0.24 -5.87 7.75 -15.06 -0.12 -5.98 16 21 H 0.07 1.72 7.33 -52.48 -0.38 1.34 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.93 -25.85 13.06 55.49 0.72 -25.13 16 24 Si 0.90 20.95 29.55 -169.99 -5.02 15.93 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.73 5.99 -51.93 -0.31 1.42 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.41 6.04 6.20 -40.82 -0.25 5.78 16 36 H 0.16 1.46 7.74 -52.49 -0.41 1.06 16 37 H 0.15 1.00 7.59 -52.48 -0.40 0.61 16 38 H 0.18 2.18 6.42 -52.48 -0.34 1.84 16 39 H 0.38 9.03 7.80 -40.82 -0.32 8.71 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -28.65 354.32 -6.18 -34.83 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -4.50 Total: 11.38 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -2.26 Total: 4.77 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.07 Total: -57.52 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.11 Total: -5.56 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.65 -6.18 -34.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665822834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.878 kcal (2) G-P(sol) polarization free energy of solvation -28.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds