Wall clock time and date at job start Tue Mar 31 2020 16:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47169 * 2 1 4 4 H 1.08998 * 109.47049 * 304.99789 * 3 2 1 5 5 C 1.52997 * 109.47337 * 184.99426 * 3 2 1 6 6 N 1.46498 * 109.47611 * 184.99644 * 5 3 2 7 7 C 1.34776 * 120.00143 * 179.97438 * 6 5 3 8 8 O 1.21549 * 120.00201 * 0.02562 * 7 6 5 9 9 C 1.47846 * 119.99745 * 180.02562 * 7 6 5 10 10 C 1.40021 * 120.55367 * 179.97438 * 9 7 6 11 11 C 1.38361 * 118.28541 * 179.70393 * 10 9 7 12 12 C 1.38357 * 119.29972 * 0.27997 * 11 10 9 13 13 C 1.50700 * 119.45540 * 179.97438 * 12 11 10 14 14 F 1.39894 * 109.47532 * 89.99871 * 13 12 11 15 15 F 1.39900 * 109.47108 * 210.00057 * 13 12 11 16 16 F 1.39898 * 109.47411 * 329.99738 * 13 12 11 17 17 N 1.31916 * 121.08079 * 0.02562 * 12 11 10 18 18 C 1.31690 * 121.88251 * 359.97438 * 17 12 11 19 19 N 1.46500 * 109.47235 * 64.99535 * 3 2 1 20 20 C 1.36932 * 120.00379 * 274.99890 * 19 3 2 21 21 H 1.08006 * 119.99887 * 359.97438 * 20 19 3 22 22 C 1.38813 * 120.00550 * 179.97438 * 20 19 3 23 23 N 1.31619 * 119.99762 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00272 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47002 * 60.00074 * 24 22 20 26 26 H 1.48500 * 109.47128 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46900 * 300.00032 * 24 22 20 28 28 H 1.09002 * 109.46661 * 60.00723 * 1 2 3 29 29 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47183 * 299.99979 * 1 2 3 31 31 H 1.08996 * 109.47161 * 239.99056 * 2 1 3 32 32 H 1.09007 * 109.46510 * 119.99997 * 2 1 3 33 33 H 1.09006 * 109.46892 * 64.99603 * 5 3 2 34 34 H 1.09003 * 109.47622 * 305.00349 * 5 3 2 35 35 H 0.96998 * 119.99815 * 0.02562 * 6 5 3 36 36 H 1.08002 * 120.86196 * 359.97438 * 10 9 7 37 37 H 1.08003 * 120.34925 * 180.25565 * 11 10 9 38 38 H 1.08007 * 119.71871 * 180.02562 * 18 17 12 39 39 H 0.97005 * 120.00059 * 94.99986 * 19 3 2 40 40 H 0.96997 * 120.00359 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 6 3.5648 1.4443 -0.1256 6 7 4.0631 2.8167 -0.0059 7 6 5.3858 3.0628 -0.0857 8 8 6.1653 2.1461 -0.2574 9 6 5.8886 4.4479 0.0357 10 6 7.2604 4.7167 -0.0449 11 6 7.6788 6.0307 0.0687 12 6 6.7380 7.0265 0.2622 13 6 7.1898 8.4587 0.3870 14 9 7.2185 9.0508 -0.8802 15 9 6.2997 9.1586 1.2086 16 9 8.4706 8.4965 0.9484 17 7 5.4521 6.7426 0.3404 18 6 5.0048 5.5082 0.2383 19 7 1.6524 2.0975 1.2517 20 6 0.4157 2.6735 1.3687 21 1 -0.2739 2.6453 0.5379 22 6 0.0481 3.2937 2.5549 23 7 0.8886 3.3286 3.5672 24 14 -1.6393 4.0789 2.7146 25 1 -2.6870 3.0465 2.5100 26 1 -1.7840 4.6701 4.0692 27 1 -1.7881 5.1448 1.6914 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.8500 1.0376 -1.0959 34 1 3.9955 0.8311 0.6661 35 1 3.4411 3.5482 0.1315 36 1 7.9733 3.9196 -0.1962 37 1 8.7287 6.2763 0.0073 38 1 3.9443 5.3156 0.3071 39 1 2.2719 2.1232 1.9978 40 1 0.6318 3.7616 4.3963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665822834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:23 Heat of formation + Delta-G solvation = -160.752741 kcal Electronic energy + Delta-G solvation = -27960.229741 eV Core-core repulsion = 23359.571462 eV Total energy + Delta-G solvation = -4600.658279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.28778 -48.80804 -48.75168 -41.93719 -40.32678 -38.27500 -35.42289 -34.28069 -33.99921 -33.35437 -31.48231 -29.76420 -27.98427 -25.65145 -25.21000 -24.53819 -23.54987 -21.83754 -21.39456 -19.95682 -19.66383 -19.61819 -19.38964 -18.71946 -17.88382 -17.00279 -16.59848 -16.35348 -16.27287 -15.85402 -15.76771 -15.62082 -15.52340 -15.18383 -15.06126 -14.96221 -14.89880 -14.88926 -14.61131 -14.39761 -14.28819 -14.11132 -13.74804 -13.20764 -12.96302 -12.78522 -12.73131 -12.37318 -12.13448 -11.88660 -11.63451 -11.44546 -11.30267 -11.29590 -10.90706 -10.81541 -10.72743 -10.09324 -8.95927 -7.86423 -5.12916 -0.93643 -0.11261 1.26451 1.50515 1.52267 1.53230 1.58103 2.02778 2.35496 2.41227 2.61290 2.72328 3.23637 3.34829 3.43088 3.48451 3.60204 3.72649 3.76634 3.91776 3.96683 4.33520 4.40006 4.50572 4.54754 4.59396 4.74222 4.81353 4.89987 5.08953 5.12798 5.14130 5.23067 5.40647 5.58058 5.64058 5.74930 6.29305 6.33973 6.42121 7.01986 7.42772 8.14445 8.38596 9.35983 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003211 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.391420 B = 8716.881382 C =10553.902191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.163 3.837 4 H 0.061 0.939 5 C 0.121 3.879 6 N -0.701 5.701 7 C 0.560 3.440 8 O -0.565 6.565 9 C -0.158 4.158 10 C -0.009 4.009 11 C -0.114 4.114 12 C 0.040 3.960 13 C 0.528 3.472 14 F -0.170 7.170 15 F -0.173 7.173 16 F -0.161 7.161 17 N -0.470 5.470 18 C 0.141 3.859 19 N -0.728 5.728 20 C -0.216 4.216 21 H 0.080 0.920 22 C -0.068 4.068 23 N -0.966 5.966 24 Si 0.954 3.046 25 H -0.283 1.283 26 H -0.306 1.306 27 H -0.279 1.279 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.411 0.589 36 H 0.179 0.821 37 H 0.192 0.808 38 H 0.177 0.823 39 H 0.373 0.627 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.293 4.339 -10.527 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.054 3.946 4 H 0.079 0.921 5 C -0.003 4.003 6 N -0.351 5.351 7 C 0.346 3.654 8 O -0.446 6.446 9 C -0.163 4.163 10 C -0.036 4.036 11 C -0.134 4.134 12 C -0.099 4.099 13 C 0.472 3.528 14 F -0.151 7.151 15 F -0.155 7.155 16 F -0.142 7.142 17 N -0.178 5.178 18 C -0.018 4.018 19 N -0.369 5.369 20 C -0.348 4.348 21 H 0.098 0.902 22 C -0.261 4.261 23 N -0.617 5.617 24 Si 0.785 3.215 25 H -0.210 1.210 26 H -0.233 1.233 27 H -0.206 1.206 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.249 0.751 36 H 0.197 0.803 37 H 0.209 0.791 38 H 0.193 0.807 39 H 0.205 0.795 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.038 4.470 -10.575 18.135 hybrid contribution -0.773 0.382 0.922 1.262 sum 13.265 4.852 -9.653 17.108 Atomic orbital electron populations 1.21707 0.96153 1.00521 1.01778 1.21988 0.96487 0.97358 1.01173 1.20745 0.90922 0.93355 0.89563 0.92065 1.21686 0.94386 0.82042 1.02189 1.45936 1.06790 1.11346 1.71047 1.18080 0.82601 0.87842 0.76858 1.90753 1.56473 1.46121 1.51259 1.21241 0.96478 0.94267 1.04321 1.22027 0.94264 0.97474 0.89805 1.22169 1.02622 0.91402 0.97181 1.21398 0.91775 0.93808 1.02877 1.17770 0.75142 0.85567 0.74274 1.93243 1.96219 1.85435 1.40197 1.93236 1.68533 1.80895 1.72810 1.93231 1.39072 1.96734 1.85181 1.67168 1.15537 1.23433 1.11640 1.23150 1.01086 0.85778 0.91801 1.42582 1.15777 1.66093 1.12433 1.19442 0.92613 1.25357 0.97419 0.90178 1.25297 1.00598 1.03456 0.96705 1.69776 1.36733 1.50936 1.04258 0.85504 0.81490 0.78564 0.75956 1.20954 1.23299 1.20558 0.93167 0.93014 0.93360 0.90475 0.93546 0.89351 0.92395 0.75138 0.80341 0.79113 0.80660 0.79493 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.18 71.98 0.66 -3.93 16 2 C -0.13 -3.88 5.61 30.59 0.17 -3.70 16 3 C 0.16 5.27 2.59 44.99 0.12 5.38 16 4 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 5 C 0.12 3.50 5.23 86.38 0.45 3.95 16 6 N -0.70 -20.17 5.34 -465.97 -2.49 -22.66 16 7 C 0.56 16.03 7.78 86.79 0.68 16.70 16 8 O -0.57 -18.65 16.42 -3.87 -0.06 -18.72 16 9 C -0.16 -3.84 5.89 -19.99 -0.12 -3.96 16 10 C -0.01 -0.18 9.72 22.73 0.22 0.05 16 11 C -0.11 -1.87 9.42 22.33 0.21 -1.66 16 12 C 0.04 0.89 6.30 42.57 0.27 1.16 16 13 C 0.53 11.07 3.43 71.24 0.24 11.32 16 14 F -0.17 -3.54 17.30 44.97 0.78 -2.76 16 15 F -0.17 -4.37 17.03 44.97 0.77 -3.61 16 16 F -0.16 -2.85 16.43 44.97 0.74 -2.11 16 17 N -0.47 -12.62 9.94 -182.82 -1.82 -14.43 16 18 C 0.14 3.61 10.71 85.02 0.91 4.52 16 19 N -0.73 -30.89 4.51 -322.96 -1.46 -32.35 16 20 C -0.22 -10.40 7.75 84.03 0.65 -9.75 16 21 H 0.08 3.70 7.33 -2.91 -0.02 3.68 16 22 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16 23 N -0.97 -55.18 13.06 21.65 0.28 -54.90 16 24 Si 0.95 43.62 29.55 68.60 2.03 45.65 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 26 H -0.31 -14.62 7.11 99.48 0.71 -13.91 16 27 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.90 5.99 -2.39 -0.01 1.89 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.41 12.01 6.20 -92.71 -0.58 11.43 16 36 H 0.18 2.74 7.74 -2.91 -0.02 2.72 16 37 H 0.19 1.69 7.59 -2.91 -0.02 1.67 16 38 H 0.18 4.41 6.42 -2.91 -0.02 4.39 16 39 H 0.37 17.73 7.80 -92.70 -0.72 17.01 16 40 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -61.67 354.32 3.52 -58.15 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.18 Total: 30.77 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 4.93 Total: 16.97 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -5.48 Total: -124.34 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.06 Total: -18.72 kcal Atomic # 9 Polarization: -10.76 SS G_CDS: 2.28 Total: -8.48 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -61.67 3.52 -58.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665822834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.599 kcal (2) G-P(sol) polarization free energy of solvation -61.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds