Wall clock time and date at job start Tue Mar 31 2020 16:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21511 * 120.00427 * 0.02562 * 7 6 5 9 9 C 1.48173 * 119.99515 * 180.02562 * 7 6 5 10 10 C 1.39316 * 119.72079 * 180.02562 * 9 7 6 11 11 C 1.38588 * 119.05771 * 179.97438 * 10 9 7 12 12 C 1.50701 * 120.75173 * 179.97438 * 11 10 9 13 13 F 1.39892 * 109.47189 * 89.99960 * 12 11 10 14 14 F 1.39895 * 109.46859 * 210.00085 * 12 11 10 15 15 F 1.39905 * 109.47042 * 329.99417 * 12 11 10 16 16 C 1.38617 * 118.48925 * 359.97438 * 11 10 9 17 17 C 1.38561 * 119.35649 * 359.97438 * 16 11 10 18 18 N 1.31529 * 120.89726 * 359.74198 * 17 16 11 19 19 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 20 20 C 1.36943 * 119.99752 * 274.72222 * 19 3 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 3 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 3 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 90.00155 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00015 * 24 22 20 27 27 H 1.48496 * 109.47166 * 329.99846 * 24 22 20 28 28 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 30 30 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 34 34 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 35 35 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 36 36 H 1.08000 * 120.46608 * 359.97438 * 10 9 7 37 37 H 1.08008 * 120.32438 * 179.97438 * 16 11 10 38 38 H 1.07993 * 119.54804 * 179.97438 * 17 16 11 39 39 H 0.97001 * 120.00384 * 95.00578 * 19 3 2 40 40 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1650 2.1466 -0.2595 9 6 5.8897 4.4510 0.0347 10 6 7.2580 4.6990 -0.0503 11 6 7.7142 6.0026 0.0648 12 6 9.1861 6.3142 -0.0208 13 9 9.5333 6.5638 -1.3528 14 9 9.4694 7.4437 0.7545 15 9 9.9221 5.2244 0.4567 16 6 6.7858 7.0132 0.2604 17 6 5.4395 6.6938 0.3341 18 7 5.0333 5.4484 0.2160 19 7 1.6525 2.0974 1.2518 20 6 0.4178 2.6784 1.3668 21 1 -0.2719 2.6498 0.5362 22 6 0.0527 3.3040 2.5509 23 7 0.8936 3.3393 3.5630 24 14 -1.6317 4.0959 2.7081 25 1 -2.6015 3.0979 3.2266 26 1 -1.5534 5.2440 3.6467 27 1 -2.0795 4.5755 1.3759 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9955 0.8311 0.6660 34 1 3.8500 1.0376 -1.0960 35 1 3.4412 3.5482 0.1314 36 1 7.9532 3.8869 -0.2037 37 1 7.1086 8.0396 0.3544 38 1 4.7136 7.4787 0.4868 39 1 2.2720 2.1232 1.9978 40 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665867033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:59 Heat of formation + Delta-G solvation = -142.991021 kcal Electronic energy + Delta-G solvation = -27978.386987 eV Core-core repulsion = 23378.498914 eV Total energy + Delta-G solvation = -4599.888073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -50.53974 -48.04775 -48.00101 -40.88238 -38.99424 -36.72998 -34.17131 -33.46429 -32.37905 -31.82772 -29.76249 -28.04855 -27.11396 -24.97891 -23.53739 -23.24610 -22.38079 -20.58943 -20.04711 -18.91534 -18.87621 -18.83376 -17.41235 -17.00371 -16.46124 -16.32309 -15.49966 -15.36733 -15.03143 -14.89057 -14.79338 -14.62036 -14.42314 -14.19394 -14.14133 -14.11148 -13.83477 -13.74532 -13.21466 -13.02736 -12.69303 -12.61633 -12.45508 -12.16560 -11.47172 -10.97526 -10.90379 -10.76865 -10.63526 -10.46318 -10.34206 -10.21133 -10.03968 -9.74091 -9.61198 -9.54356 -8.96006 -8.71584 -7.03727 -5.81040 -3.10364 0.21602 0.52354 2.16198 2.60582 3.12840 3.28900 3.39649 3.45626 3.46892 3.56274 3.62760 3.98628 4.01120 4.38139 4.50368 4.54206 4.58364 5.02453 5.18901 5.31008 5.37767 5.42658 5.45370 5.54340 5.89939 5.93365 5.94395 6.04659 6.12504 6.40467 6.50695 6.55518 6.58463 6.79994 7.00048 7.23213 7.34643 7.66547 7.85144 8.35223 8.37745 9.47953 10.02342 10.38137 11.40802 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.002924 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.356603 B = 9573.953099 C =10912.512878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.055 0.945 5 C 0.111 3.889 6 N -0.684 5.684 7 C 0.564 3.436 8 O -0.543 6.543 9 C 0.095 3.905 10 C -0.070 4.070 11 C -0.149 4.149 12 C 0.514 3.486 13 F -0.172 7.172 14 F -0.172 7.172 15 F -0.170 7.170 16 C -0.107 4.107 17 C 0.109 3.891 18 N -0.423 5.423 19 N -0.721 5.721 20 C -0.237 4.237 21 H 0.073 0.927 22 C -0.010 4.010 23 N -0.929 5.929 24 Si 0.902 3.098 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.282 1.282 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.422 0.578 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.178 0.822 39 H 0.385 0.615 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.835 6.719 -8.689 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.073 0.927 5 C -0.013 4.013 6 N -0.335 5.335 7 C 0.347 3.653 8 O -0.421 6.421 9 C -0.044 4.044 10 C -0.091 4.091 11 C -0.158 4.158 12 C 0.460 3.540 13 F -0.153 7.153 14 F -0.154 7.154 15 F -0.151 7.151 16 C -0.128 4.128 17 C -0.050 4.050 18 N -0.134 5.134 19 N -0.363 5.363 20 C -0.368 4.368 21 H 0.091 0.909 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.734 3.266 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.261 0.739 36 H 0.179 0.821 37 H 0.171 0.829 38 H 0.195 0.805 39 H 0.219 0.781 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.318 5.914 -8.789 17.017 hybrid contribution 0.095 1.104 0.536 1.231 sum 13.413 7.019 -8.252 17.241 Atomic orbital electron populations 1.21767 0.95688 0.99647 1.03272 1.22070 0.97017 0.98289 1.00058 1.20565 0.89635 0.92954 0.91582 0.92724 1.21812 0.96020 0.82056 1.01439 1.45865 1.06659 1.11524 1.69455 1.17689 0.83330 0.86156 0.78093 1.90774 1.56355 1.44252 1.50747 1.21350 0.89738 0.94309 0.99035 1.21897 0.97004 0.96088 0.94141 1.20346 0.92271 0.96044 1.07150 1.18051 0.87279 0.74565 0.74144 1.93248 1.93304 1.94100 1.34645 1.93213 1.94610 1.52318 1.75227 1.93239 1.79309 1.54412 1.88153 1.22236 0.94201 1.00243 0.96072 1.22998 0.93711 0.93541 0.94788 1.67721 1.38782 1.00301 1.06616 1.42446 1.16973 1.65707 1.11190 1.19191 0.91978 1.27535 0.98094 0.90909 1.24718 0.97984 1.01467 0.96423 1.69665 1.35117 1.48818 1.04045 0.86267 0.84237 0.78815 0.77312 1.21819 1.21893 1.20763 0.94859 0.89658 0.94094 0.93805 0.92476 0.91385 0.91425 0.73881 0.82147 0.82876 0.80502 0.78082 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.18 37.16 0.34 -2.22 16 2 C -0.13 -2.25 5.61 -26.73 -0.15 -2.40 16 3 C 0.16 2.96 2.59 -67.93 -0.18 2.78 16 4 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 5 C 0.11 1.85 5.23 -4.04 -0.02 1.82 16 6 N -0.68 -11.64 5.38 -61.15 -0.33 -11.97 16 7 C 0.56 9.47 7.81 -12.18 -0.10 9.37 16 8 O -0.54 -10.08 16.32 5.36 0.09 -9.99 16 9 C 0.09 1.37 6.75 -83.01 -0.56 0.81 16 10 C -0.07 -0.87 9.01 -39.05 -0.35 -1.22 16 11 C -0.15 -1.54 5.47 -104.35 -0.57 -2.11 16 12 C 0.51 4.99 3.39 36.01 0.12 5.12 16 13 F -0.17 -1.70 17.30 2.25 0.04 -1.66 16 14 F -0.17 -1.60 16.55 2.25 0.04 -1.56 16 15 F -0.17 -1.80 16.55 2.25 0.04 -1.76 16 16 C -0.11 -0.94 9.49 -39.32 -0.37 -1.31 16 17 C 0.11 1.11 11.18 -17.56 -0.20 0.92 16 18 N -0.42 -5.87 9.54 -9.80 -0.09 -5.97 16 19 N -0.72 -16.28 4.50 -53.43 -0.24 -16.52 16 20 C -0.24 -5.96 7.76 -15.06 -0.12 -6.07 16 21 H 0.07 1.79 7.33 -52.49 -0.38 1.40 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -26.57 13.06 55.49 0.72 -25.84 16 24 Si 0.90 21.32 29.55 -169.99 -5.02 16.29 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.77 6.01 -51.93 -0.31 1.46 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 35 H 0.42 7.59 7.47 -40.82 -0.30 7.29 16 36 H 0.16 1.92 7.28 -52.49 -0.38 1.53 16 37 H 0.15 0.87 7.69 -52.48 -0.40 0.47 16 38 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.39 9.58 7.80 -40.82 -0.32 9.26 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -29.30 355.94 -6.26 -35.56 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -4.62 Total: 12.91 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.24 Total: 5.15 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.06 Total: -60.30 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.11 Total: -4.99 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.30 -6.26 -35.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665867033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.427 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds