Wall clock time and date at job start Tue Mar 31 2020 16:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21511 * 120.00427 * 0.02562 * 7 6 5 9 9 C 1.48173 * 119.99515 * 180.02562 * 7 6 5 10 10 C 1.39316 * 119.72079 * 180.02562 * 9 7 6 11 11 C 1.38588 * 119.05771 * 179.97438 * 10 9 7 12 12 C 1.50701 * 120.75173 * 179.97438 * 11 10 9 13 13 F 1.39892 * 109.47189 * 89.99960 * 12 11 10 14 14 F 1.39895 * 109.46859 * 210.00085 * 12 11 10 15 15 F 1.39905 * 109.47042 * 329.99417 * 12 11 10 16 16 C 1.38617 * 118.48925 * 359.97438 * 11 10 9 17 17 C 1.38561 * 119.35649 * 359.97438 * 16 11 10 18 18 N 1.31529 * 120.89726 * 359.74198 * 17 16 11 19 19 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 20 20 C 1.36943 * 119.99752 * 274.72222 * 19 3 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 3 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 3 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 90.00155 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00015 * 24 22 20 27 27 H 1.48496 * 109.47166 * 329.99846 * 24 22 20 28 28 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 30 30 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 34 34 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 35 35 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 36 36 H 1.08000 * 120.46608 * 359.97438 * 10 9 7 37 37 H 1.08008 * 120.32438 * 179.97438 * 16 11 10 38 38 H 1.07993 * 119.54804 * 179.97438 * 17 16 11 39 39 H 0.97001 * 120.00384 * 95.00578 * 19 3 2 40 40 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1650 2.1466 -0.2595 9 6 5.8897 4.4510 0.0347 10 6 7.2580 4.6990 -0.0503 11 6 7.7142 6.0026 0.0648 12 6 9.1861 6.3142 -0.0208 13 9 9.5333 6.5638 -1.3528 14 9 9.4694 7.4437 0.7545 15 9 9.9221 5.2244 0.4567 16 6 6.7858 7.0132 0.2604 17 6 5.4395 6.6938 0.3341 18 7 5.0333 5.4484 0.2160 19 7 1.6525 2.0974 1.2518 20 6 0.4178 2.6784 1.3668 21 1 -0.2719 2.6498 0.5362 22 6 0.0527 3.3040 2.5509 23 7 0.8936 3.3393 3.5630 24 14 -1.6317 4.0959 2.7081 25 1 -2.6015 3.0979 3.2266 26 1 -1.5534 5.2440 3.6467 27 1 -2.0795 4.5755 1.3759 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9955 0.8311 0.6660 34 1 3.8500 1.0376 -1.0960 35 1 3.4412 3.5482 0.1314 36 1 7.9532 3.8869 -0.2037 37 1 7.1086 8.0396 0.3544 38 1 4.7136 7.4787 0.4868 39 1 2.2720 2.1232 1.9978 40 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665867033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:58 Heat of formation + Delta-G solvation = -161.895399 kcal Electronic energy + Delta-G solvation = -27979.206742 eV Core-core repulsion = 23378.498914 eV Total energy + Delta-G solvation = -4600.707829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.32176 -48.82718 -48.78407 -41.88016 -40.22845 -38.26691 -35.44654 -34.65012 -34.05347 -32.77611 -31.47452 -29.55026 -27.94939 -26.25673 -25.17692 -24.17270 -23.69130 -21.79909 -21.46711 -19.99841 -19.66098 -19.64721 -19.13394 -18.15169 -17.57246 -17.14888 -16.99320 -16.57624 -16.39604 -15.81533 -15.77873 -15.62641 -15.53804 -15.26271 -15.16825 -14.93697 -14.92372 -14.86485 -14.76143 -14.53875 -14.11974 -13.74106 -13.50490 -13.29406 -12.96550 -12.78087 -12.76710 -12.34820 -12.08163 -11.88433 -11.62803 -11.53766 -11.50803 -11.30479 -10.90315 -10.78184 -10.53875 -10.05468 -8.94812 -7.84308 -5.11478 -0.69615 -0.35228 1.34966 1.50450 1.52004 1.53308 1.60333 2.01678 2.45685 2.53186 2.62411 2.80537 2.99206 3.22121 3.49668 3.57144 3.62857 3.70139 3.90194 3.96021 4.14321 4.30723 4.39409 4.47465 4.49411 4.57710 4.62140 4.73940 4.88585 5.10667 5.13904 5.22296 5.24409 5.41858 5.57353 5.63805 5.74663 6.32624 6.35435 6.61894 7.04869 7.43402 8.14642 8.39559 9.38684 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.002924 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.356603 B = 9573.953099 C =10912.512878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.164 3.836 4 H 0.058 0.942 5 C 0.118 3.882 6 N -0.688 5.688 7 C 0.562 3.438 8 O -0.569 6.569 9 C 0.068 3.932 10 C -0.072 4.072 11 C -0.152 4.152 12 C 0.522 3.478 13 F -0.171 7.171 14 F -0.166 7.166 15 F -0.176 7.176 16 C -0.081 4.081 17 C 0.107 3.893 18 N -0.452 5.452 19 N -0.728 5.728 20 C -0.216 4.216 21 H 0.080 0.920 22 C -0.071 4.071 23 N -0.968 5.968 24 Si 0.959 3.041 25 H -0.295 1.295 26 H -0.302 1.302 27 H -0.269 1.269 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.418 0.582 36 H 0.157 0.843 37 H 0.193 0.807 38 H 0.209 0.791 39 H 0.372 0.628 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.012 7.926 -10.091 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.056 3.944 4 H 0.076 0.924 5 C -0.007 4.007 6 N -0.338 5.338 7 C 0.347 3.653 8 O -0.449 6.449 9 C -0.069 4.069 10 C -0.093 4.093 11 C -0.161 4.161 12 C 0.467 3.533 13 F -0.153 7.153 14 F -0.147 7.147 15 F -0.158 7.158 16 C -0.101 4.101 17 C -0.053 4.053 18 N -0.163 5.163 19 N -0.368 5.368 20 C -0.348 4.348 21 H 0.098 0.902 22 C -0.263 4.263 23 N -0.619 5.619 24 Si 0.790 3.210 25 H -0.223 1.223 26 H -0.229 1.229 27 H -0.194 1.194 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.255 0.745 36 H 0.175 0.825 37 H 0.210 0.790 38 H 0.225 0.775 39 H 0.203 0.797 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.491 7.089 -10.252 18.367 hybrid contribution 0.101 0.762 0.888 1.175 sum 13.592 7.851 -9.363 18.277 Atomic orbital electron populations 1.21698 0.95953 1.00606 1.01797 1.21985 0.96662 0.97113 1.01181 1.20720 0.90672 0.93490 0.89543 0.92371 1.21741 0.94725 0.82129 1.02058 1.45873 1.06875 1.11317 1.69726 1.18070 0.82879 0.87241 0.77137 1.90740 1.56732 1.45436 1.51975 1.20971 0.90550 0.93362 1.02062 1.21850 0.96113 0.97135 0.94251 1.20450 0.93003 0.95610 1.07069 1.17876 0.86729 0.74515 0.74141 1.93253 1.93261 1.94077 1.34668 1.93228 1.94533 1.51894 1.75065 1.93231 1.79428 1.54868 1.88245 1.22672 0.93155 1.01608 0.92637 1.23603 0.95188 0.92845 0.93689 1.67648 1.39501 1.01564 1.07610 1.42568 1.15986 1.65989 1.12279 1.19492 0.92497 1.25162 0.97604 0.90225 1.25354 1.00902 1.03398 0.96671 1.69816 1.36786 1.50899 1.04387 0.85347 0.80851 0.77446 0.77369 1.22318 1.22918 1.19363 0.92816 0.93323 0.93167 0.90466 0.93503 0.92457 0.89465 0.74465 0.82518 0.78966 0.77451 0.79653 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.18 71.98 0.66 -4.10 16 2 C -0.13 -4.13 5.61 30.60 0.17 -3.95 16 3 C 0.16 5.84 2.59 44.99 0.12 5.96 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.12 3.87 5.23 86.38 0.45 4.33 16 6 N -0.69 -23.73 5.38 -465.66 -2.50 -26.23 16 7 C 0.56 19.27 7.81 86.88 0.68 19.95 16 8 O -0.57 -21.59 16.32 -3.75 -0.06 -21.65 16 9 C 0.07 1.97 6.75 41.91 0.28 2.26 16 10 C -0.07 -1.77 9.01 22.61 0.20 -1.57 16 11 C -0.15 -2.87 5.47 -19.69 -0.11 -2.98 16 12 C 0.52 9.13 3.39 71.24 0.24 9.38 16 13 F -0.17 -3.07 17.30 44.97 0.78 -2.29 16 14 F -0.17 -2.63 16.55 44.97 0.74 -1.89 16 15 F -0.18 -3.55 16.55 44.97 0.74 -2.81 16 16 C -0.08 -1.17 9.49 22.44 0.21 -0.95 16 17 C 0.11 1.94 11.18 84.82 0.95 2.89 16 18 N -0.45 -12.28 9.54 -184.91 -1.76 -14.05 16 19 N -0.73 -33.09 4.50 -322.94 -1.45 -34.55 16 20 C -0.22 -10.83 7.76 84.03 0.65 -10.18 16 21 H 0.08 3.84 7.33 -2.91 -0.02 3.82 16 22 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 23 N -0.97 -56.70 13.06 21.65 0.28 -56.42 16 24 Si 0.96 44.21 29.55 68.60 2.03 46.23 16 25 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.97 6.01 -2.39 -0.01 1.96 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 35 H 0.42 15.27 7.47 -92.71 -0.69 14.57 16 36 H 0.16 3.83 7.28 -2.91 -0.02 3.81 16 37 H 0.19 1.26 7.69 -2.91 -0.02 1.24 16 38 H 0.21 2.34 8.06 -2.91 -0.02 2.31 16 39 H 0.37 18.94 7.80 -92.71 -0.72 18.22 16 40 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -64.35 355.94 3.47 -60.88 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -0.30 Total: 35.10 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 4.98 Total: 17.66 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -5.44 Total: -131.24 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.06 Total: -21.65 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 2.27 Total: -6.98 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -64.35 3.47 -60.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665867033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.011 kcal (2) G-P(sol) polarization free energy of solvation -64.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds