Wall clock time and date at job start Tue Mar 31 2020 16:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47204 * 358.88653 * 3 2 1 5 5 C 1.52996 * 109.47096 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47220 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00210 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00244 * 180.02562 * 6 5 4 9 9 N 1.40100 * 120.00294 * 180.02562 * 8 6 5 10 10 C 1.34773 * 119.99924 * 180.02562 * 9 8 6 11 11 O 1.21591 * 119.99798 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00213 * 359.97438 * 10 9 8 13 13 C 1.40030 * 119.99970 * 175.46894 * 12 10 9 14 14 C 1.38907 * 120.00113 * 215.13209 * 13 12 10 15 15 C 1.38008 * 119.99786 * 180.02562 * 14 13 12 16 16 C 1.38906 * 120.00261 * 0.02562 * 15 14 13 17 17 O 1.35780 * 120.00097 * 179.97438 * 16 15 14 18 18 C 1.34816 * 116.99765 * 5.35984 * 17 16 15 19 19 H 1.07994 * 120.00154 * 354.96152 * 18 17 16 20 20 C 1.38631 * 119.99589 * 174.95813 * 18 17 16 21 21 N 1.31579 * 119.99663 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00240 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47384 * 89.99944 * 22 20 18 24 24 H 1.48507 * 109.47037 * 209.99853 * 22 20 18 25 25 H 1.48501 * 109.47251 * 329.99367 * 22 20 18 26 26 C 1.38906 * 120.00055 * 0.23943 * 16 15 14 27 27 C 1.38013 * 119.99843 * 359.48485 * 26 16 15 28 28 H 4.44651 * 5.63288 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.46783 * 238.88773 * 3 2 1 30 30 H 1.08996 * 109.47095 * 118.89309 * 3 2 1 31 31 H 1.09006 * 109.47029 * 59.99910 * 4 3 2 32 32 H 1.08996 * 109.47631 * 300.00329 * 4 3 2 33 33 H 1.09000 * 109.46680 * 60.00250 * 5 4 3 34 34 H 1.08996 * 109.47306 * 300.00720 * 5 4 3 35 35 H 0.97003 * 119.99703 * 0.02562 * 8 6 5 36 36 H 0.96998 * 119.99498 * 359.97438 * 9 8 6 37 37 H 0.96997 * 119.99874 * 355.47290 * 12 10 9 38 38 H 1.07999 * 120.00066 * 0.02562 * 14 13 12 39 39 H 1.08000 * 119.99984 * 180.02562 * 15 14 13 40 40 H 0.97002 * 120.00125 * 180.02562 * 21 20 18 41 41 H 1.07994 * 119.99876 * 179.72345 * 26 16 15 42 42 H 1.08004 * 119.99864 * 180.25649 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1568 -1.4413 0.0280 5 6 4.6867 -1.4406 0.0274 6 6 5.1897 -2.8609 0.0544 7 8 4.4021 -3.7830 0.0719 8 7 6.5149 -3.1066 0.0590 9 7 6.9826 -4.4270 0.0836 10 6 8.3077 -4.6725 0.0888 11 8 8.7136 -5.8185 0.1096 12 7 9.1831 -3.6479 0.0698 13 6 10.5570 -3.8988 0.1710 14 6 11.3771 -3.0093 0.8535 15 6 12.7313 -3.2564 0.9526 16 6 13.2742 -4.3943 0.3696 17 8 14.6066 -4.6371 0.4667 18 6 15.3276 -3.7957 1.2347 19 1 14.8577 -2.9275 1.6726 20 6 16.6722 -4.0451 1.4623 21 7 17.3760 -3.2237 2.2114 22 14 17.4850 -5.5465 0.7044 23 1 18.0317 -5.1926 -0.6302 24 1 18.5881 -6.0094 1.5843 25 1 16.4815 -6.6311 0.5565 26 6 12.4550 -5.2809 -0.3176 27 6 11.0999 -5.0368 -0.4120 28 1 -1.0497 -0.0004 -0.0002 29 1 3.0091 0.5318 0.8799 30 1 3.0092 0.4973 -0.8997 31 1 2.7936 -1.9725 -0.8518 32 1 2.7937 -1.9380 0.9277 33 1 5.0501 -0.9093 0.9070 34 1 5.0495 -0.9441 -0.8725 35 1 7.1449 -2.3691 0.0454 36 1 6.3526 -5.1644 0.0976 37 1 8.8613 -2.7367 -0.0138 38 1 10.9550 -2.1244 1.3064 39 1 13.3688 -2.5651 1.4836 40 1 18.3169 -3.3980 2.3704 41 1 12.8779 -6.1633 -0.7747 42 1 10.4623 -5.7284 -0.9427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672749247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:24 Heat of formation + Delta-G solvation = 27.648791 kcal Electronic energy + Delta-G solvation = -25879.800055 eV Core-core repulsion = 21829.168220 eV Total energy + Delta-G solvation = -4050.631835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.01770 -39.95448 -38.94643 -36.92149 -36.33713 -35.80970 -34.04370 -32.96452 -32.35810 -31.32598 -30.36712 -28.39664 -27.91035 -25.29519 -23.38373 -22.55678 -22.38990 -21.19215 -20.58010 -19.41190 -18.73188 -18.05408 -17.85444 -17.40886 -16.77059 -16.65471 -15.95230 -15.71713 -15.26520 -14.92839 -14.84672 -14.69781 -14.21532 -13.91074 -13.85203 -13.77966 -13.22655 -13.19504 -12.86667 -12.44296 -12.33232 -12.17982 -11.93632 -11.87068 -11.57787 -11.55028 -11.02148 -10.86656 -10.73427 -10.62333 -10.54792 -10.25091 -10.22409 -9.81332 -9.37486 -8.85426 -8.70197 -8.35495 -7.13504 -6.45068 -4.11168 1.44475 1.92979 2.02802 2.10107 2.37766 2.41315 2.80151 3.01524 3.22400 3.24626 3.40117 3.79226 3.91029 4.21872 4.40110 4.40428 4.43874 4.57837 4.83305 4.83577 4.88984 4.97822 5.07010 5.08177 5.39902 5.55361 5.58560 5.62077 5.73360 5.90501 5.96969 6.03138 6.03652 6.34763 6.61485 6.69277 6.89098 6.95053 7.03700 7.17024 7.19147 7.39869 7.52649 7.73690 7.90461 7.98978 8.31596 8.90183 9.52072 10.62301 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.030586 B = 0.001688 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.226039 B =16583.830430 C =17360.603777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.189 4.189 3 C -0.013 4.013 4 C -0.100 4.100 5 C -0.132 4.132 6 C 0.514 3.486 7 O -0.532 6.532 8 N -0.531 5.531 9 N -0.535 5.535 10 C 0.709 3.291 11 O -0.554 6.554 12 N -0.671 5.671 13 C 0.054 3.946 14 C -0.090 4.090 15 C -0.206 4.206 16 C 0.154 3.846 17 O -0.215 6.215 18 C -0.390 4.390 19 H 0.107 0.893 20 C 0.064 3.936 21 N -0.879 5.879 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.177 4.177 27 C -0.068 4.068 28 H 0.216 0.784 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.420 0.580 36 H 0.442 0.558 37 H 0.393 0.607 38 H 0.113 0.887 39 H 0.139 0.861 40 H 0.280 0.720 41 H 0.122 0.878 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.587 8.777 -5.066 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.189 4.189 3 C -0.050 4.050 4 C -0.139 4.139 5 C -0.173 4.173 6 C 0.301 3.699 7 O -0.407 6.407 8 N -0.283 5.283 9 N -0.293 5.293 10 C 0.409 3.591 11 O -0.426 6.426 12 N -0.320 5.320 13 C -0.039 4.039 14 C -0.110 4.110 15 C -0.226 4.226 16 C 0.101 3.899 17 O -0.120 6.120 18 C -0.465 4.465 19 H 0.124 0.876 20 C -0.139 4.139 21 N -0.516 5.516 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.197 4.197 27 C -0.088 4.088 28 H 0.233 0.767 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.262 0.738 36 H 0.288 0.712 37 H 0.228 0.772 38 H 0.131 0.869 39 H 0.156 0.844 40 H 0.090 0.910 41 H 0.140 0.860 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.342 7.204 -5.021 27.767 hybrid contribution 0.148 0.210 -0.114 0.281 sum -26.194 7.414 -5.134 27.703 Atomic orbital electron populations 1.24953 0.96070 1.00377 1.01066 1.23043 0.94551 1.00770 1.00525 1.18743 0.85008 0.97581 1.03634 1.21301 0.92176 0.95618 1.04763 1.21643 0.97878 0.92191 1.05606 1.20988 0.80076 0.92625 0.76247 1.90771 1.54509 1.46208 1.49176 1.45031 1.07432 0.98518 1.77271 1.44690 1.05227 0.97650 1.81738 1.15751 0.79359 0.85474 0.78557 1.91047 1.74357 1.19742 1.57498 1.42282 1.05090 1.07875 1.76783 1.17064 0.80236 1.00067 1.06530 1.20483 0.93380 0.99033 0.98134 1.21078 0.94724 1.00038 1.06750 1.19169 0.84052 0.92841 0.93844 1.83589 1.14608 1.51952 1.61835 1.20757 0.92405 1.05803 1.27578 0.87590 1.24464 0.95271 0.98460 0.95746 1.69652 1.09053 1.36777 1.36149 0.86182 0.79075 0.82669 0.79032 1.19861 1.20798 1.18252 1.20154 0.92210 1.00948 1.06363 1.20770 0.93783 0.96416 0.97855 0.76683 0.89256 0.89271 0.90449 0.90431 0.87737 0.87760 0.73845 0.71152 0.77215 0.86874 0.84388 0.91020 0.86016 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.33 19.25 29.55 0.57 -0.76 16 2 C -0.19 -1.28 13.35 -37.12 -0.50 -1.77 16 3 C -0.01 -0.05 5.70 -29.52 -0.17 -0.22 16 4 C -0.10 -0.48 4.46 -26.73 -0.12 -0.60 16 5 C -0.13 -0.38 5.70 -27.89 -0.16 -0.54 16 6 C 0.51 3.61 7.95 -10.99 -0.09 3.52 16 7 O -0.53 -6.03 15.82 5.56 0.09 -5.95 16 8 N -0.53 -3.47 6.26 31.22 0.20 -3.28 16 9 N -0.54 -5.47 6.26 27.63 0.17 -5.30 16 10 C 0.71 9.44 8.52 -86.92 -0.74 8.69 16 11 O -0.55 -9.74 14.61 5.29 0.08 -9.66 16 12 N -0.67 -7.97 5.30 -14.18 -0.08 -8.04 16 13 C 0.05 0.86 6.30 -83.61 -0.53 0.33 16 14 C -0.09 -1.46 9.96 -39.42 -0.39 -1.86 16 15 C -0.21 -4.16 9.16 -39.42 -0.36 -4.52 16 16 C 0.15 3.44 6.65 -39.09 -0.26 3.18 16 17 O -0.22 -5.55 8.58 0.00 0.00 -5.55 16 18 C -0.39 -10.69 9.94 30.88 0.31 -10.39 16 19 H 0.11 2.93 5.43 -52.49 -0.28 2.65 16 20 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 21 N -0.88 -24.86 13.96 55.48 0.77 -24.09 16 22 Si 0.90 21.40 28.62 -169.99 -4.86 16.54 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 26 C -0.18 -3.53 9.99 -39.42 -0.39 -3.93 16 27 C -0.07 -1.23 8.69 -39.41 -0.34 -1.57 16 28 H 0.22 0.71 7.80 -54.11 -0.42 0.29 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.49 8.10 -51.93 -0.42 0.06 16 32 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 34 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 35 H 0.42 1.41 6.71 -182.59 -1.23 0.18 16 36 H 0.44 4.80 8.10 -182.60 -1.48 3.32 16 37 H 0.39 2.97 6.76 -40.82 -0.28 2.70 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.14 2.90 5.63 -52.49 -0.30 2.60 16 40 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 42 H 0.13 2.36 6.22 -52.48 -0.33 2.04 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -35.46 371.68 -8.12 -43.58 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.82 Total: 4.90 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -3.27 Total: -8.75 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 1.07 Total: -40.71 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.17 Total: -21.16 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.86 Total: 16.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.46 -8.12 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672749247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.227 kcal (2) G-P(sol) polarization free energy of solvation -35.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds