Wall clock time and date at job start Tue Mar 31 2020 16:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47204 * 358.88653 * 3 2 1 5 5 C 1.52996 * 109.47096 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47220 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00210 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00244 * 180.02562 * 6 5 4 9 9 N 1.40100 * 120.00294 * 180.02562 * 8 6 5 10 10 C 1.34773 * 119.99924 * 180.02562 * 9 8 6 11 11 O 1.21591 * 119.99798 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00213 * 359.97438 * 10 9 8 13 13 C 1.40030 * 119.99970 * 175.46894 * 12 10 9 14 14 C 1.38907 * 120.00113 * 215.13209 * 13 12 10 15 15 C 1.38008 * 119.99786 * 180.02562 * 14 13 12 16 16 C 1.38906 * 120.00261 * 0.02562 * 15 14 13 17 17 O 1.35780 * 120.00097 * 179.97438 * 16 15 14 18 18 C 1.34816 * 116.99765 * 5.35984 * 17 16 15 19 19 H 1.07994 * 120.00154 * 354.96152 * 18 17 16 20 20 C 1.38631 * 119.99589 * 174.95813 * 18 17 16 21 21 N 1.31579 * 119.99663 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00240 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47384 * 89.99944 * 22 20 18 24 24 H 1.48507 * 109.47037 * 209.99853 * 22 20 18 25 25 H 1.48501 * 109.47251 * 329.99367 * 22 20 18 26 26 C 1.38906 * 120.00055 * 0.23943 * 16 15 14 27 27 C 1.38013 * 119.99843 * 359.48485 * 26 16 15 28 28 H 4.44651 * 5.63288 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.46783 * 238.88773 * 3 2 1 30 30 H 1.08996 * 109.47095 * 118.89309 * 3 2 1 31 31 H 1.09006 * 109.47029 * 59.99910 * 4 3 2 32 32 H 1.08996 * 109.47631 * 300.00329 * 4 3 2 33 33 H 1.09000 * 109.46680 * 60.00250 * 5 4 3 34 34 H 1.08996 * 109.47306 * 300.00720 * 5 4 3 35 35 H 0.97003 * 119.99703 * 0.02562 * 8 6 5 36 36 H 0.96998 * 119.99498 * 359.97438 * 9 8 6 37 37 H 0.96997 * 119.99874 * 355.47290 * 12 10 9 38 38 H 1.07999 * 120.00066 * 0.02562 * 14 13 12 39 39 H 1.08000 * 119.99984 * 180.02562 * 15 14 13 40 40 H 0.97002 * 120.00125 * 180.02562 * 21 20 18 41 41 H 1.07994 * 119.99876 * 179.72345 * 26 16 15 42 42 H 1.08004 * 119.99864 * 180.25649 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1568 -1.4413 0.0280 5 6 4.6867 -1.4406 0.0274 6 6 5.1897 -2.8609 0.0544 7 8 4.4021 -3.7830 0.0719 8 7 6.5149 -3.1066 0.0590 9 7 6.9826 -4.4270 0.0836 10 6 8.3077 -4.6725 0.0888 11 8 8.7136 -5.8185 0.1096 12 7 9.1831 -3.6479 0.0698 13 6 10.5570 -3.8988 0.1710 14 6 11.3771 -3.0093 0.8535 15 6 12.7313 -3.2564 0.9526 16 6 13.2742 -4.3943 0.3696 17 8 14.6066 -4.6371 0.4667 18 6 15.3276 -3.7957 1.2347 19 1 14.8577 -2.9275 1.6726 20 6 16.6722 -4.0451 1.4623 21 7 17.3760 -3.2237 2.2114 22 14 17.4850 -5.5465 0.7044 23 1 18.0317 -5.1926 -0.6302 24 1 18.5881 -6.0094 1.5843 25 1 16.4815 -6.6311 0.5565 26 6 12.4550 -5.2809 -0.3176 27 6 11.0999 -5.0368 -0.4120 28 1 -1.0497 -0.0004 -0.0002 29 1 3.0091 0.5318 0.8799 30 1 3.0092 0.4973 -0.8997 31 1 2.7936 -1.9725 -0.8518 32 1 2.7937 -1.9380 0.9277 33 1 5.0501 -0.9093 0.9070 34 1 5.0495 -0.9441 -0.8725 35 1 7.1449 -2.3691 0.0454 36 1 6.3526 -5.1644 0.0976 37 1 8.8613 -2.7367 -0.0138 38 1 10.9550 -2.1244 1.3064 39 1 13.3688 -2.5651 1.4836 40 1 18.3169 -3.3980 2.3704 41 1 12.8779 -6.1633 -0.7747 42 1 10.4623 -5.7284 -0.9427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672749247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:23 Heat of formation + Delta-G solvation = 2.383642 kcal Electronic energy + Delta-G solvation = -25880.895635 eV Core-core repulsion = 21829.168220 eV Total energy + Delta-G solvation = -4051.727415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.01548 -40.94223 -40.37991 -38.38849 -37.08510 -36.38224 -35.35753 -34.31862 -33.43275 -32.06756 -31.88132 -29.63175 -28.55079 -27.15619 -24.06415 -23.84479 -23.66361 -21.91130 -21.77118 -20.41645 -19.65055 -19.24687 -19.10900 -18.71728 -17.78814 -17.18167 -16.93599 -16.65001 -16.48737 -16.27236 -15.71762 -15.65061 -15.48226 -15.42045 -15.20986 -14.61961 -14.45305 -14.16532 -14.09565 -13.62808 -13.51603 -13.44488 -13.31302 -12.77930 -12.59550 -12.49671 -12.45119 -12.00055 -11.89649 -11.72483 -11.47116 -11.25095 -11.08868 -11.00631 -10.92303 -10.68778 -9.85092 -9.54772 -8.66495 -8.47010 -6.17684 0.48419 0.52486 0.75909 1.34312 1.36660 1.42272 1.53816 1.79162 1.92541 1.94955 1.96113 2.30478 2.78552 3.05183 3.20013 3.31696 3.57012 3.88494 4.05766 4.13602 4.14345 4.18693 4.48637 4.51098 4.55724 4.70235 4.73097 4.75207 4.87041 5.03220 5.14690 5.23322 5.24814 5.27450 5.30974 5.39006 5.48094 5.54510 5.65175 5.80525 5.91631 6.19529 6.27191 6.57236 6.75746 6.88119 7.15375 7.31849 7.62857 8.64008 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.030586 B = 0.001688 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.226039 B =16583.830430 C =17360.603777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.213 4.213 3 C -0.012 4.012 4 C -0.098 4.098 5 C -0.121 4.121 6 C 0.513 3.487 7 O -0.580 6.580 8 N -0.518 5.518 9 N -0.530 5.530 10 C 0.711 3.289 11 O -0.600 6.600 12 N -0.655 5.655 13 C 0.084 3.916 14 C -0.077 4.077 15 C -0.213 4.213 16 C 0.115 3.885 17 O -0.246 6.246 18 C -0.396 4.396 19 H 0.090 0.910 20 C 0.013 3.987 21 N -0.921 5.921 22 Si 0.964 3.036 23 H -0.266 1.266 24 H -0.270 1.270 25 H -0.266 1.266 26 C -0.178 4.178 27 C -0.076 4.076 28 H 0.234 0.766 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.438 0.562 36 H 0.441 0.559 37 H 0.419 0.581 38 H 0.161 0.839 39 H 0.124 0.876 40 H 0.284 0.716 41 H 0.125 0.875 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.677 10.444 -5.701 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.213 4.213 3 C -0.048 4.048 4 C -0.136 4.136 5 C -0.161 4.161 6 C 0.302 3.698 7 O -0.457 6.457 8 N -0.272 5.272 9 N -0.284 5.284 10 C 0.410 3.590 11 O -0.475 6.475 12 N -0.306 5.306 13 C -0.010 4.010 14 C -0.097 4.097 15 C -0.233 4.233 16 C 0.065 3.935 17 O -0.153 6.153 18 C -0.472 4.472 19 H 0.107 0.893 20 C -0.186 4.186 21 N -0.561 5.561 22 Si 0.787 3.213 23 H -0.191 1.191 24 H -0.195 1.195 25 H -0.191 1.191 26 C -0.197 4.197 27 C -0.096 4.096 28 H 0.251 0.749 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.283 0.717 36 H 0.287 0.713 37 H 0.259 0.741 38 H 0.178 0.822 39 H 0.142 0.858 40 H 0.093 0.907 41 H 0.143 0.857 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -28.506 8.945 -5.674 30.410 hybrid contribution 0.297 -0.247 0.029 0.388 sum -28.209 8.698 -5.645 30.054 Atomic orbital electron populations 1.25699 0.97226 1.00363 1.01272 1.23930 0.96006 1.00866 1.00535 1.18891 0.83329 0.97025 1.05530 1.21209 0.93788 0.95908 1.02684 1.21741 0.96039 0.89408 1.08915 1.21888 0.79446 0.93857 0.74573 1.90769 1.55693 1.48022 1.51246 1.45141 1.07932 0.97053 1.77089 1.44445 1.04091 0.99704 1.80171 1.15743 0.80139 0.84846 0.78229 1.91030 1.75569 1.21641 1.59261 1.41977 1.03168 1.09181 1.76314 1.17116 0.82037 0.98371 1.03450 1.20787 0.91554 1.00353 0.97023 1.21152 0.96454 0.99139 1.06509 1.19627 0.83418 0.94615 0.95829 1.83537 1.16207 1.52389 1.63201 1.20748 0.92944 1.05746 1.27800 0.89288 1.25180 0.95838 1.01080 0.96458 1.69724 1.09574 1.38619 1.38222 0.85310 0.78093 0.79239 0.78698 1.19060 1.19455 1.19094 1.20306 0.92881 1.00735 1.05825 1.20929 0.92942 0.97475 0.98228 0.74894 0.87278 0.87210 0.92597 0.92672 0.84316 0.84218 0.71716 0.71339 0.74134 0.82151 0.85805 0.90670 0.85698 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.76 19.25 74.32 1.43 -1.33 16 2 C -0.21 -2.62 13.35 31.13 0.42 -2.21 16 3 C -0.01 -0.06 5.70 28.79 0.16 0.11 16 4 C -0.10 -0.73 4.46 30.59 0.14 -0.59 16 5 C -0.12 -0.16 5.70 29.85 0.17 0.01 16 6 C 0.51 5.61 7.95 87.66 0.70 6.31 16 7 O -0.58 -12.41 15.82 -3.03 -0.05 -12.46 16 8 N -0.52 -4.72 6.26 -173.53 -1.09 -5.81 16 9 N -0.53 -9.37 6.26 -184.75 -1.16 -10.53 16 10 C 0.71 16.85 8.52 179.06 1.53 18.38 16 11 O -0.60 -20.07 14.61 -4.00 -0.06 -20.13 16 12 N -0.65 -12.77 5.30 -317.04 -1.68 -14.45 16 13 C 0.08 2.42 6.30 38.15 0.24 2.66 16 14 C -0.08 -2.25 9.96 22.38 0.22 -2.03 16 15 C -0.21 -8.47 9.16 22.38 0.20 -8.27 16 16 C 0.11 5.21 6.65 22.59 0.15 5.36 16 17 O -0.25 -13.10 8.58 -22.93 -0.20 -13.30 16 18 C -0.40 -22.57 9.94 67.91 0.68 -21.90 16 19 H 0.09 5.18 5.43 -2.91 -0.02 5.16 16 20 C 0.01 0.74 5.49 84.82 0.47 1.21 16 21 N -0.92 -53.69 13.96 21.61 0.30 -53.39 16 22 Si 0.96 45.10 28.62 68.60 1.96 47.07 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 26 C -0.18 -7.06 9.99 22.38 0.22 -6.84 16 27 C -0.08 -2.60 8.69 22.38 0.19 -2.41 16 28 H 0.23 1.39 7.80 -4.43 -0.03 1.35 16 29 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.06 0.65 8.10 -2.38 -0.02 0.63 16 32 H 0.05 0.65 8.10 -2.39 -0.02 0.63 16 33 H 0.14 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H 0.14 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H 0.44 0.55 6.71 -213.32 -1.43 -0.88 16 36 H 0.44 8.85 8.10 -213.32 -1.73 7.12 16 37 H 0.42 3.96 6.76 -92.71 -0.63 3.34 16 38 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.12 5.30 5.63 -2.91 -0.02 5.29 16 40 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 42 H 0.14 4.68 6.22 -2.91 -0.02 4.67 16 Total: -1.00 -82.62 371.68 2.27 -80.35 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -2.68 Total: 14.17 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 6.92 Total: -11.54 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -3.62 Total: -84.17 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -0.30 Total: -45.88 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.96 Total: 47.07 kcal Total: -82.62 2.27 -80.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672749247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.735 kcal (2) G-P(sol) polarization free energy of solvation -82.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds