Wall clock time and date at job start Tue Mar 31 2020 16:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46985 * 2 1 4 4 H 1.09001 * 109.46898 * 55.00725 * 3 2 1 5 5 C 1.53005 * 109.46715 * 175.00096 * 3 2 1 6 6 N 1.46505 * 109.46901 * 175.00555 * 5 3 2 7 7 C 1.34777 * 119.99722 * 180.02562 * 6 5 3 8 8 O 1.21513 * 120.00316 * 359.97438 * 7 6 5 9 9 C 1.48176 * 119.99591 * 179.71962 * 7 6 5 10 10 C 1.39305 * 119.71777 * 179.97438 * 9 7 6 11 11 C 1.38598 * 119.05544 * 179.77306 * 10 9 7 12 12 C 1.38626 * 118.48693 * 0.49708 * 11 10 9 13 13 C 1.38564 * 119.35087 * 359.74888 * 12 11 10 14 14 C 1.50700 * 119.54796 * 180.02562 * 13 12 11 15 15 F 1.39898 * 109.47195 * 184.97651 * 14 13 12 16 16 F 1.39904 * 109.47065 * 304.97966 * 14 13 12 17 17 F 1.39902 * 109.47164 * 64.97399 * 14 13 12 18 18 N 1.31524 * 120.90625 * 359.97438 * 13 12 11 19 19 N 1.46500 * 109.47415 * 295.00122 * 3 2 1 20 20 C 1.36935 * 119.99823 * 85.00116 * 19 3 2 21 21 H 1.08002 * 120.00075 * 0.02562 * 20 19 3 22 22 C 1.38813 * 119.99657 * 180.02562 * 20 19 3 23 23 N 1.31616 * 119.99710 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00182 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47156 * 90.00141 * 24 22 20 26 26 H 1.48500 * 109.47149 * 210.00112 * 24 22 20 27 27 H 1.48510 * 109.47272 * 330.00151 * 24 22 20 28 28 H 1.09003 * 109.46863 * 300.00226 * 1 2 3 29 29 H 1.09001 * 109.47222 * 59.99591 * 1 2 3 30 30 H 1.08996 * 109.47572 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47032 * 240.00492 * 2 1 3 32 32 H 1.08994 * 109.46999 * 120.00082 * 2 1 3 33 33 H 1.08995 * 109.47418 * 55.00423 * 5 3 2 34 34 H 1.09001 * 109.47199 * 294.99964 * 5 3 2 35 35 H 0.97000 * 119.99795 * 359.97438 * 6 5 3 36 36 H 1.07996 * 120.47810 * 0.02562 * 10 9 7 37 37 H 1.07993 * 120.75472 * 180.22295 * 11 10 9 38 38 H 1.07993 * 120.32561 * 179.77368 * 12 11 10 39 39 H 0.97004 * 119.99789 * 265.00083 * 19 3 2 40 40 H 0.96999 * 119.99821 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 7 4.0631 2.8168 0.0061 7 6 5.3858 3.0629 0.0859 8 8 6.1651 2.1465 0.2576 9 6 5.8902 4.4503 -0.0413 10 6 7.2585 4.6981 0.0427 11 6 7.7156 6.0005 -0.0829 12 6 6.7871 7.0113 -0.2778 13 6 5.4404 6.6925 -0.3461 14 6 4.4272 7.7877 -0.5584 15 9 3.1375 7.2514 -0.4804 16 9 4.5856 8.7671 0.4280 17 9 4.6182 8.3615 -1.8200 18 7 5.0342 5.4470 -0.2292 19 7 1.6524 2.0976 -1.2518 20 6 0.4156 2.6736 -1.3687 21 1 -0.2740 2.6453 -0.5379 22 6 0.0482 3.2938 -2.5550 23 7 -1.1404 3.8479 -2.6672 24 14 1.2412 3.3433 -3.9915 25 1 1.0384 2.1449 -4.8449 26 1 0.9991 4.5691 -4.7940 27 1 2.6345 3.3550 -3.4778 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9954 0.8312 -0.6659 34 1 3.8499 1.0377 1.0960 35 1 3.4411 3.5483 -0.1314 36 1 7.9535 3.8866 0.1994 37 1 8.7708 6.2233 -0.0258 38 1 7.1103 8.0371 -0.3758 39 1 2.2719 2.1233 -1.9978 40 1 -1.3970 4.2816 -3.4960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714114938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:08 Heat of formation + Delta-G solvation = -135.833298 kcal Electronic energy + Delta-G solvation = -28823.960176 eV Core-core repulsion = 24224.382485 eV Total energy + Delta-G solvation = -4599.577691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.23098 -47.80752 -47.61043 -41.01694 -39.14380 -36.89796 -34.08353 -33.14123 -32.63675 -32.23977 -30.24563 -28.32008 -26.92890 -25.23902 -23.45472 -22.84482 -22.31124 -20.70383 -20.15673 -18.92245 -18.65306 -18.57211 -17.78136 -17.29191 -16.57155 -16.27674 -15.68514 -15.48675 -15.07707 -14.66308 -14.47575 -14.41892 -14.14749 -14.08771 -13.91790 -13.81702 -13.75980 -13.69684 -13.20290 -13.04322 -12.87512 -12.79726 -12.45220 -12.29806 -11.58116 -11.15707 -10.95716 -10.74903 -10.54636 -10.51289 -10.40251 -10.30320 -10.00472 -9.86089 -9.83289 -9.45975 -8.95536 -8.86284 -7.31440 -5.77448 -3.13373 0.10046 0.53159 2.22710 2.43940 3.08241 3.37678 3.38410 3.40562 3.41277 3.46774 3.65483 4.19116 4.23149 4.38347 4.49353 4.50926 4.59098 4.84010 4.93692 5.18567 5.26360 5.39942 5.47341 5.52049 5.75320 5.86803 5.88799 5.90597 6.00935 6.26722 6.43254 6.51100 6.57915 6.70373 6.93458 7.05354 7.30776 7.69489 7.97207 8.22223 8.40545 9.18034 9.90738 10.09149 11.40244 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.010406 B = 0.004726 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.143089 B = 5922.796828 C = 7635.374117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.064 0.936 5 C 0.108 3.892 6 N -0.690 5.690 7 C 0.566 3.434 8 O -0.541 6.541 9 C 0.092 3.908 10 C -0.085 4.085 11 C -0.078 4.078 12 C -0.105 4.105 13 C 0.039 3.961 14 C 0.520 3.480 15 F -0.150 7.150 16 F -0.173 7.173 17 F -0.171 7.171 18 N -0.411 5.411 19 N -0.746 5.746 20 C -0.241 4.241 21 H 0.095 0.905 22 C 0.010 3.990 23 N -0.930 5.930 24 Si 0.878 3.122 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.278 1.278 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.422 0.578 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.361 0.639 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.312 5.483 6.919 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.016 4.016 6 N -0.341 5.341 7 C 0.349 3.651 8 O -0.419 6.419 9 C -0.048 4.048 10 C -0.105 4.105 11 C -0.104 4.104 12 C -0.126 4.126 13 C -0.102 4.102 14 C 0.465 3.535 15 F -0.131 7.131 16 F -0.154 7.154 17 F -0.152 7.152 18 N -0.122 5.122 19 N -0.389 5.389 20 C -0.371 4.371 21 H 0.113 0.887 22 C -0.186 4.186 23 N -0.577 5.577 24 Si 0.709 3.291 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.261 0.739 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.194 0.806 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.638 4.725 7.031 19.567 hybrid contribution 1.138 0.862 -1.286 1.921 sum 18.776 5.586 5.745 20.415 Atomic orbital electron populations 1.21781 0.95140 0.99699 1.03862 1.22033 0.97432 0.97686 1.00098 1.20557 0.89517 0.93157 0.90988 0.91817 1.21871 0.95997 0.81941 1.01783 1.45960 1.06849 1.11627 1.69644 1.17700 0.83262 0.86155 0.77992 1.90774 1.56326 1.44031 1.50748 1.21336 0.90618 0.93173 0.99720 1.22390 0.95863 0.98430 0.93863 1.21658 1.00925 0.91587 0.96238 1.22031 0.92129 1.02072 0.96319 1.20978 0.92420 0.92125 1.04719 1.17839 0.80875 0.80519 0.74270 1.93338 1.38558 1.85522 1.95702 1.93224 1.95578 1.64361 1.62244 1.93242 1.95125 1.85696 1.41157 1.67123 1.39341 0.98783 1.06920 1.42818 1.16887 1.67641 1.11601 1.19026 0.90441 1.27793 0.99808 0.88705 1.24623 0.96285 1.00200 0.97500 1.69682 1.19294 1.42020 1.26689 0.86656 0.81290 0.77242 0.83946 1.21279 1.21820 1.20403 0.93860 0.89285 0.94861 0.92629 0.93529 0.91413 0.90948 0.73909 0.82217 0.82629 0.83014 0.80552 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.18 37.16 0.34 -2.30 16 2 C -0.13 -2.16 5.61 -26.73 -0.15 -2.31 16 3 C 0.17 2.99 2.59 -67.93 -0.18 2.81 16 4 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 5 C 0.11 1.72 5.23 -4.04 -0.02 1.70 16 6 N -0.69 -11.47 5.38 -61.14 -0.33 -11.80 16 7 C 0.57 9.01 7.81 -12.18 -0.10 8.91 16 8 O -0.54 -9.32 16.32 5.35 0.09 -9.23 16 9 C 0.09 1.26 6.75 -83.01 -0.56 0.70 16 10 C -0.08 -0.85 9.63 -39.05 -0.38 -1.23 16 11 C -0.08 -0.57 10.17 -39.31 -0.40 -0.97 16 12 C -0.11 -0.90 9.61 -39.32 -0.38 -1.28 16 13 C 0.04 0.49 6.26 -82.60 -0.52 -0.02 16 14 C 0.52 6.85 3.31 36.01 0.12 6.97 16 15 F -0.15 -2.48 16.85 2.25 0.04 -2.44 16 16 F -0.17 -2.02 17.16 2.25 0.04 -1.98 16 17 F -0.17 -2.22 17.28 2.25 0.04 -2.18 16 18 N -0.41 -6.08 8.91 -6.06 -0.05 -6.13 16 19 N -0.75 -16.35 4.31 -53.42 -0.23 -16.58 16 20 C -0.24 -6.33 8.23 -15.06 -0.12 -6.45 16 21 H 0.10 2.67 7.56 -52.49 -0.40 2.27 16 22 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 23 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 24 Si 0.88 22.04 27.73 -169.99 -4.71 17.32 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.93 5.99 -51.93 -0.31 1.61 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.42 7.60 7.47 -40.82 -0.30 7.29 16 36 H 0.16 1.38 7.64 -52.49 -0.40 0.98 16 37 H 0.16 0.53 8.06 -52.49 -0.42 0.10 16 38 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.36 8.11 5.66 -40.82 -0.23 7.88 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 354.23 15.07 5.34 5.34 Total: -1.00 -31.73 354.23 -6.06 -37.79 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -4.61 Total: 10.86 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -2.43 Total: 6.72 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.16 Total: -62.19 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.12 Total: -6.61 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.73 -6.06 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714114938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.041 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds