Wall clock time and date at job start Tue Mar 31 2020 16:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46985 * 2 1 4 4 H 1.09001 * 109.46898 * 55.00725 * 3 2 1 5 5 C 1.53005 * 109.46715 * 175.00096 * 3 2 1 6 6 N 1.46505 * 109.46901 * 175.00555 * 5 3 2 7 7 C 1.34777 * 119.99722 * 180.02562 * 6 5 3 8 8 O 1.21513 * 120.00316 * 359.97438 * 7 6 5 9 9 C 1.48176 * 119.99591 * 179.71962 * 7 6 5 10 10 C 1.39305 * 119.71777 * 179.97438 * 9 7 6 11 11 C 1.38598 * 119.05544 * 179.77306 * 10 9 7 12 12 C 1.38626 * 118.48693 * 0.49708 * 11 10 9 13 13 C 1.38564 * 119.35087 * 359.74888 * 12 11 10 14 14 C 1.50700 * 119.54796 * 180.02562 * 13 12 11 15 15 F 1.39898 * 109.47195 * 184.97651 * 14 13 12 16 16 F 1.39904 * 109.47065 * 304.97966 * 14 13 12 17 17 F 1.39902 * 109.47164 * 64.97399 * 14 13 12 18 18 N 1.31524 * 120.90625 * 359.97438 * 13 12 11 19 19 N 1.46500 * 109.47415 * 295.00122 * 3 2 1 20 20 C 1.36935 * 119.99823 * 85.00116 * 19 3 2 21 21 H 1.08002 * 120.00075 * 0.02562 * 20 19 3 22 22 C 1.38813 * 119.99657 * 180.02562 * 20 19 3 23 23 N 1.31616 * 119.99710 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00182 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47156 * 90.00141 * 24 22 20 26 26 H 1.48500 * 109.47149 * 210.00112 * 24 22 20 27 27 H 1.48510 * 109.47272 * 330.00151 * 24 22 20 28 28 H 1.09003 * 109.46863 * 300.00226 * 1 2 3 29 29 H 1.09001 * 109.47222 * 59.99591 * 1 2 3 30 30 H 1.08996 * 109.47572 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47032 * 240.00492 * 2 1 3 32 32 H 1.08994 * 109.46999 * 120.00082 * 2 1 3 33 33 H 1.08995 * 109.47418 * 55.00423 * 5 3 2 34 34 H 1.09001 * 109.47199 * 294.99964 * 5 3 2 35 35 H 0.97000 * 119.99795 * 359.97438 * 6 5 3 36 36 H 1.07996 * 120.47810 * 0.02562 * 10 9 7 37 37 H 1.07993 * 120.75472 * 180.22295 * 11 10 9 38 38 H 1.07993 * 120.32561 * 179.77368 * 12 11 10 39 39 H 0.97004 * 119.99789 * 265.00083 * 19 3 2 40 40 H 0.96999 * 119.99821 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 7 4.0631 2.8168 0.0061 7 6 5.3858 3.0629 0.0859 8 8 6.1651 2.1465 0.2576 9 6 5.8902 4.4503 -0.0413 10 6 7.2585 4.6981 0.0427 11 6 7.7156 6.0005 -0.0829 12 6 6.7871 7.0113 -0.2778 13 6 5.4404 6.6925 -0.3461 14 6 4.4272 7.7877 -0.5584 15 9 3.1375 7.2514 -0.4804 16 9 4.5856 8.7671 0.4280 17 9 4.6182 8.3615 -1.8200 18 7 5.0342 5.4470 -0.2292 19 7 1.6524 2.0976 -1.2518 20 6 0.4156 2.6736 -1.3687 21 1 -0.2740 2.6453 -0.5379 22 6 0.0482 3.2938 -2.5550 23 7 -1.1404 3.8479 -2.6672 24 14 1.2412 3.3433 -3.9915 25 1 1.0384 2.1449 -4.8449 26 1 0.9991 4.5691 -4.7940 27 1 2.6345 3.3550 -3.4778 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9954 0.8312 -0.6659 34 1 3.8499 1.0377 1.0960 35 1 3.4411 3.5483 -0.1314 36 1 7.9535 3.8866 0.1994 37 1 8.7708 6.2233 -0.0258 38 1 7.1103 8.0371 -0.3758 39 1 2.2719 2.1233 -1.9978 40 1 -1.3970 4.2816 -3.4960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714114938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:07 Heat of formation + Delta-G solvation = -157.970232 kcal Electronic energy + Delta-G solvation = -28824.920106 eV Core-core repulsion = 24224.382485 eV Total energy + Delta-G solvation = -4600.537621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.26655 -48.79388 -48.73826 -41.93224 -40.29758 -38.42473 -35.44683 -34.30529 -33.89141 -33.42364 -32.08465 -29.76066 -27.87370 -26.34501 -25.05271 -23.99878 -23.56212 -21.89071 -21.63791 -20.11386 -19.66854 -19.62836 -19.41837 -18.53377 -17.38263 -17.25928 -17.13836 -16.61528 -16.42977 -15.99293 -15.71702 -15.51442 -15.48046 -15.17680 -14.96587 -14.89284 -14.87609 -14.81718 -14.70251 -14.51637 -14.37958 -14.01472 -13.85520 -13.13557 -13.12409 -12.92526 -12.89820 -12.34689 -12.16063 -11.92542 -11.63177 -11.60101 -11.41428 -11.26738 -10.99443 -10.84236 -10.69970 -10.12833 -9.30059 -7.96910 -5.27955 -0.71135 -0.23876 1.28093 1.35275 1.36760 1.42788 1.45754 1.99091 2.38300 2.43654 2.49328 2.72351 3.22020 3.25090 3.36050 3.56476 3.65319 3.71356 3.80175 3.85354 4.07100 4.22260 4.30595 4.43496 4.55159 4.66677 4.77977 4.80849 4.83554 5.05957 5.10184 5.18981 5.23341 5.36196 5.51753 5.73723 5.85854 6.13351 6.25959 6.46461 6.97764 7.11988 7.86824 8.04338 9.24372 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.010406 B = 0.004726 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.143089 B = 5922.796828 C = 7635.374117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.166 3.834 4 H 0.056 0.944 5 C 0.116 3.884 6 N -0.701 5.701 7 C 0.565 3.435 8 O -0.558 6.558 9 C 0.061 3.939 10 C -0.077 4.077 11 C -0.055 4.055 12 C -0.088 4.088 13 C 0.016 3.984 14 C 0.519 3.481 15 F -0.178 7.178 16 F -0.165 7.165 17 F -0.171 7.171 18 N -0.449 5.449 19 N -0.746 5.746 20 C -0.202 4.202 21 H 0.069 0.931 22 C -0.058 4.058 23 N -0.981 5.981 24 Si 0.938 3.062 25 H -0.283 1.283 26 H -0.304 1.304 27 H -0.261 1.261 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.414 0.586 36 H 0.175 0.825 37 H 0.208 0.792 38 H 0.188 0.812 39 H 0.361 0.639 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.278 5.277 7.610 24.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.058 3.942 4 H 0.074 0.926 5 C -0.008 4.008 6 N -0.350 5.350 7 C 0.350 3.650 8 O -0.438 6.438 9 C -0.078 4.078 10 C -0.098 4.098 11 C -0.080 4.080 12 C -0.108 4.108 13 C -0.125 4.125 14 C 0.463 3.537 15 F -0.159 7.159 16 F -0.146 7.146 17 F -0.153 7.153 18 N -0.161 5.161 19 N -0.390 5.390 20 C -0.333 4.333 21 H 0.087 0.913 22 C -0.250 4.250 23 N -0.632 5.632 24 Si 0.768 3.232 25 H -0.210 1.210 26 H -0.232 1.232 27 H -0.187 1.187 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.251 0.749 36 H 0.192 0.808 37 H 0.225 0.775 38 H 0.206 0.794 39 H 0.194 0.806 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 21.660 4.477 7.758 23.439 hybrid contribution -0.045 0.940 -1.353 1.648 sum 21.615 5.417 6.405 23.186 Atomic orbital electron populations 1.21695 0.96448 1.00480 1.01526 1.21940 0.96066 0.96525 1.01997 1.20740 0.91226 0.93667 0.88611 0.92615 1.21798 0.93945 0.82066 1.02960 1.46040 1.07316 1.11415 1.70277 1.18052 0.82650 0.87259 0.77011 1.90745 1.56447 1.44935 1.51635 1.21148 0.92123 0.91796 1.02774 1.22663 0.94233 1.00368 0.92505 1.22232 1.03000 0.89593 0.93208 1.22493 0.90298 1.04308 0.93664 1.21035 0.93762 0.91062 1.06658 1.18051 0.80135 0.81120 0.74362 1.93274 1.40764 1.86042 1.95866 1.93231 1.95428 1.64082 1.61849 1.93232 1.95014 1.85766 1.41274 1.66894 1.40877 0.99942 1.08376 1.42811 1.15248 1.67701 1.13234 1.18948 0.91085 1.25058 0.98209 0.91276 1.25245 0.97838 1.01578 1.00305 1.69839 1.21556 1.44690 1.27158 0.85665 0.80169 0.76481 0.80931 1.20998 1.23164 1.18653 0.94065 0.93636 0.92577 0.92342 0.89890 0.91246 0.88875 0.74924 0.80774 0.77461 0.79443 0.80562 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.18 71.98 0.66 -4.41 16 2 C -0.13 -3.86 5.61 30.60 0.17 -3.69 16 3 C 0.17 5.77 2.59 44.99 0.12 5.89 16 4 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 5 C 0.12 3.51 5.23 86.38 0.45 3.97 16 6 N -0.70 -22.99 5.38 -465.64 -2.50 -25.50 16 7 C 0.57 17.52 7.81 86.88 0.68 18.20 16 8 O -0.56 -18.43 16.32 -3.76 -0.06 -18.49 16 9 C 0.06 1.60 6.75 41.91 0.28 1.89 16 10 C -0.08 -1.30 9.63 22.61 0.22 -1.08 16 11 C -0.06 -0.53 10.17 22.45 0.23 -0.30 16 12 C -0.09 -1.17 9.61 22.44 0.22 -0.95 16 13 C 0.02 0.39 6.26 42.68 0.27 0.66 16 14 C 0.52 13.47 3.31 71.24 0.24 13.71 16 15 F -0.18 -6.12 16.85 44.97 0.76 -5.37 16 16 F -0.16 -3.70 17.16 44.97 0.77 -2.93 16 17 F -0.17 -4.34 17.28 44.97 0.78 -3.57 16 18 N -0.45 -13.12 8.91 -173.08 -1.54 -14.67 16 19 N -0.75 -32.78 4.31 -322.92 -1.39 -34.18 16 20 C -0.20 -10.90 8.23 84.03 0.69 -10.20 16 21 H 0.07 4.06 7.56 -2.91 -0.02 4.04 16 22 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 23 N -0.98 -62.67 13.97 21.65 0.30 -62.37 16 24 Si 0.94 46.72 27.73 68.60 1.90 48.62 16 25 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.30 -15.69 7.11 99.48 0.71 -14.99 16 27 H -0.26 -12.10 6.52 99.48 0.65 -11.45 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.99 5.99 -2.39 -0.01 1.98 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.41 15.12 7.47 -92.71 -0.69 14.43 16 36 H 0.17 2.39 7.64 -2.91 -0.02 2.37 16 37 H 0.21 -0.11 8.06 -2.91 -0.02 -0.13 16 38 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.36 16.01 5.66 -92.71 -0.52 15.49 16 40 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -73.25 354.23 3.53 -69.72 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.17 Total: 27.97 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 4.69 Total: 20.73 kcal Atomic # 7 Polarization: -131.57 SS G_CDS: -5.14 Total: -136.71 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.06 Total: -18.49 kcal Atomic # 9 Polarization: -14.16 SS G_CDS: 2.31 Total: -11.86 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.90 Total: 48.62 kcal Total: -73.25 3.53 -69.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714114938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.248 kcal (2) G-P(sol) polarization free energy of solvation -73.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds