Wall clock time and date at job start Tue Mar 31 2020 16:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21518 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.48151 * 120.00155 * 179.97438 * 7 6 5 10 10 C 1.39835 * 120.92282 * 359.72755 * 9 7 6 11 11 C 1.38123 * 119.00446 * 179.75463 * 10 9 7 12 12 N 1.31830 * 120.89488 * 0.52892 * 11 10 9 13 13 C 1.31801 * 122.04797 * 359.73416 * 12 11 10 14 14 C 1.50705 * 119.55017 * 180.02562 * 13 12 11 15 15 F 1.39899 * 109.46758 * 269.98427 * 14 13 12 16 16 F 1.39903 * 109.46972 * 29.98425 * 14 13 12 17 17 F 1.39897 * 109.46694 * 149.98416 * 14 13 12 18 18 C 1.38171 * 120.89394 * 359.97438 * 13 12 11 19 19 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 20 20 C 1.36941 * 119.99583 * 85.00384 * 19 3 2 21 21 H 1.07999 * 120.00378 * 359.97438 * 20 19 3 22 22 C 1.38814 * 119.99657 * 179.97438 * 20 19 3 23 23 N 1.31616 * 120.00233 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99719 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47101 * 89.99948 * 24 22 20 26 26 H 1.48499 * 109.46824 * 209.99835 * 24 22 20 27 27 H 1.48496 * 109.46857 * 329.99662 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 34 34 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 35 35 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 36 36 H 1.08003 * 120.49644 * 359.97438 * 10 9 7 37 37 H 1.08000 * 119.55443 * 180.27043 * 11 10 9 38 38 H 1.08005 * 120.49525 * 179.97438 * 18 13 12 39 39 H 0.96999 * 120.00274 * 264.99733 * 19 3 2 40 40 H 0.97001 * 119.99757 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1649 2.1467 0.2587 9 6 5.8895 4.4510 -0.0350 10 6 5.0107 5.5192 -0.2398 11 6 5.5230 6.7977 -0.3425 12 7 6.8206 7.0156 -0.2604 13 6 7.6836 6.0372 -0.0733 14 6 9.1552 6.3504 0.0126 15 9 9.7195 6.2933 -1.2663 16 9 9.3287 7.6337 0.5421 17 9 9.7834 5.4149 0.8417 18 6 7.2572 4.7283 0.0463 19 7 1.6525 2.0974 -1.2519 20 6 0.4156 2.6734 -1.3689 21 1 -0.2743 2.6446 -0.5385 22 6 0.0486 3.2944 -2.5549 23 7 0.8896 3.3300 -3.5668 24 14 -1.6383 4.0807 -2.7143 25 1 -1.5656 5.5000 -2.2834 26 1 -2.0832 4.0153 -4.1296 27 1 -2.6071 3.3520 -1.8567 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8499 1.0378 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4409 3.5484 -0.1309 36 1 3.9469 5.3474 -0.3129 37 1 4.8519 7.6298 -0.4963 38 1 7.9701 3.9315 0.1991 39 1 2.2720 2.1231 -1.9978 40 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714116937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:37 Heat of formation + Delta-G solvation = -143.062798 kcal Electronic energy + Delta-G solvation = -27996.556684 eV Core-core repulsion = 23396.665498 eV Total energy + Delta-G solvation = -4599.891186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.36718 -47.90646 -47.81037 -40.94165 -39.22545 -36.86273 -34.15750 -33.13961 -32.47654 -32.35260 -29.87773 -28.19307 -26.93873 -25.08194 -23.61212 -23.29297 -22.45619 -20.68661 -20.15290 -18.93064 -18.74097 -18.66691 -17.52028 -17.18043 -16.63591 -15.97521 -15.55558 -15.52958 -14.99992 -14.82670 -14.66519 -14.59298 -14.27084 -14.21148 -14.00391 -13.97486 -13.96547 -13.86847 -13.39157 -13.14822 -12.95774 -12.76402 -12.30078 -12.04137 -11.57583 -11.08507 -10.97242 -10.87237 -10.56868 -10.43516 -10.30752 -10.29267 -10.14188 -9.86257 -9.79105 -9.65033 -9.08121 -8.91376 -7.16905 -5.93275 -3.23502 0.23820 0.48531 2.19241 2.64229 3.05332 3.26929 3.30971 3.38201 3.38719 3.39912 3.72113 4.15677 4.27112 4.38487 4.43862 4.53861 4.59814 4.78547 5.22928 5.24542 5.31414 5.38378 5.42640 5.60376 5.77435 5.83984 5.85045 5.99799 6.02772 6.30229 6.36797 6.45119 6.50367 6.66462 6.90286 7.15448 7.23582 7.55629 7.57761 8.17069 8.23768 9.35940 9.89298 10.25270 11.28185 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.002920 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.245101 B = 9587.531295 C =10932.496367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.113 3.887 6 N -0.698 5.698 7 C 0.553 3.447 8 O -0.537 6.537 9 C -0.079 4.079 10 C -0.102 4.102 11 C 0.106 3.894 12 N -0.432 5.432 13 C 0.026 3.974 14 C 0.527 3.473 15 F -0.170 7.170 16 F -0.164 7.164 17 F -0.170 7.170 18 C -0.069 4.069 19 N -0.723 5.723 20 C -0.242 4.242 21 H 0.074 0.926 22 C -0.008 4.008 23 N -0.928 5.928 24 Si 0.902 3.098 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.033 0.967 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.411 0.589 36 H 0.159 0.841 37 H 0.179 0.821 38 H 0.160 0.840 39 H 0.385 0.615 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.930 4.210 8.727 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.011 4.011 6 N -0.349 5.349 7 C 0.338 3.662 8 O -0.415 6.415 9 C -0.090 4.090 10 C -0.122 4.122 11 C -0.052 4.052 12 N -0.141 5.141 13 C -0.112 4.112 14 C 0.471 3.529 15 F -0.151 7.151 16 F -0.145 7.145 17 F -0.151 7.151 18 C -0.090 4.090 19 N -0.365 5.365 20 C -0.372 4.372 21 H 0.092 0.908 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.733 3.267 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 H 0.052 0.948 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.249 0.751 36 H 0.176 0.824 37 H 0.196 0.804 38 H 0.178 0.822 39 H 0.219 0.781 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.634 4.455 8.787 15.245 hybrid contribution -1.250 -0.034 -0.531 1.358 sum 10.384 4.421 8.256 13.983 Atomic orbital electron populations 1.21769 0.95612 0.99735 1.03275 1.22066 0.97066 0.98207 1.00131 1.20583 0.89581 0.93070 0.91548 0.92679 1.21800 0.95957 0.81754 1.01599 1.45888 1.06434 1.11517 1.71108 1.17952 0.83096 0.87235 0.77913 1.90778 1.56059 1.45093 1.49542 1.20463 0.93591 0.94817 1.00139 1.22807 1.02263 0.93105 0.94037 1.22851 0.90120 0.96790 0.95435 1.67052 1.04056 1.34921 1.08096 1.20826 0.93275 0.91125 1.05999 1.17761 0.86176 0.74716 0.74233 1.93248 1.86567 1.96057 1.39214 1.93232 1.96048 1.38987 1.86273 1.93225 1.83982 1.65570 1.72338 1.21923 0.96449 0.96617 0.94036 1.42481 1.16877 1.65910 1.11251 1.19200 0.92003 1.27931 0.98105 0.90832 1.24734 0.98036 1.01447 0.96290 1.69654 1.35239 1.48662 1.04033 0.86273 0.84108 0.79286 0.76994 1.21694 1.21824 1.20718 0.94805 0.89638 0.94097 0.93769 0.92447 0.91322 0.91304 0.75094 0.82364 0.80415 0.82223 0.78093 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.18 37.16 0.34 -2.10 16 2 C -0.13 -2.12 5.61 -26.73 -0.15 -2.27 16 3 C 0.16 2.70 2.59 -67.93 -0.18 2.53 16 4 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 5 C 0.11 1.70 5.23 -4.04 -0.02 1.68 16 6 N -0.70 -10.15 5.35 -61.15 -0.33 -10.48 16 7 C 0.55 8.28 7.80 -12.19 -0.10 8.19 16 8 O -0.54 -9.47 16.45 5.35 0.09 -9.38 16 9 C -0.08 -1.01 5.91 -104.65 -0.62 -1.63 16 10 C -0.10 -1.10 9.62 -39.03 -0.38 -1.48 16 11 C 0.11 1.09 11.17 -17.59 -0.20 0.90 16 12 N -0.43 -5.30 9.93 -9.52 -0.09 -5.39 16 13 C 0.03 0.32 6.29 -82.63 -0.52 -0.20 16 14 C 0.53 6.13 3.43 36.01 0.12 6.25 16 15 F -0.17 -2.04 17.30 2.25 0.04 -2.00 16 16 F -0.16 -1.98 17.03 2.25 0.04 -1.94 16 17 F -0.17 -1.88 16.44 2.25 0.04 -1.85 16 18 C -0.07 -0.86 9.00 -39.03 -0.35 -1.21 16 19 N -0.72 -15.08 4.51 -53.42 -0.24 -15.32 16 20 C -0.24 -5.69 7.75 -15.06 -0.12 -5.80 16 21 H 0.07 1.70 7.32 -52.49 -0.38 1.32 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.93 -25.24 13.06 55.49 0.72 -24.51 16 24 Si 0.90 20.34 29.55 -169.99 -5.02 15.32 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.70 5.99 -51.93 -0.31 1.39 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 35 H 0.41 5.82 6.28 -40.82 -0.26 5.57 16 36 H 0.16 1.54 6.54 -52.48 -0.34 1.19 16 37 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.16 1.89 7.29 -52.48 -0.38 1.50 16 39 H 0.38 8.88 7.80 -40.82 -0.32 8.56 16 40 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -28.17 354.54 -6.18 -34.34 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -4.51 Total: 11.32 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.25 Total: 4.55 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.06 Total: -55.71 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.11 Total: -5.78 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.17 -6.18 -34.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714116937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.720 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds