Wall clock time and date at job start Tue Mar 31 2020 16:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21518 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.48151 * 120.00155 * 179.97438 * 7 6 5 10 10 C 1.39835 * 120.92282 * 359.72755 * 9 7 6 11 11 C 1.38123 * 119.00446 * 179.75463 * 10 9 7 12 12 N 1.31830 * 120.89488 * 0.52892 * 11 10 9 13 13 C 1.31801 * 122.04797 * 359.73416 * 12 11 10 14 14 C 1.50705 * 119.55017 * 180.02562 * 13 12 11 15 15 F 1.39899 * 109.46758 * 269.98427 * 14 13 12 16 16 F 1.39903 * 109.46972 * 29.98425 * 14 13 12 17 17 F 1.39897 * 109.46694 * 149.98416 * 14 13 12 18 18 C 1.38171 * 120.89394 * 359.97438 * 13 12 11 19 19 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 20 20 C 1.36941 * 119.99583 * 85.00384 * 19 3 2 21 21 H 1.07999 * 120.00378 * 359.97438 * 20 19 3 22 22 C 1.38814 * 119.99657 * 179.97438 * 20 19 3 23 23 N 1.31616 * 120.00233 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99719 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47101 * 89.99948 * 24 22 20 26 26 H 1.48499 * 109.46824 * 209.99835 * 24 22 20 27 27 H 1.48496 * 109.46857 * 329.99662 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 34 34 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 35 35 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 36 36 H 1.08003 * 120.49644 * 359.97438 * 10 9 7 37 37 H 1.08000 * 119.55443 * 180.27043 * 11 10 9 38 38 H 1.08005 * 120.49525 * 179.97438 * 18 13 12 39 39 H 0.96999 * 120.00274 * 264.99733 * 19 3 2 40 40 H 0.97001 * 119.99757 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1649 2.1467 0.2587 9 6 5.8895 4.4510 -0.0350 10 6 5.0107 5.5192 -0.2398 11 6 5.5230 6.7977 -0.3425 12 7 6.8206 7.0156 -0.2604 13 6 7.6836 6.0372 -0.0733 14 6 9.1552 6.3504 0.0126 15 9 9.7195 6.2933 -1.2663 16 9 9.3287 7.6337 0.5421 17 9 9.7834 5.4149 0.8417 18 6 7.2572 4.7283 0.0463 19 7 1.6525 2.0974 -1.2519 20 6 0.4156 2.6734 -1.3689 21 1 -0.2743 2.6446 -0.5385 22 6 0.0486 3.2944 -2.5549 23 7 0.8896 3.3300 -3.5668 24 14 -1.6383 4.0807 -2.7143 25 1 -1.5656 5.5000 -2.2834 26 1 -2.0832 4.0153 -4.1296 27 1 -2.6071 3.3520 -1.8567 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8499 1.0378 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4409 3.5484 -0.1309 36 1 3.9469 5.3474 -0.3129 37 1 4.8519 7.6298 -0.4963 38 1 7.9701 3.9315 0.1991 39 1 2.2720 2.1231 -1.9978 40 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714116937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:37 Heat of formation + Delta-G solvation = -160.471981 kcal Electronic energy + Delta-G solvation = -27997.311603 eV Core-core repulsion = 23396.665498 eV Total energy + Delta-G solvation = -4600.646105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.29532 -48.82533 -48.75145 -41.92998 -40.37684 -38.28856 -35.47672 -34.40592 -33.84948 -33.31488 -31.47851 -29.59385 -27.86151 -26.31932 -25.19005 -24.23158 -23.72162 -21.85038 -21.46052 -20.03816 -19.67162 -19.60779 -19.11771 -18.31428 -17.67112 -17.06972 -16.88928 -16.62498 -16.32717 -15.83682 -15.71955 -15.64929 -15.54728 -15.21878 -15.17298 -15.02047 -14.92421 -14.90792 -14.81294 -14.54367 -14.18378 -13.92717 -13.74159 -12.98184 -12.94388 -12.79075 -12.72077 -12.36465 -12.10526 -11.86934 -11.63602 -11.53682 -11.30430 -11.30191 -10.95074 -10.83530 -10.67694 -10.14040 -8.95470 -7.85097 -5.12117 -0.71823 -0.43320 1.27131 1.52563 1.56097 1.58242 1.61403 1.93761 2.35270 2.38940 2.62328 2.78628 3.23081 3.33967 3.44010 3.49860 3.59468 3.67149 3.84052 3.92722 3.99844 4.34603 4.39265 4.46622 4.50259 4.58103 4.69089 4.76505 4.89397 5.09893 5.12868 5.17291 5.23116 5.38851 5.57542 5.65532 5.74503 6.34328 6.34924 6.39901 6.99392 7.43865 8.14517 8.39497 9.37321 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.002920 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.245101 B = 9587.531295 C =10932.496367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.165 3.835 4 H 0.064 0.936 5 C 0.120 3.880 6 N -0.695 5.695 7 C 0.555 3.445 8 O -0.567 6.567 9 C -0.092 4.092 10 C -0.092 4.092 11 C 0.113 3.887 12 N -0.445 5.445 13 C 0.020 3.980 14 C 0.530 3.470 15 F -0.173 7.173 16 F -0.166 7.166 17 F -0.167 7.167 18 C -0.072 4.072 19 N -0.728 5.728 20 C -0.215 4.215 21 H 0.081 0.919 22 C -0.067 4.067 23 N -0.965 5.965 24 Si 0.954 3.046 25 H -0.287 1.287 26 H -0.309 1.309 27 H -0.274 1.274 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.414 0.586 36 H 0.172 0.828 37 H 0.212 0.788 38 H 0.160 0.840 39 H 0.373 0.627 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.349 4.486 10.258 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.056 3.944 4 H 0.082 0.918 5 C -0.004 4.004 6 N -0.346 5.346 7 C 0.341 3.659 8 O -0.448 6.448 9 C -0.103 4.103 10 C -0.113 4.113 11 C -0.046 4.046 12 N -0.155 5.155 13 C -0.118 4.118 14 C 0.475 3.525 15 F -0.154 7.154 16 F -0.147 7.147 17 F -0.148 7.148 18 C -0.093 4.093 19 N -0.369 5.369 20 C -0.347 4.347 21 H 0.099 0.901 22 C -0.259 4.259 23 N -0.617 5.617 24 Si 0.785 3.215 25 H -0.214 1.214 26 H -0.236 1.236 27 H -0.199 1.199 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.252 0.748 36 H 0.189 0.811 37 H 0.229 0.771 38 H 0.178 0.822 39 H 0.205 0.795 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.043 4.719 10.376 15.870 hybrid contribution -1.071 -0.178 -0.918 1.422 sum 9.972 4.540 9.457 14.474 Atomic orbital electron populations 1.21702 0.96037 1.00520 1.01843 1.21999 0.96572 0.97460 1.01100 1.20726 0.90642 0.93331 0.89715 0.91817 1.21702 0.94587 0.82027 1.02106 1.45842 1.06477 1.11404 1.70845 1.18204 0.82800 0.87840 0.77035 1.90759 1.56687 1.46266 1.51068 1.20329 0.94097 0.94118 1.01725 1.22969 1.02593 0.92827 0.92870 1.23411 0.89829 0.97494 0.93825 1.67116 1.04875 1.35028 1.08445 1.20856 0.93532 0.91077 1.06345 1.17693 0.86065 0.74640 0.74114 1.93241 1.86612 1.96070 1.39466 1.93225 1.96053 1.39167 1.86292 1.93230 1.83933 1.65449 1.72230 1.21925 0.96424 0.96781 0.94192 1.42597 1.15852 1.66074 1.12359 1.19475 0.92544 1.25227 0.97484 0.90139 1.25287 1.00540 1.03460 0.96632 1.69789 1.36695 1.50867 1.04315 0.85426 0.81466 0.78737 0.75827 1.21414 1.23638 1.19933 0.93090 0.93252 0.93105 0.90615 0.93637 0.89503 0.92559 0.74769 0.81111 0.77100 0.82236 0.79492 0.94480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.18 71.98 0.66 -3.80 16 2 C -0.13 -3.84 5.61 30.60 0.17 -3.66 16 3 C 0.16 5.14 2.59 44.99 0.12 5.26 16 4 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 5 C 0.12 3.42 5.23 86.38 0.45 3.87 16 6 N -0.69 -19.34 5.35 -465.67 -2.49 -21.83 16 7 C 0.55 16.19 7.80 86.88 0.68 16.87 16 8 O -0.57 -19.83 16.45 -3.77 -0.06 -19.89 16 9 C -0.09 -2.25 5.91 -19.88 -0.12 -2.37 16 10 C -0.09 -1.83 9.62 22.63 0.22 -1.62 16 11 C 0.11 2.06 11.17 84.67 0.95 3.01 16 12 N -0.45 -10.21 9.93 -184.04 -1.83 -12.04 16 13 C 0.02 0.47 6.29 42.55 0.27 0.74 16 14 C 0.53 12.00 3.43 71.24 0.24 12.24 16 15 F -0.17 -4.06 17.30 44.97 0.78 -3.28 16 16 F -0.17 -3.86 17.03 44.97 0.77 -3.10 16 17 F -0.17 -3.62 16.44 44.97 0.74 -2.88 16 18 C -0.07 -1.75 9.00 22.63 0.20 -1.54 16 19 N -0.73 -29.71 4.51 -322.93 -1.46 -31.16 16 20 C -0.22 -9.91 7.75 84.03 0.65 -9.26 16 21 H 0.08 3.56 7.32 -2.91 -0.02 3.54 16 22 C -0.07 -3.36 5.50 84.86 0.47 -2.89 16 23 N -0.97 -53.10 13.06 21.65 0.28 -52.81 16 24 Si 0.95 41.70 29.55 68.60 2.03 43.73 16 25 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.31 -14.25 7.11 99.48 0.71 -13.55 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.89 5.99 -2.39 -0.01 1.88 16 30 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.41 11.10 6.28 -92.71 -0.58 10.52 16 36 H 0.17 2.94 6.54 -2.91 -0.02 2.93 16 37 H 0.21 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.16 3.77 7.29 -2.91 -0.02 3.75 16 39 H 0.37 17.16 7.80 -92.71 -0.72 16.44 16 40 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -59.82 354.54 3.53 -56.29 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -0.19 Total: 30.12 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 4.96 Total: 16.84 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -5.49 Total: -117.84 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.06 Total: -19.89 kcal Atomic # 9 Polarization: -11.53 SS G_CDS: 2.28 Total: -9.25 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -59.82 3.53 -56.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714116937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.180 kcal (2) G-P(sol) polarization free energy of solvation -59.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds