Wall clock time and date at job start Tue Mar 31 2020 16:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 H 1.09007 * 109.47067 * 54.99725 * 3 2 1 5 5 C 1.52997 * 109.47347 * 175.00019 * 3 2 1 6 6 N 1.46503 * 109.47283 * 174.99935 * 5 3 2 7 7 C 1.34770 * 120.00131 * 179.97438 * 6 5 3 8 8 O 1.21549 * 120.00059 * 0.02562 * 7 6 5 9 9 C 1.47847 * 120.00189 * 179.97438 * 7 6 5 10 10 C 1.40021 * 120.55378 * 0.02562 * 9 7 6 11 11 C 1.38361 * 118.28541 * 179.72193 * 10 9 7 12 12 C 1.38357 * 119.29991 * 0.25622 * 11 10 9 13 13 N 1.31920 * 121.08440 * 0.02562 * 12 11 10 14 14 C 1.31704 * 121.87701 * 359.97438 * 13 12 11 15 15 C 1.50693 * 119.71575 * 179.97438 * 14 13 12 16 16 F 1.39906 * 109.47287 * 5.00227 * 15 14 13 17 17 F 1.39900 * 109.47119 * 124.99526 * 15 14 13 18 18 F 1.39895 * 109.47239 * 244.99882 * 15 14 13 19 19 N 1.46500 * 109.47136 * 295.00147 * 3 2 1 20 20 C 1.36941 * 119.99953 * 84.99740 * 19 3 2 21 21 H 1.07996 * 120.00306 * 0.02562 * 20 19 3 22 22 C 1.38820 * 119.99951 * 180.02562 * 20 19 3 23 23 N 1.31615 * 119.99615 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99779 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47461 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46967 * 120.00170 * 24 22 20 27 27 H 1.48507 * 109.46967 * 239.99879 * 24 22 20 28 28 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47515 * 299.99869 * 1 2 3 30 30 H 1.08999 * 109.47311 * 59.99993 * 1 2 3 31 31 H 1.08997 * 109.47003 * 240.00066 * 2 1 3 32 32 H 1.08999 * 109.47311 * 120.00007 * 2 1 3 33 33 H 1.09004 * 109.46944 * 54.99977 * 5 3 2 34 34 H 1.08994 * 109.47288 * 295.00057 * 5 3 2 35 35 H 0.97002 * 119.99869 * 0.02562 * 6 5 3 36 36 H 1.08002 * 120.86196 * 0.02562 * 10 9 7 37 37 H 1.07994 * 120.34675 * 180.27415 * 11 10 9 38 38 H 1.08005 * 119.45673 * 179.97438 * 12 11 10 39 39 H 0.97004 * 120.00041 * 264.99939 * 19 3 2 40 40 H 0.97001 * 119.99386 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5647 1.4444 0.1257 6 7 4.0630 2.8169 0.0059 7 6 5.3855 3.0632 0.0868 8 8 6.1650 2.1465 0.2587 9 6 5.8883 4.4482 -0.0347 10 6 5.0008 5.5128 -0.2333 11 6 5.5218 6.7905 -0.3347 12 6 6.8902 6.9730 -0.2428 13 7 7.7031 5.9501 -0.0610 14 6 7.2555 4.7157 0.0415 15 6 8.2280 3.5832 0.2481 16 9 9.5178 4.0999 0.4110 17 9 7.8672 2.8613 1.3908 18 9 8.2018 2.7370 -0.8657 19 7 1.6524 2.0975 -1.2518 20 6 0.4155 2.6734 -1.3688 21 1 -0.2741 2.6452 -0.5381 22 6 0.0480 3.2936 -2.5551 23 7 0.8882 3.3276 -3.5676 24 14 -1.6389 4.0799 -2.7144 25 1 -2.3882 3.9057 -1.4442 26 1 -1.4846 5.5281 -3.0041 27 1 -2.3852 3.4303 -3.8218 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9953 0.8311 -0.6660 34 1 3.8498 1.0378 1.0960 35 1 3.4409 3.5484 -0.1309 36 1 3.9366 5.3417 -0.3008 37 1 4.8673 7.6365 -0.4837 38 1 7.2997 7.9693 -0.3219 39 1 2.2719 2.1232 -1.9978 40 1 0.6316 3.7613 -4.3964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715073620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:29 Heat of formation + Delta-G solvation = -154.362129 kcal Electronic energy + Delta-G solvation = -29119.432263 eV Core-core repulsion = 24519.051101 eV Total energy + Delta-G solvation = -4600.381162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.08865 -48.62289 -48.54707 -41.89796 -40.27184 -38.28042 -35.50638 -34.36917 -33.75721 -33.31431 -31.48494 -29.62530 -27.72238 -26.08763 -25.35287 -24.13710 -23.46287 -21.87759 -21.42261 -19.93026 -19.47935 -19.45086 -19.28123 -18.57056 -17.78326 -17.02778 -16.61141 -16.44335 -16.39991 -15.82952 -15.76479 -15.38407 -15.32579 -15.06007 -15.00669 -14.90751 -14.74409 -14.72073 -14.57851 -14.28360 -14.09658 -14.00201 -13.70819 -13.09455 -12.97538 -12.79981 -12.76295 -12.34736 -12.06008 -11.85458 -11.62416 -11.39314 -11.30785 -11.25383 -10.93205 -10.79534 -10.61440 -10.08693 -8.96420 -7.85662 -5.12992 -0.79479 -0.19739 1.44790 1.50910 1.55285 1.61651 1.65470 1.98205 2.43981 2.48978 2.61627 2.89027 3.37595 3.40687 3.49554 3.51949 3.72084 3.75452 3.89942 3.96588 4.08101 4.26311 4.38105 4.49157 4.57463 4.69242 4.75226 4.87608 4.88993 5.09985 5.12717 5.22143 5.29127 5.40061 5.56794 5.64779 5.73530 6.34302 6.36069 6.43620 7.01805 7.42790 8.13286 8.38836 9.37201 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.014316 B = 0.003695 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.409252 B = 7575.544656 C = 8966.599640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.165 3.835 4 H 0.064 0.936 5 C 0.122 3.878 6 N -0.694 5.694 7 C 0.543 3.457 8 O -0.556 6.556 9 C -0.149 4.149 10 C -0.043 4.043 11 C -0.124 4.124 12 C 0.126 3.874 13 N -0.469 5.469 14 C 0.068 3.932 15 C 0.525 3.475 16 F -0.172 7.172 17 F -0.166 7.166 18 F -0.175 7.175 19 N -0.728 5.728 20 C -0.214 4.214 21 H 0.082 0.918 22 C -0.068 4.068 23 N -0.967 5.967 24 Si 0.956 3.044 25 H -0.267 1.267 26 H -0.296 1.296 27 H -0.307 1.307 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.412 0.588 36 H 0.165 0.835 37 H 0.197 0.803 38 H 0.218 0.782 39 H 0.372 0.628 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.893 7.256 9.902 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.082 0.918 5 C -0.002 4.002 6 N -0.345 5.345 7 C 0.329 3.671 8 O -0.436 6.436 9 C -0.155 4.155 10 C -0.069 4.069 11 C -0.143 4.143 12 C -0.031 4.031 13 N -0.178 5.178 14 C -0.072 4.072 15 C 0.470 3.530 16 F -0.154 7.154 17 F -0.147 7.147 18 F -0.157 7.157 19 N -0.368 5.368 20 C -0.346 4.346 21 H 0.099 0.901 22 C -0.261 4.261 23 N -0.618 5.618 24 Si 0.787 3.213 25 H -0.191 1.191 26 H -0.223 1.223 27 H -0.235 1.235 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.251 0.749 36 H 0.183 0.817 37 H 0.214 0.786 38 H 0.234 0.766 39 H 0.204 0.796 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.151 6.757 10.166 15.876 hybrid contribution -1.673 0.041 -1.014 1.957 sum 8.478 6.797 9.152 14.207 Atomic orbital electron populations 1.21694 0.95884 1.00557 1.01865 1.21993 0.96685 0.97412 1.01032 1.20718 0.90537 0.93360 0.89732 0.91827 1.21665 0.94599 0.82057 1.01890 1.45750 1.06241 1.11262 1.71227 1.18274 0.83181 0.88154 0.77505 1.90844 1.56042 1.46370 1.50364 1.20688 0.94041 0.95537 1.05222 1.22228 1.01087 0.91954 0.91616 1.22882 0.97358 0.98311 0.95703 1.23867 0.90262 0.98349 0.90630 1.67340 1.41072 0.98007 1.11365 1.20928 0.90627 0.93067 1.02611 1.17752 0.79074 0.81407 0.74802 1.93184 1.40153 1.86691 1.95323 1.93225 1.91463 1.79247 1.50741 1.93199 1.96366 1.72945 1.53162 1.42607 1.15866 1.66063 1.12304 1.19533 0.92458 1.25109 0.97505 0.90066 1.25313 1.00653 1.03520 0.96597 1.69810 1.36713 1.51004 1.04305 0.85326 0.81136 0.77545 0.77270 1.19100 1.22334 1.23506 0.93040 0.93066 0.93197 0.93710 0.90717 0.92807 0.89774 0.74941 0.81741 0.78557 0.76588 0.79559 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.18 71.98 0.66 -3.89 16 2 C -0.13 -4.03 5.61 30.59 0.17 -3.86 16 3 C 0.17 5.45 2.59 44.99 0.12 5.56 16 4 H 0.06 2.03 8.08 -2.38 -0.02 2.01 16 5 C 0.12 3.79 5.23 86.38 0.45 4.24 16 6 N -0.69 -21.20 5.34 -465.98 -2.49 -23.69 16 7 C 0.54 17.80 7.59 86.79 0.66 18.46 16 8 O -0.56 -21.31 11.34 -3.87 -0.04 -21.35 16 9 C -0.15 -4.15 5.86 -19.99 -0.12 -4.27 16 10 C -0.04 -0.88 9.65 22.73 0.22 -0.66 16 11 C -0.12 -1.66 10.10 22.33 0.23 -1.44 16 12 C 0.13 1.89 11.17 84.71 0.95 2.83 16 13 N -0.47 -11.43 9.73 -182.85 -1.78 -13.21 16 14 C 0.07 1.97 6.30 42.88 0.27 2.24 16 15 C 0.53 17.19 2.78 71.23 0.20 17.39 16 16 F -0.17 -5.31 16.86 44.97 0.76 -4.56 16 17 F -0.17 -5.76 14.43 44.97 0.65 -5.11 16 18 F -0.18 -6.33 15.57 44.97 0.70 -5.63 16 19 N -0.73 -30.67 4.51 -322.93 -1.46 -32.12 16 20 C -0.21 -10.04 7.75 84.03 0.65 -9.39 16 21 H 0.08 3.66 7.32 -2.91 -0.02 3.64 16 22 C -0.07 -3.49 5.50 84.86 0.47 -3.02 16 23 N -0.97 -53.88 13.06 21.65 0.28 -53.59 16 24 Si 0.96 41.99 29.55 68.60 2.03 44.02 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.30 -13.04 7.11 99.48 0.71 -12.33 16 27 H -0.31 -14.12 7.11 99.48 0.71 -13.41 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.95 5.99 -2.39 -0.01 1.93 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.41 12.02 6.25 -92.71 -0.58 11.44 16 36 H 0.17 3.06 6.52 -2.91 -0.02 3.04 16 37 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.22 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.37 17.73 7.80 -92.71 -0.72 17.01 16 40 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -65.84 346.26 3.38 -62.46 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.19 Total: 28.57 kcal Atomic # 6 Polarization: 19.29 SS G_CDS: 4.92 Total: 24.21 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -5.44 Total: -122.61 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.04 Total: -21.35 kcal Atomic # 9 Polarization: -17.40 SS G_CDS: 2.11 Total: -15.29 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -65.84 3.38 -62.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715073620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.901 kcal (2) G-P(sol) polarization free energy of solvation -65.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds