Wall clock time and date at job start Tue Mar 31 2020 15:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35685 * 116.99972 * 2 1 4 4 C 1.38884 * 119.61875 * 180.02562 * 3 2 1 5 5 C 1.39621 * 118.93965 * 180.02562 * 4 3 2 6 6 C 1.48056 * 120.89587 * 179.97438 * 5 4 3 7 7 O 1.21453 * 120.00227 * 359.97438 * 6 5 4 8 8 O 1.34615 * 119.99730 * 179.72384 * 6 5 4 9 9 C 1.36176 * 117.00090 * 180.27335 * 8 6 5 10 10 C 1.40176 * 126.08511 * 269.69024 * 9 8 6 11 11 C 1.50698 * 125.88830 * 359.97438 * 10 9 8 12 12 N 1.30860 * 108.22577 * 179.85317 * 10 9 8 13 13 N 1.40071 * 108.30583 * 0.40142 * 12 10 9 14 14 C 1.46498 * 126.01467 * 179.76317 * 13 12 10 15 15 C 1.50697 * 109.46910 * 269.97626 * 14 13 12 16 16 H 1.07996 * 120.00272 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99756 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99862 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46876 * 90.00289 * 19 17 15 21 21 H 1.48510 * 109.46892 * 209.99855 * 19 17 15 22 22 H 1.48496 * 109.47114 * 329.99897 * 19 17 15 23 23 C 1.35237 * 107.96539 * 359.74310 * 13 12 10 24 24 C 1.50697 * 126.16565 * 179.97438 * 23 13 12 25 25 C 1.40006 * 118.20892 * 0.24976 * 5 4 3 26 26 C 1.37978 * 119.12325 * 359.52182 * 25 5 4 27 27 N 1.31907 * 120.98161 * 0.49695 * 26 25 5 28 28 H 1.08994 * 109.47373 * 59.99553 * 1 2 3 29 29 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46788 * 299.99176 * 1 2 3 31 31 H 1.08008 * 120.53285 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.47233 * 89.99737 * 11 10 9 33 33 H 1.08999 * 109.47325 * 210.00442 * 11 10 9 34 34 H 1.09005 * 109.46984 * 329.99972 * 11 10 9 35 35 H 1.08998 * 109.47416 * 29.97694 * 14 13 12 36 36 H 1.09002 * 109.46740 * 149.97515 * 14 13 12 37 37 H 0.97005 * 119.99278 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.47700 * 270.00122 * 24 23 13 39 39 H 1.09005 * 109.46912 * 30.00496 * 24 23 13 40 40 H 1.09005 * 109.47224 * 149.99850 * 24 23 13 41 41 H 1.08003 * 120.44116 * 179.75565 * 25 5 4 42 42 H 1.08001 * 119.50690 * 180.22901 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4324 1.2724 -0.0005 5 6 4.0515 2.5239 0.0000 6 6 5.5273 2.6420 0.0000 7 8 6.2166 1.6420 0.0000 8 8 6.1052 3.8578 -0.0050 9 6 7.4664 3.8953 -0.0105 10 6 8.2960 3.9268 1.1190 11 6 7.8353 3.9255 2.5538 12 7 9.5397 3.9548 0.7127 13 7 9.5451 3.9515 -0.6880 14 6 10.7329 3.9820 -1.5449 15 6 11.1008 5.4127 -1.8426 16 1 10.5093 6.2186 -1.4341 17 6 12.1927 5.6927 -2.6367 18 7 12.9128 4.7113 -3.1346 19 14 12.6483 7.4663 -3.0064 20 1 13.5880 7.9624 -1.9690 21 1 13.2976 7.5428 -4.3398 22 1 11.4217 8.3032 -3.0043 23 6 8.2608 3.9147 -1.1100 24 6 7.7958 3.8987 -2.5434 25 6 3.2391 3.6641 0.0065 26 6 1.8677 3.5116 0.0020 27 7 1.3179 2.3126 0.0015 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 4.0231 0.3682 -0.0005 32 1 7.7521 2.8980 2.9078 33 1 8.5572 4.4641 3.1677 34 1 6.8632 4.4137 2.6237 35 1 11.5621 3.4924 -1.0341 36 1 10.5214 3.4594 -2.4778 37 1 13.6807 4.9084 -3.6935 38 1 7.6550 4.9221 -2.8911 39 1 8.5443 3.4043 -3.1626 40 1 6.8518 3.3581 -2.6132 41 1 3.6799 4.6501 0.0111 42 1 1.2352 4.3870 0.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772136178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:23 Heat of formation + Delta-G solvation = -1.703493 kcal Electronic energy + Delta-G solvation = -27448.229149 eV Core-core repulsion = 23396.324503 eV Total energy + Delta-G solvation = -4051.904646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.44589 -40.91205 -39.72465 -38.14134 -36.62003 -34.07238 -33.07853 -32.64153 -31.21392 -30.80117 -29.12602 -27.72949 -26.87914 -26.04789 -25.06214 -23.66336 -22.90535 -21.69134 -19.79700 -19.28345 -18.84398 -17.77560 -17.09457 -16.76924 -16.48074 -16.40116 -15.99240 -15.74946 -15.20556 -14.70962 -14.59860 -14.38625 -14.24273 -13.78866 -13.57007 -13.31628 -13.02028 -12.81958 -12.58647 -12.51696 -12.12454 -12.08789 -12.07827 -11.77830 -11.61744 -11.57681 -11.10767 -11.04863 -10.85905 -10.80376 -10.35272 -10.32231 -10.10492 -9.83648 -9.80663 -8.91214 -8.71330 -8.43621 -7.79828 -6.33375 -4.41600 0.27139 0.77686 2.11008 2.45819 2.55085 2.80560 3.17724 3.20580 3.24300 3.29825 3.44998 3.47222 3.91218 4.23577 4.42332 4.64120 4.65944 4.86426 4.92661 4.96808 5.01430 5.06541 5.21744 5.27586 5.31073 5.42003 5.52554 5.68260 5.76545 5.85349 5.89539 5.90956 6.04530 6.05944 6.22206 6.41742 6.48095 6.81908 6.85964 6.92437 7.16159 7.38986 7.55234 7.75021 7.77732 7.99997 8.36681 8.64066 9.25171 10.74467 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.002446 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.211890 B =11443.246301 C =11675.464682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.305 6.305 3 C 0.316 3.684 4 C -0.130 4.130 5 C -0.032 4.032 6 C 0.485 3.515 7 O -0.476 6.476 8 O -0.241 6.241 9 C -0.109 4.109 10 C 0.062 3.938 11 C -0.068 4.068 12 N -0.278 5.278 13 N -0.312 5.312 14 C 0.257 3.743 15 C -0.540 4.540 16 H 0.066 0.934 17 C 0.067 3.933 18 N -0.890 5.890 19 Si 0.908 3.092 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.110 3.890 24 C -0.086 4.086 25 C -0.157 4.157 26 C 0.134 3.866 27 N -0.523 5.523 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.156 0.844 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.269 0.731 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.157 0.843 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.611 -4.169 5.187 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.137 3.863 4 C -0.151 4.151 5 C -0.041 4.041 6 C 0.328 3.672 7 O -0.361 6.361 8 O -0.152 6.152 9 C -0.163 4.163 10 C -0.103 4.103 11 C -0.127 4.127 12 N -0.103 5.103 13 N -0.091 5.091 14 C 0.140 3.860 15 C -0.578 4.578 16 H 0.084 0.916 17 C -0.137 4.137 18 N -0.527 5.527 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.196 1.196 23 C -0.025 4.025 24 C -0.144 4.144 25 C -0.177 4.177 26 C -0.022 4.022 27 N -0.247 5.247 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.174 0.826 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.175 0.825 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -22.621 -4.851 5.328 23.741 hybrid contribution 0.297 0.986 -0.558 1.172 sum -22.324 -3.865 4.770 23.153 Atomic orbital electron populations 1.22897 0.76870 1.03172 1.02556 1.86266 1.23134 1.23992 1.87780 1.19550 0.88732 0.84947 0.93106 1.21126 0.92217 0.98841 1.02906 1.19259 0.90447 0.93711 1.00681 1.21668 0.88249 0.83341 0.73955 1.90858 1.64372 1.37925 1.42981 1.84733 1.18702 1.29097 1.82681 1.17570 0.80340 1.26320 0.92063 1.22271 0.90482 1.01426 0.96158 1.20082 1.01184 1.02443 0.88954 1.77407 1.18462 1.24032 0.90357 1.49211 1.05853 1.50075 1.03997 1.19833 0.79182 0.99317 0.87707 1.21269 1.13471 0.90970 1.32123 0.91595 1.24937 0.95383 0.98403 0.95000 1.69922 1.17965 1.31659 1.33155 0.86318 0.78861 0.83512 0.77790 1.20228 1.20817 1.19604 1.20910 0.85994 0.99228 0.96321 1.20374 1.01203 1.03609 0.89232 1.22407 0.94494 0.99896 1.00902 1.22457 0.92585 0.93608 0.93514 1.67189 1.41334 0.99000 1.17219 0.92145 0.88439 0.92153 0.82600 0.91120 0.90696 0.90946 0.92420 0.92635 0.92112 0.89534 0.90141 0.91267 0.82548 0.81306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.38 101.05 1.05 1.32 16 2 O -0.30 -3.11 10.47 -18.76 -0.20 -3.31 16 3 C 0.32 3.45 7.49 -17.17 -0.13 3.33 16 4 C -0.13 -1.52 9.61 -38.83 -0.37 -1.89 16 5 C -0.03 -0.39 5.91 -104.69 -0.62 -1.00 16 6 C 0.49 7.50 7.87 34.76 0.27 7.77 16 7 O -0.48 -8.86 16.21 -19.23 -0.31 -9.17 16 8 O -0.24 -3.93 9.48 -25.33 -0.24 -4.17 16 9 C -0.11 -2.13 5.35 -39.78 -0.21 -2.34 16 10 C 0.06 1.24 7.23 -82.28 -0.59 0.65 16 11 C -0.07 -1.02 10.44 36.00 0.38 -0.64 16 12 N -0.28 -6.44 12.57 33.73 0.42 -6.01 16 13 N -0.31 -7.32 3.60 -58.16 -0.21 -7.53 16 14 C 0.26 6.49 6.00 -5.20 -0.03 6.46 16 15 C -0.54 -14.55 9.39 -34.44 -0.32 -14.88 16 16 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 17 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -24.64 13.29 55.43 0.74 -23.91 16 19 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.11 2.27 6.95 -82.02 -0.57 1.70 16 24 C -0.09 -1.46 10.09 36.00 0.36 -1.10 16 25 C -0.16 -1.45 9.70 -39.01 -0.38 -1.83 16 26 C 0.13 1.08 11.17 -17.61 -0.20 0.89 16 27 N -0.52 -5.22 9.18 -13.38 -0.12 -5.34 16 28 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.16 1.83 7.74 -52.48 -0.41 1.42 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.06 1.39 7.06 -51.93 -0.37 1.02 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.38 7.09 -51.93 -0.37 1.01 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.16 1.22 7.71 -52.48 -0.40 0.81 16 42 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -32.39 375.67 -6.06 -38.45 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.31 Total: -0.47 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.46 Total: 0.11 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.83 Total: -42.79 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.75 Total: -16.65 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.39 -6.06 -38.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772136178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.748 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds