Wall clock time and date at job start Tue Mar 31 2020 15:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35685 * 116.99972 * 2 1 4 4 C 1.38884 * 119.61875 * 180.02562 * 3 2 1 5 5 C 1.39621 * 118.93965 * 180.02562 * 4 3 2 6 6 C 1.48056 * 120.89587 * 179.97438 * 5 4 3 7 7 O 1.21453 * 120.00227 * 359.97438 * 6 5 4 8 8 O 1.34615 * 119.99730 * 179.72384 * 6 5 4 9 9 C 1.36176 * 117.00090 * 180.27335 * 8 6 5 10 10 C 1.40176 * 126.08511 * 269.69024 * 9 8 6 11 11 C 1.50698 * 125.88830 * 359.97438 * 10 9 8 12 12 N 1.30860 * 108.22577 * 179.85317 * 10 9 8 13 13 N 1.40071 * 108.30583 * 0.40142 * 12 10 9 14 14 C 1.46498 * 126.01467 * 179.76317 * 13 12 10 15 15 C 1.50697 * 109.46910 * 269.97626 * 14 13 12 16 16 H 1.07996 * 120.00272 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99756 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99862 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46876 * 90.00289 * 19 17 15 21 21 H 1.48510 * 109.46892 * 209.99855 * 19 17 15 22 22 H 1.48496 * 109.47114 * 329.99897 * 19 17 15 23 23 C 1.35237 * 107.96539 * 359.74310 * 13 12 10 24 24 C 1.50697 * 126.16565 * 179.97438 * 23 13 12 25 25 C 1.40006 * 118.20892 * 0.24976 * 5 4 3 26 26 C 1.37978 * 119.12325 * 359.52182 * 25 5 4 27 27 N 1.31907 * 120.98161 * 0.49695 * 26 25 5 28 28 H 1.08994 * 109.47373 * 59.99553 * 1 2 3 29 29 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46788 * 299.99176 * 1 2 3 31 31 H 1.08008 * 120.53285 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.47233 * 89.99737 * 11 10 9 33 33 H 1.08999 * 109.47325 * 210.00442 * 11 10 9 34 34 H 1.09005 * 109.46984 * 329.99972 * 11 10 9 35 35 H 1.08998 * 109.47416 * 29.97694 * 14 13 12 36 36 H 1.09002 * 109.46740 * 149.97515 * 14 13 12 37 37 H 0.97005 * 119.99278 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.47700 * 270.00122 * 24 23 13 39 39 H 1.09005 * 109.46912 * 30.00496 * 24 23 13 40 40 H 1.09005 * 109.47224 * 149.99850 * 24 23 13 41 41 H 1.08003 * 120.44116 * 179.75565 * 25 5 4 42 42 H 1.08001 * 119.50690 * 180.22901 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4324 1.2724 -0.0005 5 6 4.0515 2.5239 0.0000 6 6 5.5273 2.6420 0.0000 7 8 6.2166 1.6420 0.0000 8 8 6.1052 3.8578 -0.0050 9 6 7.4664 3.8953 -0.0105 10 6 8.2960 3.9268 1.1190 11 6 7.8353 3.9255 2.5538 12 7 9.5397 3.9548 0.7127 13 7 9.5451 3.9515 -0.6880 14 6 10.7329 3.9820 -1.5449 15 6 11.1008 5.4127 -1.8426 16 1 10.5093 6.2186 -1.4341 17 6 12.1927 5.6927 -2.6367 18 7 12.9128 4.7113 -3.1346 19 14 12.6483 7.4663 -3.0064 20 1 13.5880 7.9624 -1.9690 21 1 13.2976 7.5428 -4.3398 22 1 11.4217 8.3032 -3.0043 23 6 8.2608 3.9147 -1.1100 24 6 7.7958 3.8987 -2.5434 25 6 3.2391 3.6641 0.0065 26 6 1.8677 3.5116 0.0020 27 7 1.3179 2.3126 0.0015 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 4.0231 0.3682 -0.0005 32 1 7.7521 2.8980 2.9078 33 1 8.5572 4.4641 3.1677 34 1 6.8632 4.4137 2.6237 35 1 11.5621 3.4924 -1.0341 36 1 10.5214 3.4594 -2.4778 37 1 13.6807 4.9084 -3.6935 38 1 7.6550 4.9221 -2.8911 39 1 8.5443 3.4043 -3.1626 40 1 6.8518 3.3581 -2.6132 41 1 3.6799 4.6501 0.0111 42 1 1.2352 4.3870 0.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772136178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:22 Heat of formation + Delta-G solvation = -22.449622 kcal Electronic energy + Delta-G solvation = -27449.128768 eV Core-core repulsion = 23396.324503 eV Total energy + Delta-G solvation = -4052.804266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.84497 -41.89097 -41.01589 -38.91252 -37.97287 -35.91824 -34.40763 -33.97310 -32.49761 -31.85886 -30.71476 -28.50353 -28.13358 -27.79421 -26.24258 -24.65044 -24.42716 -22.88193 -21.15718 -20.86431 -19.90498 -18.97390 -18.81529 -18.13217 -17.38665 -17.35153 -17.09772 -16.86286 -16.68235 -16.28079 -16.00054 -15.41902 -15.08301 -14.90767 -14.80045 -14.56076 -14.43780 -14.23144 -14.17527 -13.71524 -13.44562 -13.35370 -13.24057 -13.18539 -12.90309 -12.72262 -12.68182 -12.52988 -12.28126 -12.21172 -12.11781 -11.75826 -11.37707 -11.19863 -10.89022 -10.76919 -10.11930 -9.64466 -9.42294 -8.37649 -6.55113 -0.64944 0.03209 0.67975 1.06764 1.33760 1.37914 1.39037 1.49417 1.60870 1.84923 2.23691 2.32669 2.64556 2.93749 3.22841 3.35262 3.57981 3.73012 3.82206 3.87390 3.98728 4.15195 4.33315 4.43420 4.47351 4.50561 4.58162 4.59206 4.63802 4.69200 4.74461 4.78504 4.79358 4.82880 4.97314 4.99527 5.16429 5.21774 5.24965 5.48697 5.67926 5.73148 5.99856 6.12342 6.53547 6.64335 6.66185 6.74254 7.16083 8.69932 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.002446 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.211890 B =11443.246301 C =11675.464682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.320 6.320 3 C 0.310 3.690 4 C -0.144 4.144 5 C -0.045 4.045 6 C 0.492 3.508 7 O -0.514 6.514 8 O -0.230 6.230 9 C -0.108 4.108 10 C 0.063 3.937 11 C -0.067 4.067 12 N -0.323 5.323 13 N -0.338 5.338 14 C 0.273 3.727 15 C -0.554 4.554 16 H 0.055 0.945 17 C 0.022 3.978 18 N -0.918 5.918 19 Si 0.975 3.025 20 H -0.275 1.275 21 H -0.271 1.271 22 H -0.266 1.266 23 C 0.096 3.904 24 C -0.083 4.083 25 C -0.145 4.145 26 C 0.147 3.853 27 N -0.524 5.524 28 H 0.062 0.938 29 H 0.121 0.879 30 H 0.063 0.937 31 H 0.145 0.855 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.028 0.972 36 H 0.051 0.949 37 H 0.274 0.726 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.176 0.824 42 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.470 -2.465 5.361 27.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.228 6.228 3 C 0.131 3.869 4 C -0.165 4.165 5 C -0.053 4.053 6 C 0.337 3.663 7 O -0.402 6.402 8 O -0.141 6.141 9 C -0.162 4.162 10 C -0.103 4.103 11 C -0.125 4.125 12 N -0.147 5.147 13 N -0.119 5.119 14 C 0.155 3.845 15 C -0.592 4.592 16 H 0.073 0.927 17 C -0.179 4.179 18 N -0.556 5.556 19 Si 0.798 3.202 20 H -0.200 1.200 21 H -0.196 1.196 22 H -0.190 1.190 23 C -0.037 4.037 24 C -0.141 4.141 25 C -0.165 4.165 26 C -0.009 4.009 27 N -0.249 5.249 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.194 0.806 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -25.518 -3.164 5.506 26.296 hybrid contribution 0.997 0.407 -0.551 1.210 sum -24.520 -2.757 4.956 25.168 Atomic orbital electron populations 1.23142 0.75092 1.04892 1.02772 1.86250 1.24947 1.23916 1.87641 1.19566 0.88461 0.85580 0.93257 1.21058 0.92811 0.98482 1.04127 1.19071 0.88206 0.95004 1.03063 1.22166 0.89499 0.82209 0.72422 1.90850 1.65486 1.38881 1.44963 1.84722 1.16828 1.29810 1.82755 1.17601 0.81649 1.25386 0.91593 1.23086 0.89650 0.99075 0.98467 1.20284 1.02615 1.03624 0.85980 1.77333 1.20583 1.26361 0.90411 1.48966 1.06177 1.52478 1.04230 1.19366 0.79389 0.98370 0.87408 1.21392 1.13930 0.91321 1.32568 0.92697 1.25785 0.94999 1.02649 0.94493 1.70014 1.18365 1.33729 1.33513 0.85298 0.78635 0.78305 0.77931 1.20013 1.19617 1.18981 1.21547 0.85228 0.98579 0.98314 1.20478 1.01828 1.04681 0.87115 1.22661 0.94809 0.99617 0.99431 1.23162 0.92536 0.94152 0.91064 1.67314 1.41282 0.99334 1.16944 0.91916 0.86120 0.91828 0.83753 0.90064 0.89658 0.88340 0.95435 0.93090 0.91653 0.88187 0.90814 0.89096 0.80638 0.77087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 113.37 1.18 1.59 16 2 O -0.32 -6.20 10.47 -90.04 -0.94 -7.15 16 3 C 0.31 6.35 7.49 84.80 0.63 6.99 16 4 C -0.14 -3.28 9.61 22.76 0.22 -3.07 16 5 C -0.04 -1.01 5.91 -19.91 -0.12 -1.13 16 6 C 0.49 14.84 7.87 70.43 0.55 15.39 16 7 O -0.51 -19.38 16.21 19.99 0.32 -19.06 16 8 O -0.23 -7.19 9.48 -1.82 -0.02 -7.21 16 9 C -0.11 -4.20 5.35 22.14 0.12 -4.08 16 10 C 0.06 2.53 7.23 43.17 0.31 2.84 16 11 C -0.07 -1.90 10.44 71.24 0.74 -1.16 16 12 N -0.32 -15.39 12.57 -47.18 -0.59 -15.98 16 13 N -0.34 -16.50 3.60 -337.93 -1.22 -17.71 16 14 C 0.27 14.50 6.00 85.63 0.51 15.01 16 15 C -0.55 -30.66 9.39 25.60 0.24 -30.42 16 16 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 17 C 0.02 1.19 5.46 84.65 0.46 1.65 16 18 N -0.92 -51.71 13.29 21.45 0.28 -51.43 16 19 Si 0.97 42.38 29.54 68.60 2.03 44.40 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 C 0.10 4.04 6.95 41.44 0.29 4.32 16 24 C -0.08 -2.82 10.09 71.24 0.72 -2.10 16 25 C -0.15 -2.22 9.70 22.64 0.22 -2.00 16 26 C 0.15 1.80 11.17 84.62 0.94 2.74 16 27 N -0.52 -8.99 9.18 -309.16 -2.84 -11.83 16 28 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 29 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.69 8.10 -2.39 -0.02 0.68 16 31 H 0.14 3.53 7.74 -2.91 -0.02 3.51 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 2.69 7.06 -2.39 -0.02 2.68 16 37 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 38 H 0.10 3.09 8.14 -2.39 -0.02 3.08 16 39 H 0.07 2.58 7.09 -2.38 -0.02 2.56 16 40 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 41 H 0.18 2.01 7.71 -2.91 -0.02 1.99 16 42 H 0.21 0.77 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -72.40 375.67 5.11 -67.29 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.05 Total: 12.09 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 7.03 Total: 6.58 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -4.36 Total: -96.95 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.64 Total: -33.41 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -72.40 5.11 -67.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772136178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.841 kcal (2) G-P(sol) polarization free energy of solvation -72.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds