Wall clock time and date at job start Tue Mar 31 2020 15:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30842 * 125.83264 * 2 1 4 4 N 1.40080 * 108.33603 * 180.25921 * 3 2 1 5 5 C 1.46496 * 126.06503 * 179.75839 * 4 3 2 6 6 C 1.50704 * 109.46699 * 269.95521 * 5 4 3 7 7 H 1.07996 * 120.00191 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99718 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00245 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99910 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47332 * 59.99463 * 10 8 6 12 12 H 1.48499 * 109.47236 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46938 * 299.99462 * 10 8 6 14 14 C 1.35794 * 107.86576 * 359.71646 * 4 3 2 15 15 C 1.50705 * 126.20460 * 179.97438 * 14 4 3 16 16 C 1.35638 * 107.58566 * 0.02562 * 14 4 3 17 17 O 1.36187 * 126.06502 * 179.97438 * 16 14 4 18 18 C 1.34785 * 116.99940 * 90.00017 * 17 16 14 19 19 O 1.21588 * 120.00001 * 0.02562 * 18 17 16 20 20 C 1.46922 * 119.99839 * 179.97438 * 18 17 16 21 21 C 1.39419 * 120.59122 * 180.02562 * 20 18 17 22 22 C 1.39436 * 118.95041 * 180.27625 * 21 20 18 23 23 C 1.35778 * 120.13601 * 359.50989 * 22 21 20 24 24 N 1.35427 * 121.25151 * 0.47621 * 23 22 21 25 25 C 1.46497 * 119.47059 * 179.75609 * 24 23 22 26 26 C 1.34652 * 121.05904 * 359.78511 * 24 23 22 27 27 O 1.21880 * 120.10636 * 179.97438 * 26 24 23 28 28 H 1.08992 * 109.47083 * 270.21506 * 1 2 3 29 29 H 1.09003 * 109.46675 * 30.21635 * 1 2 3 30 30 H 1.08996 * 109.47360 * 150.21098 * 1 2 3 31 31 H 1.09000 * 109.47273 * 29.95388 * 5 4 3 32 32 H 1.09001 * 109.47076 * 149.95767 * 5 4 3 33 33 H 0.97001 * 120.00077 * 180.02562 * 9 8 6 34 34 H 1.08992 * 109.47061 * 270.00020 * 15 14 4 35 35 H 1.09000 * 109.47344 * 30.00424 * 15 14 4 36 36 H 1.09003 * 109.46877 * 150.00112 * 15 14 4 37 37 H 1.08002 * 120.52200 * 359.97438 * 21 20 18 38 38 H 1.07993 * 119.93254 * 179.72474 * 22 21 20 39 39 H 1.08006 * 119.37926 * 180.21960 * 23 22 21 40 40 H 1.08994 * 109.47340 * 270.02245 * 25 24 23 41 41 H 1.09002 * 109.46796 * 30.02624 * 25 24 23 42 42 H 1.09007 * 109.46584 * 150.02264 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0608 0.0000 4 7 3.6090 0.6396 -0.0060 5 6 4.7875 1.5098 -0.0130 6 6 5.1852 1.8052 -1.4363 7 1 4.6172 1.3864 -2.2538 8 6 6.2749 2.6094 -1.6948 9 7 6.9670 3.1191 -0.6993 10 14 6.7683 2.9751 -3.4589 11 1 5.6471 3.6553 -4.1557 12 1 7.9629 3.8573 -3.4661 13 1 7.0869 1.7040 -4.1574 14 6 3.6178 -0.7183 -0.0032 15 6 4.8395 -1.6006 -0.0083 16 6 2.3275 -1.1364 0.0037 17 8 1.9041 -2.4308 0.0079 18 6 1.7198 -3.0104 1.2107 19 8 1.9301 -2.3792 2.2284 20 6 1.2635 -4.4047 1.2921 21 6 1.0683 -5.0162 2.5296 22 6 0.6403 -6.3427 2.5670 23 6 0.4100 -7.0175 1.4114 24 7 0.5969 -6.4300 0.2056 25 6 0.3417 -7.1962 -1.0167 26 6 1.0142 -5.1532 0.1121 27 8 1.1772 -4.6419 -0.9822 28 1 -0.3633 0.0039 1.0276 29 1 -0.3633 0.8881 -0.5172 30 1 -0.3634 -0.8918 -0.5105 31 1 4.5535 2.4426 0.5000 32 1 5.6107 1.0106 0.4981 33 1 7.7334 3.6852 -0.8811 34 1 5.1283 -1.8154 -1.0370 35 1 5.6580 -1.0908 0.5000 36 1 4.6159 -2.5338 0.5088 37 1 1.2504 -4.4726 3.4449 38 1 0.4883 -6.8334 3.5169 39 1 0.0753 -8.0434 1.4546 40 1 1.2551 -7.7056 -1.3236 41 1 -0.4391 -7.9328 -0.8273 42 1 0.0191 -6.5201 -1.8085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772136473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:17 Heat of formation + Delta-G solvation = 1.492858 kcal Electronic energy + Delta-G solvation = -28125.030145 eV Core-core repulsion = 24073.264103 eV Total energy + Delta-G solvation = -4051.766042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72398 -40.88298 -39.35081 -37.28923 -36.29042 -34.78249 -33.89123 -32.47546 -30.87193 -30.37316 -28.95378 -28.10759 -26.71576 -25.86936 -25.19870 -23.05956 -22.75549 -21.64035 -19.53577 -19.05189 -18.30611 -17.78900 -17.01014 -16.80589 -16.56386 -16.48267 -15.84848 -15.41484 -14.92208 -14.81148 -14.39762 -14.22992 -13.54112 -13.38718 -13.18074 -13.12424 -12.85900 -12.79910 -12.65868 -12.57032 -12.39874 -12.19812 -11.92581 -11.85519 -11.60033 -11.45667 -10.99708 -10.83394 -10.69528 -10.50616 -10.43586 -10.25540 -10.10226 -9.72638 -9.56128 -8.61243 -8.38234 -8.21726 -7.54837 -6.23299 -4.30905 0.03349 1.51935 2.13920 2.51353 2.52142 2.88703 3.26763 3.29887 3.33559 3.45844 3.50976 3.75244 4.03017 4.14711 4.32671 4.55070 4.65640 4.78299 4.82032 5.00665 5.11431 5.20159 5.26318 5.37905 5.45345 5.54975 5.64782 5.86646 5.87568 6.01618 6.02329 6.07338 6.22585 6.28770 6.39518 6.55971 6.62554 6.81041 7.02673 7.09593 7.39350 7.67867 7.73174 7.89305 7.94739 8.39462 8.56208 8.75586 9.35249 10.84388 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019505 B = 0.002875 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.180251 B = 9736.852037 C =10076.204011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.058 3.942 3 N -0.280 5.280 4 N -0.317 5.317 5 C 0.259 3.741 6 C -0.538 4.538 7 H 0.065 0.935 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.908 3.092 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.102 3.898 15 C -0.082 4.082 16 C -0.099 4.099 17 O -0.223 6.223 18 C 0.506 3.494 19 O -0.502 6.502 20 C -0.254 4.254 21 C 0.064 3.936 22 C -0.249 4.249 23 C 0.170 3.830 24 N -0.500 5.500 25 C 0.055 3.945 26 C 0.523 3.477 27 O -0.501 6.501 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.269 0.731 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.169 0.831 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.900 -25.753 5.902 29.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 N -0.104 5.104 4 N -0.098 5.098 5 C 0.142 3.858 6 C -0.577 4.577 7 H 0.083 0.917 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.734 3.266 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.199 1.199 14 C -0.031 4.031 15 C -0.140 4.140 16 C -0.153 4.153 17 O -0.133 6.133 18 C 0.352 3.648 19 O -0.392 6.392 20 C -0.260 4.260 21 C 0.042 3.958 22 C -0.272 4.272 23 C 0.039 3.961 24 N -0.209 5.209 25 C -0.086 4.086 26 C 0.322 3.678 27 O -0.378 6.378 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.168 0.832 38 H 0.173 0.827 39 H 0.186 0.814 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.386 -23.690 5.414 27.743 hybrid contribution 0.392 -0.655 -0.700 1.035 sum -12.994 -24.344 4.714 27.994 Atomic orbital electron populations 1.20048 0.87392 1.02824 1.02167 1.22234 0.96789 0.89946 1.01845 1.77321 0.87366 1.21647 1.24108 1.49275 1.05951 1.03565 1.51045 1.19757 0.77625 0.89299 0.99127 1.21285 1.13373 1.31796 0.91215 0.91664 1.24924 0.95596 0.94941 0.98244 1.69916 1.19045 1.32743 1.31245 0.86388 0.78005 0.78485 0.83673 1.19897 1.20938 1.19892 1.20995 0.95831 0.86296 0.99969 1.20315 0.93357 0.96902 1.03446 1.17666 0.90589 0.82427 1.24605 1.85021 1.75883 1.23206 1.29224 1.20901 0.74581 0.86192 0.83155 1.90848 1.47968 1.64076 1.36277 1.20155 1.17951 0.94264 0.93602 1.22067 0.83038 0.93135 0.97562 1.20623 1.12752 0.95544 0.98320 1.22276 0.90971 0.98495 0.84349 1.45584 1.53990 1.13515 1.07853 1.22261 1.02949 0.96826 0.86549 1.16987 0.79656 0.80359 0.90749 1.91051 1.51341 1.67586 1.27836 0.91313 0.90920 0.91023 0.92559 0.92792 0.92167 0.89813 0.90382 0.91407 0.83153 0.82656 0.81425 0.90167 0.89437 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.44 36.01 0.38 -0.77 16 2 C 0.06 1.30 7.22 -82.29 -0.59 0.71 16 3 N -0.28 -7.07 12.57 33.73 0.42 -6.65 16 4 N -0.32 -8.13 3.62 -58.03 -0.21 -8.34 16 5 C 0.26 6.99 6.01 -5.19 -0.03 6.96 16 6 C -0.54 -15.38 9.39 -34.44 -0.32 -15.71 16 7 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 8 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 9 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 10 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.10 2.38 6.97 -81.77 -0.57 1.81 16 15 C -0.08 -1.61 10.10 36.01 0.36 -1.24 16 16 C -0.10 -2.26 5.35 -39.79 -0.21 -2.47 16 17 O -0.22 -4.67 8.33 -33.03 -0.28 -4.95 16 18 C 0.51 9.34 7.82 34.25 0.27 9.61 16 19 O -0.50 -10.25 16.16 -19.34 -0.31 -10.56 16 20 C -0.25 -3.49 5.92 -104.52 -0.62 -4.11 16 21 C 0.06 0.59 9.70 -38.70 -0.38 0.22 16 22 C -0.25 -1.25 9.99 -40.02 -0.40 -1.65 16 23 C 0.17 0.69 10.25 -16.85 -0.17 0.52 16 24 N -0.50 -3.85 2.98 -126.74 -0.38 -4.23 16 25 C 0.06 0.26 10.35 59.85 0.62 0.88 16 26 C 0.52 6.89 7.44 -14.90 -0.11 6.78 16 27 O -0.50 -8.63 14.76 -16.44 -0.24 -8.88 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.05 1.44 7.09 -51.93 -0.37 1.07 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.08 1.49 7.12 -51.93 -0.37 1.12 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.15 1.30 7.69 -52.49 -0.40 0.90 16 38 H 0.16 0.27 8.06 -52.49 -0.42 -0.15 16 39 H 0.17 -0.12 8.02 -52.48 -0.42 -0.54 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.09 8.00 -51.93 -0.42 -0.33 16 42 H 0.10 0.67 7.38 -51.92 -0.38 0.29 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -38.56 371.42 -6.85 -45.40 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.29 Total: -2.43 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -1.88 Total: 3.30 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.57 Total: -44.17 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.83 Total: -24.38 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.56 -6.85 -45.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772136473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.897 kcal (2) G-P(sol) polarization free energy of solvation -38.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds