Wall clock time and date at job start Tue Mar 31 2020 16:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28444 * 125.19049 * 2 1 4 4 C 1.30858 * 110.92728 * 179.71228 * 3 2 1 5 5 C 1.39678 * 107.86064 * 0.41500 * 4 3 2 6 6 C 1.50698 * 127.31761 * 179.86597 * 5 4 3 7 7 C 1.53773 * 113.61799 * 59.68173 * 6 5 4 8 8 C 1.53777 * 87.08338 * 220.01867 * 7 6 5 9 9 C 1.53772 * 87.17212 * 25.38874 * 8 7 6 10 10 C 1.36599 * 125.18846 * 179.97438 * 2 1 3 11 11 C 1.47163 * 126.88342 * 0.02562 * 10 2 1 12 12 O 1.21629 * 119.99776 * 90.63923 * 11 10 2 13 13 N 1.34777 * 119.99927 * 270.63716 * 11 10 2 14 14 C 1.46500 * 119.99870 * 184.66933 * 13 11 10 15 15 H 1.08996 * 109.47221 * 34.99448 * 14 13 11 16 16 C 1.50697 * 109.47293 * 154.99977 * 14 13 11 17 17 H 1.08001 * 119.99752 * 359.97438 * 16 14 13 18 18 C 1.37870 * 120.00059 * 179.97438 * 16 14 13 19 19 N 1.31517 * 120.00239 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99942 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47254 * 59.99737 * 20 18 16 22 22 H 1.48501 * 109.46926 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47024 * 299.99442 * 20 18 16 24 24 C 1.53001 * 109.46809 * 274.99661 * 14 13 11 25 25 F 1.39897 * 109.46872 * 60.00241 * 24 14 13 26 26 F 1.39903 * 109.47172 * 179.97438 * 24 14 13 27 27 F 1.39900 * 109.47229 * 300.00097 * 24 14 13 28 28 H 1.08998 * 109.47596 * 274.97512 * 1 2 3 29 29 H 1.08999 * 109.47007 * 34.97146 * 1 2 3 30 30 H 1.08997 * 109.47286 * 154.96746 * 1 2 3 31 31 H 1.07997 * 126.07415 * 180.27341 * 4 3 2 32 32 H 1.09003 * 112.84441 * 190.87740 * 6 5 4 33 33 H 1.08999 * 113.61546 * 105.46717 * 7 6 5 34 34 H 1.08998 * 113.61574 * 334.57213 * 7 6 5 35 35 H 1.08996 * 113.61581 * 139.98307 * 8 7 6 36 36 H 1.09004 * 113.61129 * 270.79663 * 8 7 6 37 37 H 1.09000 * 113.61650 * 89.15787 * 9 8 7 38 38 H 1.09003 * 113.61881 * 220.06286 * 9 8 7 39 39 H 0.96998 * 120.00173 * 4.66497 * 13 11 10 40 40 H 0.96996 * 120.00154 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 0.0061 5 6 3.5612 -0.6667 0.0009 6 6 4.8146 -1.5033 0.0020 7 6 5.7175 -1.2585 1.2225 8 6 6.9123 -1.3544 0.2591 9 6 5.9496 -0.9172 -0.8574 10 6 2.2522 -1.1164 0.0005 11 6 1.7992 -2.5165 0.0006 12 8 1.6236 -3.0989 -1.0527 13 7 1.5790 -3.1535 1.1678 14 6 1.2274 -4.5757 1.1712 15 1 1.7537 -5.0820 0.3621 16 6 1.6244 -5.1882 2.4895 17 1 2.0923 -4.5791 3.2488 18 6 1.3904 -6.5260 2.7264 19 7 0.8202 -7.2677 1.8020 20 14 1.8832 -7.2855 4.3604 21 1 1.1671 -6.5952 5.4631 22 1 1.5267 -8.7270 4.3639 23 1 3.3483 -7.1380 4.5529 24 6 -0.2819 -4.7283 0.9719 25 9 -0.6505 -4.1597 -0.2520 26 9 -0.6177 -6.0864 0.9745 27 9 -0.9575 -4.0784 2.0103 28 1 -0.3634 0.0891 1.0237 29 1 -0.3633 0.8421 -0.5890 30 1 -0.3634 -0.9311 -0.4348 31 1 4.3048 1.4166 0.0117 32 1 4.6197 -2.5579 -0.1924 33 1 5.6844 -2.0620 1.9583 34 1 5.5930 -0.2710 1.6668 35 1 7.6993 -0.6291 0.4660 36 1 7.2931 -2.3682 0.1353 37 1 5.8885 0.1638 -0.9829 38 1 6.1034 -1.4455 -1.7983 39 1 1.6534 -2.6703 2.0055 40 1 0.6552 -8.2088 1.9688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928801095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:11 Heat of formation + Delta-G solvation = -76.000095 kcal Electronic energy + Delta-G solvation = -30012.316144 eV Core-core repulsion = 25415.333016 eV Total energy + Delta-G solvation = -4596.983129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.46790 -46.12506 -45.72015 -42.41412 -38.83540 -38.49140 -34.81309 -33.23243 -32.70816 -31.04364 -28.51798 -27.28869 -25.51147 -25.22512 -24.67707 -23.03897 -21.31188 -21.02968 -19.68749 -18.97084 -18.15006 -17.03223 -16.91387 -16.69453 -16.17875 -16.01371 -15.53381 -15.41648 -15.02720 -14.69435 -14.39396 -13.87184 -13.63194 -13.06832 -13.01181 -12.97604 -12.78900 -12.57836 -12.51592 -12.44500 -12.37208 -12.35669 -12.13918 -12.08144 -11.91511 -11.27942 -10.95810 -10.93052 -10.80495 -10.53395 -10.46394 -10.40093 -10.21510 -9.79994 -9.64685 -9.01688 -8.81411 -8.50723 -8.45198 -6.31945 -4.56905 1.84004 2.34537 2.74545 3.06000 3.15338 3.20761 3.22089 3.64662 4.14176 4.43071 4.49168 4.69919 4.79874 4.84237 4.89319 4.97824 5.09812 5.12539 5.22258 5.40864 5.43210 5.58044 5.69076 5.71393 5.75049 5.79307 5.85262 5.94059 6.00950 6.08207 6.09395 6.36895 6.59474 6.62616 6.76182 6.85536 6.95906 7.34196 7.53822 8.09184 8.17560 8.38117 8.61239 9.11372 10.59552 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.004871 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.921727 B = 5746.349694 C = 7170.926599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.274 5.274 3 N -0.291 5.291 4 C 0.006 3.994 5 C -0.145 4.145 6 C -0.038 4.038 7 C -0.130 4.130 8 C -0.143 4.143 9 C -0.129 4.129 10 C -0.015 4.015 11 C 0.581 3.419 12 O -0.516 6.516 13 N -0.695 5.695 14 C 0.246 3.754 15 H 0.087 0.913 16 C -0.554 4.554 17 H 0.079 0.921 18 C 0.067 3.933 19 N -0.839 5.839 20 Si 0.916 3.084 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.417 3.583 25 F -0.218 7.218 26 F -0.135 7.135 27 F -0.209 7.209 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.181 0.819 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.402 0.598 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.234 11.748 -0.765 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.062 5.062 3 N -0.121 5.121 4 C -0.171 4.171 5 C -0.156 4.156 6 C -0.057 4.057 7 C -0.167 4.167 8 C -0.180 4.180 9 C -0.167 4.167 10 C -0.144 4.144 11 C 0.362 3.638 12 O -0.390 6.390 13 N -0.344 5.344 14 C 0.141 3.859 15 H 0.104 0.896 16 C -0.590 4.590 17 H 0.097 0.903 18 C -0.143 4.143 19 N -0.472 5.472 20 Si 0.742 3.258 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.197 1.197 24 C 0.360 3.640 25 F -0.200 7.200 26 F -0.116 7.116 27 F -0.191 7.191 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.198 0.802 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.236 0.764 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.080 11.990 -1.604 12.766 hybrid contribution 0.256 -0.863 1.153 1.462 sum 4.336 11.127 -0.451 11.951 Atomic orbital electron populations 1.22194 0.73154 1.05513 1.04567 1.45492 1.07333 1.01884 1.51480 1.73086 1.04038 1.13716 1.21257 1.23245 0.93235 0.94127 1.06523 1.20442 0.92267 0.93931 1.08934 1.20893 0.88962 0.98506 0.97384 1.22954 0.95126 1.02291 0.96345 1.22815 0.96568 1.01667 0.96942 1.22972 0.95239 1.00941 0.97538 1.21593 0.91770 0.89209 1.11810 1.17106 0.77893 0.83885 0.84893 1.90864 1.50015 1.66955 1.31122 1.46104 1.68306 1.12317 1.07691 1.19819 0.86031 0.77557 1.02533 0.89557 1.20818 1.44267 0.94969 0.98994 0.90339 1.25071 0.93928 0.96947 0.98323 1.70378 1.36262 1.07390 1.33157 0.86259 0.79202 0.78132 0.82228 1.19774 1.20800 1.19672 1.23138 0.94256 0.75086 0.71474 1.93070 1.93823 1.85910 1.47177 1.93417 1.93527 1.28982 1.95646 1.92993 1.83485 1.82349 1.60239 0.89532 0.88566 0.88577 0.80242 0.88451 0.91064 0.90029 0.91577 0.90142 0.90008 0.91427 0.76388 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 11.22 59.85 0.67 1.72 16 2 N -0.27 -4.19 3.75 -63.88 -0.24 -4.43 16 3 N -0.29 -4.33 11.90 30.59 0.36 -3.97 16 4 C 0.01 0.09 11.24 -17.43 -0.20 -0.11 16 5 C -0.15 -2.17 5.49 -104.02 -0.57 -2.74 16 6 C -0.04 -0.51 4.11 -90.87 -0.37 -0.89 16 7 C -0.13 -1.47 7.63 -25.92 -0.20 -1.67 16 8 C -0.14 -1.41 8.08 -25.93 -0.21 -1.62 16 9 C -0.13 -1.41 7.60 -25.83 -0.20 -1.61 16 10 C -0.01 -0.25 6.71 -82.06 -0.55 -0.80 16 11 C 0.58 11.48 6.28 -12.64 -0.08 11.40 16 12 O -0.52 -12.02 15.48 5.25 0.08 -11.94 16 13 N -0.69 -13.83 4.98 -56.10 -0.28 -14.11 16 14 C 0.25 5.84 2.20 -69.08 -0.15 5.69 16 15 H 0.09 2.29 7.65 -51.93 -0.40 1.89 16 16 C -0.55 -13.57 8.46 -34.44 -0.29 -13.86 16 17 H 0.08 1.82 7.74 -52.49 -0.41 1.41 16 18 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 19 N -0.84 -22.27 9.50 55.43 0.53 -21.74 16 20 Si 0.92 19.51 29.54 -169.99 -5.02 14.49 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C 0.42 10.23 2.81 37.16 0.10 10.33 16 25 F -0.22 -5.26 15.49 2.25 0.03 -5.23 16 26 F -0.13 -3.60 12.91 2.25 0.03 -3.57 16 27 F -0.21 -4.90 16.94 2.25 0.04 -4.87 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.10 1.29 7.65 -51.93 -0.40 0.89 16 31 H 0.18 1.82 7.70 -52.49 -0.40 1.41 16 32 H 0.10 1.52 7.94 -51.93 -0.41 1.11 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.85 8.02 -51.93 -0.42 0.44 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.79 7.22 -51.93 -0.38 0.42 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.40 7.16 8.53 -40.82 -0.35 6.81 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -29.63 348.44 -6.18 -35.81 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.83 Total: 6.87 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -2.13 Total: 7.43 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.37 Total: -44.25 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 9 Polarization: -13.77 SS G_CDS: 0.10 Total: -13.66 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.63 -6.18 -35.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928801095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.194 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds