Wall clock time and date at job start Tue Mar 31 2020 16:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28444 * 125.19049 * 2 1 4 4 C 1.30858 * 110.92728 * 179.71228 * 3 2 1 5 5 C 1.39678 * 107.86064 * 0.41500 * 4 3 2 6 6 C 1.50698 * 127.31761 * 179.86597 * 5 4 3 7 7 C 1.53773 * 113.61799 * 59.68173 * 6 5 4 8 8 C 1.53777 * 87.08338 * 220.01867 * 7 6 5 9 9 C 1.53772 * 87.17212 * 25.38874 * 8 7 6 10 10 C 1.36599 * 125.18846 * 179.97438 * 2 1 3 11 11 C 1.47163 * 126.88342 * 0.02562 * 10 2 1 12 12 O 1.21629 * 119.99776 * 90.63923 * 11 10 2 13 13 N 1.34777 * 119.99927 * 270.63716 * 11 10 2 14 14 C 1.46500 * 119.99870 * 184.66933 * 13 11 10 15 15 H 1.08996 * 109.47221 * 34.99448 * 14 13 11 16 16 C 1.50697 * 109.47293 * 154.99977 * 14 13 11 17 17 H 1.08001 * 119.99752 * 359.97438 * 16 14 13 18 18 C 1.37870 * 120.00059 * 179.97438 * 16 14 13 19 19 N 1.31517 * 120.00239 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99942 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47254 * 59.99737 * 20 18 16 22 22 H 1.48501 * 109.46926 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47024 * 299.99442 * 20 18 16 24 24 C 1.53001 * 109.46809 * 274.99661 * 14 13 11 25 25 F 1.39897 * 109.46872 * 60.00241 * 24 14 13 26 26 F 1.39903 * 109.47172 * 179.97438 * 24 14 13 27 27 F 1.39900 * 109.47229 * 300.00097 * 24 14 13 28 28 H 1.08998 * 109.47596 * 274.97512 * 1 2 3 29 29 H 1.08999 * 109.47007 * 34.97146 * 1 2 3 30 30 H 1.08997 * 109.47286 * 154.96746 * 1 2 3 31 31 H 1.07997 * 126.07415 * 180.27341 * 4 3 2 32 32 H 1.09003 * 112.84441 * 190.87740 * 6 5 4 33 33 H 1.08999 * 113.61546 * 105.46717 * 7 6 5 34 34 H 1.08998 * 113.61574 * 334.57213 * 7 6 5 35 35 H 1.08996 * 113.61581 * 139.98307 * 8 7 6 36 36 H 1.09004 * 113.61129 * 270.79663 * 8 7 6 37 37 H 1.09000 * 113.61650 * 89.15787 * 9 8 7 38 38 H 1.09003 * 113.61881 * 220.06286 * 9 8 7 39 39 H 0.96998 * 120.00173 * 4.66497 * 13 11 10 40 40 H 0.96996 * 120.00154 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 0.0061 5 6 3.5612 -0.6667 0.0009 6 6 4.8146 -1.5033 0.0020 7 6 5.7175 -1.2585 1.2225 8 6 6.9123 -1.3544 0.2591 9 6 5.9496 -0.9172 -0.8574 10 6 2.2522 -1.1164 0.0005 11 6 1.7992 -2.5165 0.0006 12 8 1.6236 -3.0989 -1.0527 13 7 1.5790 -3.1535 1.1678 14 6 1.2274 -4.5757 1.1712 15 1 1.7537 -5.0820 0.3621 16 6 1.6244 -5.1882 2.4895 17 1 2.0923 -4.5791 3.2488 18 6 1.3904 -6.5260 2.7264 19 7 0.8202 -7.2677 1.8020 20 14 1.8832 -7.2855 4.3604 21 1 1.1671 -6.5952 5.4631 22 1 1.5267 -8.7270 4.3639 23 1 3.3483 -7.1380 4.5529 24 6 -0.2819 -4.7283 0.9719 25 9 -0.6505 -4.1597 -0.2520 26 9 -0.6177 -6.0864 0.9745 27 9 -0.9575 -4.0784 2.0103 28 1 -0.3634 0.0891 1.0237 29 1 -0.3633 0.8421 -0.5890 30 1 -0.3634 -0.9311 -0.4348 31 1 4.3048 1.4166 0.0117 32 1 4.6197 -2.5579 -0.1924 33 1 5.6844 -2.0620 1.9583 34 1 5.5930 -0.2710 1.6668 35 1 7.6993 -0.6291 0.4660 36 1 7.2931 -2.3682 0.1353 37 1 5.8885 0.1638 -0.9829 38 1 6.1034 -1.4455 -1.7983 39 1 1.6534 -2.6703 2.0055 40 1 0.6552 -8.2088 1.9688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928801095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:10 Heat of formation + Delta-G solvation = -93.716804 kcal Electronic energy + Delta-G solvation = -30013.084398 eV Core-core repulsion = 25415.333016 eV Total energy + Delta-G solvation = -4597.751383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.47408 -48.10687 -47.77632 -43.57583 -40.49543 -39.42486 -36.63668 -34.57533 -34.28291 -32.36272 -30.24363 -28.37731 -26.66687 -26.39415 -26.23689 -24.60541 -22.83033 -22.27926 -21.21074 -19.92290 -19.63996 -18.96291 -18.80467 -18.60111 -17.83450 -17.41042 -16.81963 -16.72181 -16.50354 -16.11004 -15.62556 -15.25732 -15.18213 -15.01599 -14.72501 -14.52161 -14.35544 -14.28569 -14.08090 -13.98020 -13.91319 -13.74294 -13.45794 -13.21274 -13.12347 -13.05795 -12.83538 -12.64300 -12.27658 -11.86004 -11.67632 -11.52938 -11.31586 -11.26623 -11.13022 -10.71645 -10.27229 -10.17723 -9.63606 -8.24737 -6.56369 0.59895 1.00243 1.46165 1.48083 1.56318 1.65281 1.68612 2.10569 2.35593 2.47250 2.90319 3.43459 3.48559 3.73113 3.76710 3.79507 3.93787 3.96322 4.11570 4.16313 4.20563 4.24597 4.31914 4.47968 4.51965 4.71701 4.80198 4.92082 4.96725 5.05009 5.18141 5.19324 5.20220 5.43878 5.45539 5.50833 5.59532 5.67782 5.75073 6.42189 6.48836 6.97848 7.03829 7.17210 8.67670 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.004871 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.921727 B = 5746.349694 C = 7170.926599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.276 5.276 3 N -0.292 5.292 4 C 0.014 3.986 5 C -0.138 4.138 6 C -0.055 4.055 7 C -0.124 4.124 8 C -0.132 4.132 9 C -0.122 4.122 10 C -0.049 4.049 11 C 0.590 3.410 12 O -0.558 6.558 13 N -0.686 5.686 14 C 0.254 3.746 15 H 0.051 0.949 16 C -0.563 4.563 17 H 0.092 0.908 18 C 0.019 3.981 19 N -0.873 5.873 20 Si 0.981 3.019 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.262 1.262 24 C 0.415 3.585 25 F -0.218 7.218 26 F -0.148 7.148 27 F -0.201 7.201 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.219 0.781 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.413 0.587 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.747 13.950 0.656 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.064 5.064 3 N -0.123 5.123 4 C -0.163 4.163 5 C -0.149 4.149 6 C -0.075 4.075 7 C -0.161 4.161 8 C -0.170 4.170 9 C -0.160 4.160 10 C -0.177 4.177 11 C 0.373 3.627 12 O -0.435 6.435 13 N -0.336 5.336 14 C 0.147 3.853 15 H 0.069 0.931 16 C -0.599 4.599 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.506 5.506 20 Si 0.804 3.196 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.186 1.186 24 C 0.359 3.641 25 F -0.200 7.200 26 F -0.130 7.130 27 F -0.183 7.183 28 H 0.122 0.878 29 H 0.139 0.861 30 H 0.095 0.905 31 H 0.235 0.765 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.250 0.750 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.593 14.226 -0.165 15.287 hybrid contribution -0.228 -1.506 0.654 1.657 sum 5.365 12.721 0.489 13.814 Atomic orbital electron populations 1.22400 0.71925 1.05597 1.06078 1.45711 1.08141 1.01249 1.51337 1.73097 1.04710 1.13368 1.21114 1.23799 0.93691 0.93720 1.05134 1.20756 0.91789 0.94958 1.07398 1.20998 0.89590 0.96744 1.00189 1.22963 0.94938 1.02764 0.95456 1.22771 0.96538 1.02155 0.95511 1.22999 0.93799 1.01935 0.97223 1.21266 0.93125 0.88053 1.15252 1.17416 0.76409 0.84957 0.83880 1.90829 1.51762 1.68397 1.32512 1.45923 1.68159 1.10947 1.08565 1.19426 0.85205 0.79360 1.01286 0.93144 1.21144 1.44132 0.95410 0.99243 0.89015 1.25952 0.93690 0.97419 1.01615 1.70507 1.37451 1.07594 1.35072 0.85244 0.79275 0.77024 0.78049 1.19070 1.20893 1.18623 1.23215 0.94742 0.74553 0.71624 1.93067 1.93855 1.85805 1.47231 1.93388 1.93682 1.30163 1.95735 1.92994 1.83361 1.82094 1.59858 0.87752 0.86080 0.90466 0.76495 0.91825 0.92170 0.88327 0.89124 0.90616 0.87932 0.91969 0.75037 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.87 11.22 127.77 1.43 3.30 16 2 N -0.28 -8.12 3.75 -356.02 -1.33 -9.46 16 3 N -0.29 -8.01 11.90 -57.14 -0.68 -8.69 16 4 C 0.01 0.32 11.24 85.19 0.96 1.28 16 5 C -0.14 -3.96 5.49 -19.48 -0.11 -4.07 16 6 C -0.06 -1.46 4.11 -10.96 -0.05 -1.50 16 7 C -0.12 -2.56 7.63 31.12 0.24 -2.32 16 8 C -0.13 -2.29 8.08 31.12 0.25 -2.04 16 9 C -0.12 -2.40 7.60 31.18 0.24 -2.16 16 10 C -0.05 -1.64 6.71 40.79 0.27 -1.37 16 11 C 0.59 24.09 6.28 86.59 0.54 24.64 16 12 O -0.56 -27.34 15.48 -4.12 -0.06 -27.40 16 13 N -0.69 -27.98 4.98 -449.63 -2.24 -30.22 16 14 C 0.25 12.45 2.20 44.24 0.10 12.55 16 15 H 0.05 2.85 7.65 -2.39 -0.02 2.83 16 16 C -0.56 -27.75 8.46 25.60 0.22 -27.53 16 17 H 0.09 4.18 7.74 -2.91 -0.02 4.16 16 18 C 0.02 0.96 5.20 84.65 0.44 1.40 16 19 N -0.87 -47.28 9.50 21.44 0.20 -47.08 16 20 Si 0.98 39.57 29.54 68.60 2.03 41.60 16 21 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 22 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 C 0.41 20.90 2.81 71.98 0.20 21.10 16 25 F -0.22 -10.86 15.49 44.97 0.70 -10.17 16 26 F -0.15 -8.18 12.91 44.97 0.58 -7.60 16 27 F -0.20 -9.50 16.94 44.97 0.76 -8.74 16 28 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.08 2.10 7.65 -2.39 -0.02 2.08 16 31 H 0.22 3.35 7.70 -2.91 -0.02 3.33 16 32 H 0.06 2.09 7.94 -2.39 -0.02 2.07 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 1.72 8.02 -2.39 -0.02 1.70 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.10 1.60 7.22 -2.39 -0.02 1.58 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.41 14.78 8.53 -92.71 -0.79 13.99 16 40 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -65.03 348.44 5.00 -60.03 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.31 Total: 24.44 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 4.74 Total: 23.27 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -4.05 Total: -95.44 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.06 Total: -27.40 kcal Atomic # 9 Polarization: -28.54 SS G_CDS: 2.04 Total: -26.50 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -65.03 5.00 -60.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928801095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.687 kcal (2) G-P(sol) polarization free energy of solvation -65.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds