Wall clock time and date at job start Tue Mar 31 2020 16:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86803 * 120.00058 * 2 1 4 4 H 1.48499 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47114 * 300.00194 * 3 2 1 6 6 H 1.48496 * 109.46987 * 59.99969 * 3 2 1 7 7 C 1.39888 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99367 * 197.94504 * 7 2 1 9 9 C 1.41212 * 120.00291 * 17.93888 * 7 2 1 10 10 C 1.40835 * 120.17588 * 24.54342 * 9 7 2 11 11 C 1.36436 * 119.80911 * 180.02562 * 10 9 7 12 12 C 1.39306 * 120.18886 * 0.27535 * 11 10 9 13 13 O 1.35675 * 119.82220 * 179.72675 * 12 11 10 14 14 C 1.42902 * 117.00271 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46972 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.46689 * 304.99597 * 15 14 13 17 17 O 1.42893 * 109.47416 * 64.99860 * 15 14 13 18 18 C 1.52997 * 109.46926 * 184.99925 * 15 14 13 19 19 N 1.46903 * 109.47270 * 179.97438 * 18 15 14 20 20 C 1.46894 * 110.99905 * 179.97438 * 19 18 15 21 21 C 1.53007 * 109.46958 * 180.02562 * 20 19 18 22 22 F 1.39898 * 109.46849 * 300.00087 * 21 20 19 23 23 F 1.39897 * 109.46919 * 60.00007 * 21 20 19 24 24 C 1.53004 * 109.46989 * 180.02562 * 21 20 19 25 25 O 1.42892 * 109.47322 * 59.99893 * 24 21 20 26 26 C 1.39314 * 120.36175 * 359.44884 * 12 11 10 27 27 C 1.36442 * 120.18343 * 0.55434 * 26 12 11 28 28 H 0.97005 * 119.99879 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.09372 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.90441 * 180.02562 * 11 10 9 31 31 H 1.08998 * 109.46846 * 299.99854 * 14 13 12 32 32 H 1.08996 * 109.46985 * 59.99934 * 14 13 12 33 33 H 0.96709 * 114.00076 * 59.99302 * 17 15 14 34 34 H 1.09004 * 109.47440 * 300.00110 * 18 15 14 35 35 H 1.09001 * 109.47433 * 59.99620 * 18 15 14 36 36 H 1.00898 * 110.99320 * 303.95259 * 19 18 15 37 37 H 1.09008 * 109.47229 * 299.99919 * 20 19 18 38 38 H 1.09004 * 109.47714 * 60.00050 * 20 19 18 39 39 H 1.08999 * 109.46430 * 180.02562 * 24 21 20 40 40 H 1.09000 * 109.47006 * 299.99444 * 24 21 20 41 41 H 0.96698 * 113.99982 * 179.97438 * 25 24 21 42 42 H 1.08003 * 119.91044 * 180.27846 * 26 12 11 43 43 H 1.08000 * 120.09457 * 179.70827 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8841 2.3965 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0489 -1.2342 0.2876 9 6 1.3538 -2.4045 -0.3777 10 6 0.2247 -2.3573 -1.2182 11 6 -0.4022 -3.5146 -1.5776 12 6 0.0680 -4.7401 -1.1109 13 8 -0.5644 -5.8859 -1.4684 14 6 -0.0316 -7.1085 -0.9550 15 6 -0.8699 -8.2833 -1.4630 16 1 -1.9161 -8.1221 -1.2033 17 8 -0.7412 -8.3816 -2.8827 18 6 -0.3773 -9.5789 -0.8154 19 7 -1.1825 -10.7069 -1.3026 20 6 -0.7365 -11.9706 -0.7011 21 6 -1.5964 -13.1195 -1.2321 22 9 -2.9360 -12.8917 -0.8993 23 9 -1.4676 -13.1941 -2.6231 24 6 -1.1323 -14.4358 -0.6051 25 8 -1.2642 -14.3592 0.8157 26 6 1.1877 -4.7960 -0.2838 27 6 1.8261 -3.6479 0.0850 28 1 -0.4850 0.8401 0.0004 29 1 -0.1437 -1.4078 -1.5773 30 1 -1.2679 -3.4803 -2.2224 31 1 0.9986 -7.2254 -1.2913 32 1 -0.0579 -7.0871 0.1344 33 1 0.1656 -8.5255 -3.1865 34 1 0.6690 -9.7400 -1.0750 35 1 -0.4754 -9.5040 0.2676 36 1 -2.1644 -10.5509 -1.1309 37 1 0.3071 -12.1483 -0.9608 38 1 -0.8364 -11.9125 0.3828 39 1 -1.7446 -15.2542 -0.9837 40 1 -0.0885 -14.6134 -0.8640 41 1 -0.9879 -15.1611 1.2801 42 1 1.5486 -5.7504 0.0702 43 1 2.6911 -3.6926 0.7301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570279708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:15 Heat of formation + Delta-G solvation = -217.996277 kcal Electronic energy + Delta-G solvation = -27293.883223 eV Core-core repulsion = 22781.910232 eV Total energy + Delta-G solvation = -4511.972991 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.29317 -47.30096 -39.11478 -37.96357 -37.58552 -36.26791 -35.40778 -33.31390 -31.58635 -30.20438 -29.44304 -28.93343 -26.68129 -24.84391 -23.88043 -22.23417 -21.80811 -20.68304 -20.56491 -18.78412 -17.64227 -17.42286 -17.33455 -17.07684 -16.88710 -16.39191 -16.11905 -15.27802 -15.20809 -15.10746 -14.83888 -14.21583 -14.05795 -14.00568 -13.91253 -13.63366 -13.59876 -13.49724 -13.12507 -12.80105 -12.49650 -12.27606 -12.21415 -12.13435 -11.76603 -11.40073 -11.23304 -11.16139 -10.94755 -10.92861 -10.77694 -10.61628 -10.00740 -9.88978 -9.81651 -9.33658 -9.02200 -8.86927 -7.64313 -7.03212 -6.72268 -4.25480 2.77024 2.85374 2.95018 3.09035 3.14093 3.20546 3.24012 3.58468 3.76079 3.94730 3.97025 4.18866 4.39069 4.51982 4.58895 4.62098 4.66847 4.87006 4.92519 5.08698 5.15481 5.24289 5.27324 5.38879 5.60901 5.67160 5.99803 6.05405 6.22845 6.37670 6.73079 6.76640 6.87347 6.97742 7.11150 7.18626 7.46462 7.55774 7.76552 7.79133 8.00854 8.20586 8.45357 8.65550 8.90052 8.98810 10.22141 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.038187 B = 0.001689 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.056182 B =16577.556389 C =16864.063182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.133 4.133 11 C -0.119 4.119 12 C -0.009 4.009 13 O -0.317 6.317 14 C 0.039 3.961 15 C 0.114 3.886 16 H 0.104 0.896 17 O -0.538 6.538 18 C 0.032 3.968 19 N -0.676 5.676 20 C 0.022 3.978 21 C 0.299 3.701 22 F -0.193 7.193 23 F -0.182 7.182 24 C 0.039 3.961 25 O -0.558 6.558 26 C -0.169 4.169 27 C -0.199 4.199 28 H 0.280 0.720 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.371 0.629 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.351 0.649 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.393 0.607 42 H 0.092 0.908 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.434 -25.885 0.503 25.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.152 4.152 11 C -0.138 4.138 12 C -0.052 4.052 13 O -0.232 6.232 14 C -0.038 4.038 15 C 0.054 3.946 16 H 0.122 0.878 17 O -0.342 6.342 18 C -0.098 4.098 19 N -0.308 5.308 20 C -0.108 4.108 21 C 0.262 3.738 22 F -0.174 7.174 23 F -0.162 7.162 24 C -0.041 4.041 25 O -0.365 6.365 26 C -0.187 4.187 27 C -0.218 4.218 28 H 0.090 0.910 29 H 0.144 0.856 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.218 0.782 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.170 0.830 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.242 0.758 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.320 -25.122 -0.315 25.159 hybrid contribution 0.932 0.103 1.271 1.579 sum -0.388 -25.020 0.956 25.041 Atomic orbital electron populations 1.69844 1.07512 1.29048 1.36056 1.25885 0.94720 1.01247 0.92389 0.86289 0.80951 0.81109 0.78512 1.18493 1.19728 1.20094 1.19485 0.98097 0.91235 1.40493 0.90528 1.17605 0.91872 0.92135 0.89902 1.20987 0.98470 0.96318 0.99468 1.19849 1.00900 0.90231 1.02790 1.18620 0.96853 0.84844 1.04879 1.85889 1.54472 1.12049 1.70827 1.23086 0.97159 0.85193 0.98390 1.21828 1.00850 0.89952 0.81938 0.87793 1.86646 1.32858 1.95059 1.19670 1.22589 0.98631 0.90719 0.97829 1.60252 1.08627 1.00596 1.61290 1.22897 0.99858 0.89095 0.98955 1.20888 0.79483 0.96258 0.77199 1.93029 1.36467 1.95733 1.92175 1.93069 1.95778 1.97156 1.30241 1.22966 1.02234 0.95597 0.83259 1.86444 1.89845 1.43639 1.16586 1.20390 0.97904 0.97704 1.02737 1.20553 1.03208 0.92514 1.05566 0.90960 0.85643 0.88399 0.92833 0.92506 0.78209 0.90037 0.93559 0.82994 0.88159 0.91158 0.90807 0.90134 0.75784 0.88980 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.81 10.96 55.54 0.61 -20.20 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.34 9.04 -37.84 -0.34 -12.68 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 9 C 0.09 2.34 5.57 -106.81 -0.60 1.75 16 10 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 11 C -0.12 -2.93 9.92 -39.83 -0.40 -3.33 16 12 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 13 O -0.32 -6.55 10.09 -23.58 -0.24 -6.79 16 14 C 0.04 0.59 4.37 37.16 0.16 0.76 16 15 C 0.11 1.45 3.45 -26.73 -0.09 1.35 16 16 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 17 O -0.54 -7.58 13.17 -40.08 -0.53 -8.11 16 18 C 0.03 0.30 5.35 -3.82 -0.02 0.28 16 19 N -0.68 -6.71 6.29 -113.77 -0.72 -7.42 16 20 C 0.02 0.18 5.08 -3.82 -0.02 0.16 16 21 C 0.30 2.52 2.01 -26.73 -0.05 2.47 16 22 F -0.19 -2.08 16.48 2.25 0.04 -2.04 16 23 F -0.18 -1.87 16.98 2.25 0.04 -1.83 16 24 C 0.04 0.20 6.69 37.16 0.25 0.44 16 25 O -0.56 -2.91 12.93 -35.23 -0.46 -3.36 16 26 C -0.17 -3.80 8.96 -39.83 -0.36 -4.16 16 27 C -0.20 -4.89 9.74 -39.25 -0.38 -5.27 16 28 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 29 H 0.13 3.39 6.16 -52.49 -0.32 3.06 16 30 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 31 H 0.05 0.76 7.63 -51.93 -0.40 0.36 16 32 H 0.06 0.82 7.66 -51.93 -0.40 0.43 16 33 H 0.37 4.02 9.05 45.56 0.41 4.43 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.35 3.66 8.26 -39.29 -0.32 3.34 16 37 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.07 0.55 7.68 -51.93 -0.40 0.15 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.39 0.11 9.12 45.56 0.42 0.53 16 42 H 0.09 1.77 6.27 -52.48 -0.33 1.44 16 43 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -32.72 371.48 -7.49 -40.21 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -4.27 Total: 10.98 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -2.54 Total: -20.76 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: -0.11 Total: -27.62 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -1.22 Total: -18.26 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.08 Total: -3.87 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.72 -7.49 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570279708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.783 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds