Wall clock time and date at job start Tue Mar 31 2020 16:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00056 * 2 1 4 4 H 1.48503 * 109.47147 * 269.99884 * 3 2 1 5 5 H 1.48506 * 109.46996 * 29.99777 * 3 2 1 6 6 H 1.48503 * 109.47405 * 149.99706 * 3 2 1 7 7 C 1.37881 * 120.00202 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.84549 * 0.02562 * 7 2 1 9 9 C 1.53231 * 108.53697 * 231.32100 * 8 7 2 10 10 C 1.52957 * 109.40698 * 305.37808 * 9 8 7 11 11 H 1.08996 * 109.41052 * 303.55963 * 10 9 8 12 12 N 1.46498 * 109.41455 * 183.69859 * 10 9 8 13 13 C 1.34777 * 119.99828 * 154.72075 * 12 10 9 14 14 O 1.21373 * 120.00280 * 0.28141 * 13 12 10 15 15 C 1.49091 * 120.00000 * 180.27623 * 13 12 10 16 16 O 1.20773 * 120.00106 * 0.02562 * 15 13 12 17 17 C 1.50701 * 119.99951 * 179.97438 * 15 13 12 18 18 H 1.08997 * 109.47208 * 320.00549 * 17 15 13 19 19 O 1.42893 * 109.47287 * 199.99916 * 17 15 13 20 20 C 1.53001 * 109.46743 * 80.00109 * 17 15 13 21 21 H 1.09003 * 109.47315 * 60.00142 * 20 17 15 22 22 O 1.42896 * 109.47418 * 300.00096 * 20 17 15 23 23 C 1.53000 * 109.47162 * 179.97438 * 20 17 15 24 24 H 1.09005 * 109.46810 * 60.00817 * 23 20 17 25 25 O 1.42896 * 109.47359 * 300.00532 * 23 20 17 26 26 C 1.53003 * 109.47475 * 180.02562 * 23 20 17 27 27 O 1.42897 * 109.47253 * 185.00406 * 26 23 20 28 28 C 1.52961 * 109.81613 * 63.59529 * 10 9 8 29 29 C 1.51259 * 120.85278 * 179.97438 * 7 2 1 30 30 H 0.96994 * 120.00088 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.62758 * 111.61490 * 8 7 2 32 32 H 1.08997 * 109.63299 * 351.03866 * 8 7 2 33 33 H 1.09001 * 109.48639 * 185.39175 * 9 8 7 34 34 H 1.09006 * 109.49158 * 65.36526 * 9 8 7 35 35 H 0.97001 * 120.00384 * 335.00522 * 12 10 9 36 36 H 0.96701 * 114.00349 * 300.00840 * 19 17 15 37 37 H 0.96701 * 114.00046 * 299.99603 * 22 20 17 38 38 H 0.96701 * 114.00046 * 300.00022 * 25 23 20 39 39 H 1.09009 * 109.46893 * 305.00510 * 26 23 20 40 40 H 1.08999 * 109.47145 * 65.00142 * 26 23 20 41 41 H 0.96705 * 113.99689 * 180.02562 * 27 26 23 42 42 H 1.08997 * 109.48300 * 56.38010 * 28 10 9 43 43 H 1.09004 * 109.47761 * 176.42528 * 28 10 9 44 44 H 1.09006 * 109.62791 * 248.39095 * 29 7 2 45 45 H 1.09008 * 109.62700 * 8.76854 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8229 -3.3826 1.1351 10 6 3.3399 -3.5070 0.9841 11 1 3.5739 -3.9111 -0.0008 12 7 3.8598 -4.4075 2.0161 13 6 5.0144 -5.0718 1.8113 14 8 5.6262 -4.9201 0.7740 15 6 5.5404 -5.9929 2.8590 16 8 4.9316 -6.1442 3.8910 17 6 6.8312 -6.7361 2.6298 18 1 6.8750 -7.0778 1.5957 19 8 6.8945 -7.8625 3.5068 20 6 8.0124 -5.8049 2.9097 21 1 7.9687 -5.4631 3.9438 22 8 7.9492 -4.6784 2.0327 23 6 9.3230 -6.5596 2.6776 24 1 9.3671 -6.9015 1.6435 25 8 9.3860 -7.6858 3.5549 26 6 10.5043 -5.6285 2.9581 27 8 11.7248 -6.2955 2.6301 28 6 3.9906 -2.1310 1.1352 29 6 3.5170 -1.2165 0.0000 30 1 -0.4850 0.8400 0.0004 31 1 1.4200 -3.0193 -0.9538 32 1 0.2036 -2.3409 0.1600 33 1 1.3706 -4.3733 1.0900 34 1 1.5897 -2.9199 2.0942 35 1 3.3709 -4.5288 2.8451 36 1 6.8603 -7.6326 4.4455 37 1 7.9834 -4.9083 1.0941 38 1 9.3516 -7.4556 4.4935 39 1 10.4085 -4.7274 2.3523 40 1 10.5107 -5.3576 4.0139 41 1 12.5174 -5.7632 2.7836 42 1 3.7062 -1.6977 2.0941 43 1 5.0748 -2.2347 1.0901 44 1 3.8771 -1.6007 -0.9545 45 1 3.8982 -0.2072 0.1557 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144902607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:16 Heat of formation + Delta-G solvation = -275.912356 kcal Electronic energy + Delta-G solvation = -29752.167464 eV Core-core repulsion = 25348.770559 eV Total energy + Delta-G solvation = -4403.396905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.10058 -39.43267 -38.71359 -37.14797 -36.82130 -36.24590 -35.88296 -33.83229 -31.64233 -30.71751 -29.74968 -29.28601 -27.61118 -25.62156 -23.51226 -22.30373 -21.84528 -21.51975 -20.00419 -19.59546 -18.30751 -18.06161 -17.78525 -17.28869 -17.18025 -16.69775 -16.11108 -15.76188 -15.46065 -15.32009 -14.51165 -14.42295 -14.34089 -13.92935 -13.77365 -13.69183 -13.31006 -13.23074 -13.19295 -12.80700 -12.62735 -12.38259 -12.17614 -12.07878 -11.73190 -11.49274 -11.09450 -11.02746 -10.91520 -10.88778 -10.78335 -10.52824 -10.25921 -10.07991 -9.99946 -9.62503 -9.34988 -9.09236 -8.91904 -8.55082 -8.43094 -6.15359 -4.06758 0.77167 2.67535 2.96878 3.24508 3.32915 3.33501 3.35140 3.67930 3.97378 4.12122 4.17916 4.25035 4.34126 4.39803 4.56325 4.62657 4.68953 4.77807 5.09606 5.12078 5.12980 5.56020 5.58982 5.76914 6.07859 6.27842 6.39821 6.50917 6.60284 6.64237 6.80742 6.87899 7.01692 7.04568 7.12878 7.14530 7.21729 7.28611 7.36474 7.55587 7.59011 7.65150 7.77918 8.13750 8.31919 8.90609 9.49170 10.94053 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.002768 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.967599 B =10112.425733 C =11133.953795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.490 4.490 8 C 0.013 3.987 9 C -0.116 4.116 10 C 0.151 3.849 11 H 0.083 0.917 12 N -0.693 5.693 13 C 0.478 3.522 14 O -0.511 6.511 15 C 0.330 3.670 16 O -0.417 6.417 17 C 0.053 3.947 18 H 0.140 0.860 19 O -0.517 6.517 20 C 0.059 3.941 21 H 0.105 0.895 22 O -0.537 6.537 23 C 0.087 3.913 24 H 0.111 0.889 25 O -0.529 6.529 26 C 0.045 3.955 27 O -0.565 6.565 28 C -0.112 4.112 29 C -0.018 4.018 30 H 0.265 0.735 31 H 0.007 0.993 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.403 0.597 36 H 0.378 0.622 37 H 0.392 0.608 38 H 0.369 0.631 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.380 0.620 42 H 0.051 0.949 43 H 0.040 0.960 44 H 0.020 0.980 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.496 -11.394 8.620 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.509 4.509 8 C -0.024 4.024 9 C -0.154 4.154 10 C 0.049 3.951 11 H 0.101 0.899 12 N -0.344 5.344 13 C 0.259 3.741 14 O -0.388 6.388 15 C 0.200 3.800 16 O -0.286 6.286 17 C -0.008 4.008 18 H 0.158 0.842 19 O -0.321 6.321 20 C -0.002 4.002 21 H 0.122 0.878 22 O -0.345 6.345 23 C 0.027 3.973 24 H 0.129 0.871 25 O -0.333 6.333 26 C -0.033 4.033 27 O -0.371 6.371 28 C -0.151 4.151 29 C -0.056 4.056 30 H 0.075 0.925 31 H 0.025 0.975 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.226 0.774 37 H 0.243 0.757 38 H 0.215 0.785 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.227 0.773 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.026 -12.053 7.706 22.238 hybrid contribution 0.430 1.792 1.137 2.165 sum 17.455 -10.261 8.843 22.095 Atomic orbital electron populations 1.69827 1.06156 1.27023 1.49710 1.24849 0.94724 0.98629 0.94440 0.86671 0.79973 0.83198 0.78581 1.20336 1.21655 1.18937 1.20046 0.89405 0.91441 1.50028 1.19343 0.98809 0.92753 0.91544 1.21970 0.91959 0.98860 1.02654 1.21256 0.94871 0.89017 0.89971 0.89890 1.46461 1.22517 1.43609 1.21858 1.20447 0.82794 0.82545 0.88277 1.90670 1.57139 1.64233 1.26762 1.25883 0.87825 0.79853 0.86480 1.90415 1.56595 1.55033 1.26585 1.22835 0.91430 0.88046 0.98530 0.84242 1.86779 1.95860 1.29338 1.20136 1.23161 0.93166 0.87218 0.96684 0.87770 1.86650 1.96249 1.30198 1.21381 1.22534 0.91054 0.86791 0.96933 0.87131 1.86767 1.96234 1.31134 1.19188 1.22852 0.85381 0.95525 0.99526 1.86526 1.15726 1.45076 1.89746 1.21900 0.97392 0.94736 1.01066 1.19790 0.96569 0.95507 0.93717 0.92532 0.97456 0.91952 0.94456 0.92532 0.76298 0.77397 0.75731 0.78480 0.91567 0.93413 0.77332 0.92992 0.94153 0.96210 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 12.73 55.43 0.71 -24.30 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.89 20.67 27.53 -169.99 -4.68 15.99 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.26 -5.96 6.11 56.52 0.35 -5.61 16 7 C -0.49 -12.53 5.51 -98.93 -0.55 -13.07 16 8 C 0.01 0.32 5.97 -27.49 -0.16 0.16 16 9 C -0.12 -2.30 5.40 -26.63 -0.14 -2.45 16 10 C 0.15 2.82 2.35 -67.97 -0.16 2.66 16 11 H 0.08 1.67 7.57 -51.93 -0.39 1.27 16 12 N -0.69 -10.83 5.07 -54.40 -0.28 -11.10 16 13 C 0.48 7.01 7.41 -11.75 -0.09 6.92 16 14 O -0.51 -8.20 14.16 -13.18 -0.19 -8.38 16 15 C 0.33 3.95 6.34 -29.80 -0.19 3.76 16 16 O -0.42 -5.37 16.44 -13.14 -0.22 -5.59 16 17 C 0.05 0.50 2.83 -27.88 -0.08 0.42 16 18 H 0.14 1.31 8.01 -51.93 -0.42 0.89 16 19 O -0.52 -4.75 11.12 -65.27 -0.73 -5.48 16 20 C 0.06 0.46 2.57 -26.73 -0.07 0.39 16 21 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 22 O -0.54 -5.24 10.76 -53.89 -0.58 -5.82 16 23 C 0.09 0.67 3.02 -26.73 -0.08 0.59 16 24 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 25 O -0.53 -4.43 11.31 -61.12 -0.69 -5.12 16 26 C 0.05 0.32 6.60 37.16 0.25 0.56 16 27 O -0.57 -4.61 13.62 -40.11 -0.55 -5.16 16 28 C -0.11 -2.26 5.51 -26.61 -0.15 -2.41 16 29 C -0.02 -0.41 5.60 -27.46 -0.15 -0.56 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.40 5.70 8.07 -40.82 -0.33 5.37 16 36 H 0.38 2.35 8.65 45.56 0.39 2.75 16 37 H 0.39 3.35 8.12 45.56 0.37 3.72 16 38 H 0.37 1.68 9.04 45.56 0.41 2.09 16 39 H 0.07 0.46 7.54 -51.92 -0.39 0.06 16 40 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.38 1.40 9.12 45.56 0.42 1.81 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.04 0.84 4.59 -51.92 -0.24 0.60 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -32.71 367.01 -6.87 -39.59 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -3.54 Total: 10.93 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.67 Total: -1.09 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.43 Total: -35.40 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -2.95 Total: -35.55 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.68 Total: 15.99 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.71 -6.87 -39.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144902607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.325 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds