Wall clock time and date at job start Tue Mar 31 2020 16:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00119 * 2 1 4 4 H 1.48501 * 109.46827 * 269.99790 * 3 2 1 5 5 H 1.48492 * 109.47288 * 29.99494 * 3 2 1 6 6 H 1.48496 * 109.47052 * 149.99768 * 3 2 1 7 7 C 1.38814 * 119.99449 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00202 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99377 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99862 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47517 * 34.99221 * 10 9 7 12 12 C 1.53006 * 109.46862 * 275.00112 * 10 9 7 13 13 O 1.42904 * 109.46680 * 294.99497 * 12 10 9 14 14 C 1.52996 * 109.47417 * 154.99958 * 10 9 7 15 15 N 1.46499 * 109.46937 * 304.99760 * 14 10 9 16 16 C 1.34782 * 119.99799 * 180.02562 * 15 14 10 17 17 O 1.21574 * 120.00191 * 359.97438 * 16 15 14 18 18 C 1.47662 * 119.99842 * 180.02562 * 16 15 14 19 19 C 1.40230 * 120.49962 * 179.97438 * 18 16 15 20 20 C 1.38017 * 118.36104 * 179.97438 * 19 18 16 21 21 C 1.39159 * 119.25179 * 0.02562 * 20 19 18 22 22 N 1.39494 * 119.52634 * 179.97438 * 21 20 19 23 23 C 1.37227 * 126.49963 * 185.28061 * 22 21 20 24 24 C 1.34587 * 106.82957 * 180.12607 * 23 22 21 25 25 N 1.34178 * 108.22997 * 359.61530 * 24 23 22 26 26 C 1.30446 * 109.38896 * 0.24560 * 25 24 23 27 27 N 1.32424 * 120.94657 * 0.25179 * 21 20 19 28 28 C 1.31643 * 121.79829 * 359.47407 * 27 21 20 29 29 H 0.97001 * 119.99667 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00450 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47275 * 54.99994 * 12 10 9 32 32 H 1.09001 * 109.46871 * 175.00307 * 12 10 9 33 33 H 0.96708 * 113.99582 * 180.02562 * 13 12 10 34 34 H 1.09007 * 109.47228 * 185.00095 * 14 10 9 35 35 H 1.09000 * 109.47482 * 65.00029 * 14 10 9 36 36 H 0.96999 * 119.99997 * 359.97438 * 15 14 10 37 37 H 1.08001 * 120.82073 * 359.95962 * 19 18 16 38 38 H 1.07999 * 120.37601 * 179.97438 * 20 19 18 39 39 H 1.08008 * 126.58634 * 359.97438 * 23 22 21 40 40 H 1.08002 * 125.88803 * 179.88796 * 24 23 22 41 41 H 1.08008 * 125.72631 * 179.97438 * 26 25 24 42 42 H 1.08005 * 119.67744 * 180.24559 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4709 0.0011 11 1 3.5649 -3.2065 -0.5886 12 6 4.2576 -2.9758 1.4381 13 8 5.0736 -2.0681 2.1814 14 6 5.4995 -2.2589 -0.6080 15 7 5.3624 -1.6636 -1.9395 16 6 6.4607 -1.3863 -2.6700 17 8 7.5650 -1.6298 -2.2237 18 6 6.3226 -0.7857 -4.0118 19 6 7.4581 -0.4925 -4.7806 20 6 7.2779 0.0678 -6.0290 21 6 5.9863 0.3219 -6.4803 22 7 5.7975 0.8886 -7.7409 23 6 4.6034 1.2907 -8.2845 24 6 4.8766 1.7739 -9.5106 25 7 6.1997 1.6808 -9.7133 26 6 6.7627 1.1525 -8.6619 27 7 4.9340 0.0385 -5.7279 28 6 5.0601 -0.5011 -4.5338 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3622 0.0014 31 1 3.2731 -3.0423 1.9013 32 1 4.7234 -3.9612 1.4316 33 1 5.2093 -2.3261 3.1035 34 1 6.0109 -3.2181 -0.6897 35 1 6.0785 -1.5917 0.0305 36 1 4.4813 -1.4696 -2.2957 37 1 8.4493 -0.6997 -4.4050 38 1 8.1297 0.3071 -6.6483 39 1 3.6308 1.2287 -7.8190 40 1 4.1557 2.1725 -10.2091 41 1 7.8183 0.9572 -8.5428 42 1 4.1781 -0.7218 -3.9509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283786310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:58 Heat of formation + Delta-G solvation = 46.071443 kcal Electronic energy + Delta-G solvation = -27313.359787 eV Core-core repulsion = 23295.819569 eV Total energy + Delta-G solvation = -4017.540218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.69294 -40.77538 -39.18773 -37.35341 -35.18504 -34.61568 -33.77228 -33.06562 -31.75373 -30.67757 -29.73245 -28.85570 -25.98089 -24.68845 -24.15183 -23.34720 -21.87527 -21.23850 -20.55459 -20.25498 -19.22219 -18.33604 -17.50042 -17.04951 -16.91897 -16.12275 -15.75668 -15.57990 -15.31876 -15.00196 -14.58517 -14.28228 -14.20809 -14.10572 -13.98007 -13.68019 -13.54781 -13.41694 -13.22242 -12.95703 -12.91813 -12.48218 -11.71560 -11.14173 -11.05516 -10.96160 -10.82446 -10.51848 -10.44613 -10.43816 -10.18627 -9.86457 -9.72727 -9.54864 -9.22458 -9.09741 -8.94972 -8.78392 -7.44685 -5.90955 -3.28335 -0.03045 0.70783 1.71588 2.04148 2.72919 2.80860 3.13102 3.28563 3.36831 3.39206 3.50664 3.76878 4.07515 4.28205 4.36843 4.40792 4.47819 4.63389 4.73360 4.80714 5.03085 5.09616 5.11208 5.21422 5.26496 5.38062 5.43611 5.59222 5.70385 5.79613 5.80608 5.83547 5.90754 6.08149 6.28442 6.33072 6.48551 6.56345 6.72091 7.28131 7.54540 7.61278 7.81782 8.02930 8.16751 8.27753 9.05026 9.77511 9.96807 11.26456 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.003163 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.253146 B = 8850.640782 C =10553.288493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.013 3.987 3 Si 0.877 3.123 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.254 4.254 8 H 0.091 0.909 9 N -0.739 5.739 10 C 0.171 3.829 11 H 0.076 0.924 12 C 0.059 3.941 13 O -0.565 6.565 14 C 0.115 3.885 15 N -0.709 5.709 16 C 0.561 3.439 17 O -0.541 6.541 18 C -0.193 4.193 19 C 0.011 3.989 20 C -0.189 4.189 21 C 0.363 3.637 22 N -0.413 5.413 23 C -0.020 4.020 24 C -0.032 4.032 25 N -0.478 5.478 26 C 0.193 3.807 27 N -0.497 5.497 28 C 0.175 3.825 29 H 0.261 0.739 30 H 0.366 0.634 31 H 0.055 0.945 32 H 0.031 0.969 33 H 0.367 0.633 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.408 0.592 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.185 0.815 40 H 0.178 0.822 41 H 0.213 0.787 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.998 -2.887 -11.074 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.184 4.184 3 Si 0.707 3.293 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.383 4.383 8 H 0.109 0.891 9 N -0.382 5.382 10 C 0.060 3.940 11 H 0.094 0.906 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.009 4.009 15 N -0.360 5.360 16 C 0.346 3.654 17 O -0.420 6.420 18 C -0.199 4.199 19 C -0.016 4.016 20 C -0.211 4.211 21 C 0.135 3.865 22 N -0.096 5.096 23 C -0.150 4.150 24 C -0.176 4.176 25 N -0.194 5.194 26 C -0.089 4.089 27 N -0.208 5.208 28 C 0.016 3.984 29 H 0.071 0.929 30 H 0.199 0.801 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.212 0.788 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.245 0.755 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.202 0.798 40 H 0.195 0.805 41 H 0.229 0.771 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 14.052 -2.390 -12.330 18.847 hybrid contribution 0.223 0.605 1.603 1.728 sum 14.275 -1.784 -10.727 17.945 Atomic orbital electron populations 1.69694 1.05126 1.26058 1.56577 1.24638 0.95129 0.97151 1.01438 0.86657 0.79637 0.85074 0.77901 1.21025 1.21659 1.19937 1.19033 0.80338 0.94722 1.44252 0.89076 1.42761 1.03932 1.01746 1.89795 1.20589 0.90307 0.90687 0.92418 0.90597 1.22991 0.93957 0.90428 0.94848 1.86519 1.72346 1.52007 1.26026 1.21689 0.98708 0.98571 0.81947 1.45972 1.09114 1.62630 1.18310 1.17807 0.84867 0.78644 0.84074 1.90775 1.25534 1.53818 1.71896 1.21128 0.95126 1.06162 0.97449 1.21597 0.99856 0.89330 0.90793 1.21519 0.95953 1.05261 0.98412 1.18394 0.90310 0.92794 0.85008 1.43154 1.09393 1.45474 1.11536 1.23071 0.90875 1.04674 0.96339 1.22435 0.92833 1.06034 0.96253 1.70328 1.07890 1.17334 1.23869 1.25381 0.96252 1.02434 0.84788 1.67044 1.32171 1.14688 1.06906 1.23007 0.96977 0.89227 0.89211 0.92886 0.80099 0.92684 0.95049 0.78787 0.91240 0.90224 0.75461 0.82255 0.83238 0.79766 0.80510 0.77076 0.80627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.53 13.97 55.49 0.78 -26.75 16 2 C 0.01 0.36 5.50 -17.43 -0.10 0.27 16 3 Si 0.88 21.18 27.74 -169.99 -4.71 16.46 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.27 -6.46 6.52 56.52 0.37 -6.09 16 7 C -0.25 -6.45 10.41 -15.06 -0.16 -6.61 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 9 N -0.74 -15.56 4.31 -53.43 -0.23 -15.79 16 10 C 0.17 2.84 2.84 -67.93 -0.19 2.65 16 11 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 12 C 0.06 0.91 6.86 37.16 0.25 1.16 16 13 O -0.57 -8.89 12.64 -35.23 -0.45 -9.34 16 14 C 0.11 1.74 5.12 -4.04 -0.02 1.72 16 15 N -0.71 -10.17 5.34 -61.31 -0.33 -10.50 16 16 C 0.56 8.05 7.77 -12.41 -0.10 7.95 16 17 O -0.54 -9.13 16.41 5.30 0.09 -9.04 16 18 C -0.19 -2.32 5.89 -104.81 -0.62 -2.93 16 19 C 0.01 0.11 9.70 -38.91 -0.38 -0.27 16 20 C -0.19 -1.64 9.48 -39.32 -0.37 -2.01 16 21 C 0.36 4.03 7.49 -154.51 -1.16 2.88 16 22 N -0.41 -4.46 2.98 -63.81 -0.19 -4.65 16 23 C -0.02 -0.22 11.16 -16.43 -0.18 -0.40 16 24 C -0.03 -0.33 11.85 -17.82 -0.21 -0.54 16 25 N -0.48 -5.52 11.24 -14.45 -0.16 -5.68 16 26 C 0.19 1.83 11.88 -89.54 -1.06 0.77 16 27 N -0.50 -6.28 9.87 -11.99 -0.12 -6.40 16 28 C 0.18 2.12 10.71 -17.14 -0.18 1.94 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.37 8.03 5.66 -40.82 -0.23 7.80 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.37 4.04 9.12 45.56 0.42 4.46 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.36 7.39 -51.93 -0.38 0.98 16 36 H 0.41 5.70 6.19 -40.82 -0.25 5.44 16 37 H 0.16 1.37 7.73 -52.49 -0.41 0.96 16 38 H 0.15 0.77 6.75 -52.49 -0.35 0.41 16 39 H 0.19 1.82 8.06 -52.48 -0.42 1.40 16 40 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.21 1.12 7.05 -52.48 -0.37 0.75 16 42 H 0.18 1.99 6.41 -52.48 -0.34 1.65 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -34.74 363.19 -8.37 -43.11 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -4.04 Total: 16.54 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -4.48 Total: 6.56 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -0.25 Total: -69.77 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.36 Total: -18.38 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.74 -8.37 -43.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283786310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.185 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds