Wall clock time and date at job start Tue Mar 31 2020 16:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.86832 * 2 1 4 4 C 1.54323 * 109.88328 * 121.16909 * 2 1 3 5 5 H 1.08993 * 110.72345 * 259.98306 * 4 2 1 6 6 N 1.46510 * 110.71644 * 23.24992 * 4 2 1 7 7 C 1.36932 * 119.99834 * 204.99345 * 6 4 2 8 8 H 1.07998 * 120.00064 * 0.02562 * 7 6 4 9 9 C 1.38814 * 119.99816 * 180.02562 * 7 6 4 10 10 N 1.31618 * 120.00296 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99726 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47061 * 60.00463 * 11 9 7 13 13 H 1.48500 * 109.46799 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47454 * 300.00052 * 11 9 7 15 15 C 1.55152 * 102.93946 * 141.61069 * 4 2 1 16 16 C 1.55125 * 101.48831 * 324.33598 * 15 4 2 17 17 N 1.47014 * 109.88416 * 238.98279 * 2 1 3 18 18 C 1.34780 * 125.65097 * 61.60466 * 17 2 1 19 19 O 1.21279 * 119.99706 * 359.97438 * 18 17 2 20 20 C 1.50702 * 120.00020 * 179.97438 * 18 17 2 21 21 N 1.46501 * 109.46782 * 179.97438 * 20 18 17 22 22 C 1.47061 * 126.30188 * 275.02686 * 21 20 18 23 23 C 1.54067 * 110.10530 * 209.01172 * 22 21 20 24 24 C 1.55607 * 104.29520 * 314.79345 * 23 22 21 25 25 S 1.67009 * 126.30073 * 95.00152 * 21 20 18 26 26 O 1.42102 * 105.13051 * 61.09055 * 25 21 20 27 27 O 1.42098 * 105.12969 * 291.42008 * 25 21 20 28 28 H 1.08997 * 109.46676 * 179.56179 * 1 2 3 29 29 H 1.09000 * 109.47361 * 299.56326 * 1 2 3 30 30 H 1.08998 * 109.47067 * 59.56574 * 1 2 3 31 31 H 0.96999 * 119.99804 * 25.00496 * 6 4 2 32 32 H 0.96999 * 120.00122 * 179.97438 * 10 9 7 33 33 H 1.09005 * 111.00243 * 82.58087 * 15 4 2 34 34 H 1.09008 * 111.00630 * 206.38817 * 15 4 2 35 35 H 1.09002 * 110.49579 * 278.44964 * 16 15 4 36 36 H 1.09007 * 110.34019 * 156.05768 * 16 15 4 37 37 H 1.08997 * 109.46961 * 59.99946 * 20 18 17 38 38 H 1.09001 * 109.46945 * 299.99738 * 20 18 17 39 39 H 1.08993 * 109.35890 * 88.83233 * 22 21 20 40 40 H 1.09001 * 109.35419 * 329.18390 * 22 21 20 41 41 H 1.09001 * 110.46494 * 196.08976 * 23 22 21 42 42 H 1.09000 * 110.46971 * 73.49777 * 23 22 21 43 43 H 1.09001 * 111.16600 * 155.78748 * 24 23 22 44 44 H 1.09000 * 111.16490 * 280.01002 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7511 1.2417 5 1 2.3528 -0.0487 2.0200 6 7 1.0472 -1.6878 1.7452 7 6 1.0607 -2.0659 3.0612 8 1 1.8139 -1.6732 3.7281 9 6 0.1062 -2.9538 3.5381 10 7 -0.8115 -3.4328 2.7252 11 14 0.1242 -3.4690 5.3336 12 1 -0.0396 -2.2699 6.1942 13 1 -0.9901 -4.4171 5.5877 14 1 1.4168 -4.1298 5.6461 15 6 3.2876 -1.5150 0.6904 16 6 2.8100 -1.8814 -0.7393 17 7 2.0301 -0.7124 -1.1848 18 6 1.8075 -0.3587 -2.4662 19 8 1.1429 0.6243 -2.7172 20 6 2.3844 -1.1846 -3.5870 21 7 2.0021 -0.5969 -4.8733 22 6 0.7470 -0.8364 -5.6014 23 6 0.9761 -0.6815 -7.1170 24 6 1.8172 0.6212 -7.2473 25 16 2.9112 0.4690 -5.7826 26 8 4.1025 -0.2374 -6.1008 27 8 2.9338 1.6736 -5.0292 28 1 -0.3632 -1.0276 -0.0079 29 1 -0.3634 0.5070 0.8939 30 1 -0.3633 0.5206 -0.8860 31 1 0.3705 -2.0403 1.1462 32 1 -1.4783 -4.0535 3.0584 33 1 4.1655 -0.8696 0.6593 34 1 3.4857 -2.4123 1.2768 35 1 2.1803 -2.7708 -0.7151 36 1 3.6657 -2.0392 -1.3959 37 1 1.9990 -2.2022 -3.5240 38 1 3.4711 -1.2017 -3.5035 39 1 -0.0035 -0.1170 -5.2740 40 1 0.3943 -1.8460 -5.3907 41 1 0.0243 -0.5742 -7.6373 42 1 1.5312 -1.5342 -7.5078 43 1 2.3951 0.6257 -8.1714 44 1 1.1851 1.5065 -7.1770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986328708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:30 Heat of formation + Delta-G solvation = -63.461212 kcal Electronic energy + Delta-G solvation = -27567.986440 eV Core-core repulsion = 23648.847729 eV Total energy + Delta-G solvation = -3919.138710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.140 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -39.94231 -37.91629 -37.20297 -36.88336 -35.99118 -33.97733 -33.36501 -31.59649 -30.74898 -29.17181 -27.67941 -25.91789 -25.19299 -23.55461 -22.62736 -22.17921 -20.02295 -19.03627 -18.51772 -17.56260 -17.42977 -17.24800 -16.68513 -15.94067 -15.88205 -15.34119 -14.80880 -14.65333 -14.48227 -14.08812 -13.87416 -13.67838 -13.52178 -13.22840 -13.08440 -12.66756 -12.55412 -12.25616 -12.23074 -12.07535 -12.02650 -11.90311 -11.60295 -11.29845 -11.25394 -10.98855 -10.92349 -10.80721 -10.75520 -10.61452 -10.25084 -10.09471 -9.95183 -9.61582 -8.96508 -8.93518 -8.25644 -7.04016 -5.83182 -3.12407 -0.03431 2.20926 2.87885 3.25150 3.39347 3.40538 3.45718 3.46047 3.57356 3.97679 4.18060 4.53651 4.56223 4.57657 4.66684 4.96891 5.03592 5.08996 5.16980 5.19808 5.28958 5.33816 5.46392 5.51754 5.60412 5.61810 5.65527 5.77587 5.87142 6.00570 6.10682 6.20288 6.36929 6.44166 6.54487 6.64593 6.75506 6.90610 7.04005 7.65047 7.88614 8.35282 8.46857 9.47012 10.02317 10.37611 11.39030 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028556 B = 0.002754 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.300646 B =10165.721520 C =10395.626176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.126 3.874 3 H 0.070 0.930 4 C 0.172 3.828 5 H 0.070 0.930 6 N -0.713 5.713 7 C -0.243 4.243 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.932 5.932 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.286 1.286 15 C -0.159 4.159 16 C 0.101 3.899 17 N -0.610 5.610 18 C 0.499 3.501 19 O -0.524 6.524 20 C 0.145 3.855 21 N -0.974 5.974 22 C 0.079 3.921 23 C -0.123 4.123 24 C -0.599 4.599 25 S 2.569 3.431 26 O -0.961 6.961 27 O -0.940 6.940 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.388 0.612 32 H 0.256 0.744 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.139 0.861 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 3.807 -20.982 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.023 3.977 3 H 0.088 0.912 4 C 0.059 3.941 5 H 0.088 0.912 6 N -0.355 5.355 7 C -0.374 4.374 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.218 1.218 14 H -0.213 1.213 15 C -0.201 4.201 16 C -0.022 4.022 17 N -0.345 5.345 18 C 0.284 3.716 19 O -0.400 6.400 20 C 0.017 3.983 21 N -0.814 5.814 22 C -0.047 4.047 23 C -0.162 4.162 24 C -0.729 4.729 25 S 2.665 3.335 26 O -0.950 6.950 27 O -0.929 6.929 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.225 0.775 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.112 0.888 43 H 0.157 0.843 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.010 4.696 -20.688 22.049 hybrid contribution -0.865 -0.758 0.522 1.263 sum 5.145 3.938 -20.166 21.181 Atomic orbital electron populations 1.21902 0.94327 1.02776 1.01535 1.22005 0.95389 0.95701 0.84647 0.91209 1.21193 0.89089 0.91603 0.92174 0.91227 1.42545 1.32709 1.51369 1.08920 1.19203 1.10824 1.21181 0.86231 0.91089 1.24735 0.97908 1.00092 0.97884 1.69646 1.18470 1.35511 1.34301 0.86266 0.76939 0.78052 0.84878 1.21250 1.21768 1.21269 1.23551 0.99301 1.02369 0.94860 1.22400 0.94473 0.88755 0.96552 1.48703 1.52404 1.28509 1.04902 1.20843 0.81782 0.86160 0.82795 1.90689 1.39242 1.26953 1.83078 1.20818 1.00635 0.97160 0.79684 1.56743 1.30547 1.64767 1.29342 1.22085 0.87920 1.05069 0.89591 1.22636 1.02758 0.95002 0.95825 1.30851 1.15727 1.06678 1.19679 1.06509 0.74799 0.74769 0.77452 1.93611 1.43877 1.72885 1.84646 1.93671 1.85912 1.46383 1.66912 0.91657 0.91630 0.92831 0.77546 0.93401 0.91947 0.89416 0.90830 0.91706 0.87261 0.87623 0.90081 0.88844 0.87130 0.88779 0.84300 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.51 37.16 0.32 -2.49 16 2 C 0.13 2.26 3.43 -66.95 -0.23 2.03 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.17 3.22 3.48 -66.09 -0.23 2.99 16 5 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 6 N -0.71 -16.59 4.54 -51.65 -0.23 -16.83 16 7 C -0.24 -6.36 9.96 -15.06 -0.15 -6.51 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -26.95 13.06 55.49 0.72 -26.23 16 11 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 C -0.16 -2.52 6.78 -24.47 -0.17 -2.69 16 16 C 0.10 1.44 6.68 -2.41 -0.02 1.42 16 17 N -0.61 -9.81 3.06 -162.88 -0.50 -10.30 16 18 C 0.50 7.99 7.71 -10.98 -0.08 7.90 16 19 O -0.52 -10.08 15.47 5.56 0.09 -9.99 16 20 C 0.15 1.71 5.83 -5.19 -0.03 1.68 16 21 N -0.97 -10.65 2.80 -114.63 -0.32 -10.97 16 22 C 0.08 0.61 6.82 -3.18 -0.02 0.59 16 23 C -0.12 -0.59 6.79 -24.79 -0.17 -0.76 16 24 C -0.60 -3.50 7.51 38.54 0.29 -3.21 16 25 S 2.57 28.47 6.18 -107.50 -0.66 27.81 16 26 O -0.96 -12.82 18.14 -57.41 -1.04 -13.86 16 27 O -0.94 -14.81 18.13 -57.41 -1.04 -15.85 16 28 H 0.06 1.36 6.20 -51.93 -0.32 1.04 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.05 1.02 6.88 -51.93 -0.36 0.67 16 31 H 0.39 9.67 5.67 -40.82 -0.23 9.44 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.50 8.14 -51.92 -0.42 1.07 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.72 7.48 -51.93 -0.39 0.33 16 37 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.11 1.10 7.85 -51.93 -0.41 0.69 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -36.54 367.28 -9.81 -46.36 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.75 Total: 7.14 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.59 Total: 0.59 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -0.33 Total: -64.33 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -2.00 Total: -39.71 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 28.47 SS G_CDS: -0.66 Total: 27.81 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.54 -9.81 -46.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986328708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.106 kcal (2) G-P(sol) polarization free energy of solvation -36.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds