Wall clock time and date at job start Tue Mar 31 2020 16:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99899 * 2 1 4 4 H 1.48501 * 109.47218 * 270.00242 * 3 2 1 5 5 H 1.48500 * 109.46763 * 30.00030 * 3 2 1 6 6 H 1.48500 * 109.47232 * 150.00206 * 3 2 1 7 7 C 1.38954 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99757 * 0.02562 * 7 2 1 9 9 N 1.37096 * 120.00069 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00182 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99615 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99901 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47038 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00253 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47137 * 325.00415 * 14 13 12 16 16 C 1.53002 * 109.47035 * 85.00235 * 14 13 12 17 17 O 1.42905 * 109.47079 * 64.99813 * 16 14 13 18 18 C 1.53001 * 109.47067 * 204.99968 * 14 13 12 19 19 N 1.46493 * 109.47037 * 55.00445 * 18 14 13 20 20 C 1.34783 * 120.00039 * 179.97438 * 19 18 14 21 21 O 1.21283 * 119.99828 * 359.97438 * 20 19 18 22 22 C 1.50698 * 120.00313 * 180.02562 * 20 19 18 23 23 H 1.08999 * 109.52032 * 304.99637 * 22 20 19 24 24 C 1.53146 * 109.52446 * 65.12586 * 22 20 19 25 25 O 1.43087 * 109.14074 * 175.14536 * 24 22 20 26 26 C 1.43070 * 113.65653 * 302.15298 * 25 24 22 27 27 C 1.53147 * 109.15127 * 57.91299 * 26 25 24 28 28 O 1.43064 * 109.52683 * 184.86742 * 22 20 19 29 29 H 0.96998 * 120.00467 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00319 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47334 * 60.00368 * 12 10 9 32 32 H 1.08998 * 109.47444 * 299.99481 * 12 10 9 33 33 H 1.00905 * 110.99897 * 303.95653 * 13 12 10 34 34 H 1.09004 * 109.46930 * 305.00039 * 16 14 13 35 35 H 1.09000 * 109.47312 * 184.99983 * 16 14 13 36 36 H 0.96705 * 113.99788 * 180.02562 * 17 16 14 37 37 H 1.09009 * 109.46801 * 175.00499 * 18 14 13 38 38 H 1.08999 * 109.47476 * 295.00018 * 18 14 13 39 39 H 0.97000 * 120.00338 * 359.97438 * 19 18 14 40 40 H 1.09002 * 109.52588 * 295.11947 * 24 22 20 41 41 H 1.08995 * 109.52630 * 55.31762 * 24 22 20 42 42 H 1.09004 * 109.52290 * 298.01939 * 26 25 24 43 43 H 1.08998 * 109.53122 * 177.81807 * 26 25 24 44 44 H 1.08992 * 109.52657 * 184.78887 * 27 26 25 45 45 H 1.09004 * 109.57438 * 64.62419 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0014 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0021 11 8 3.4474 -3.4209 -0.0021 12 6 5.5608 -2.3704 -0.0021 13 7 6.0505 -3.7554 -0.0027 14 6 7.5190 -3.7945 -0.0034 15 1 7.9044 -2.9625 -0.5926 16 6 8.0328 -3.6829 1.4335 17 8 7.6241 -4.8334 2.1762 18 6 7.9937 -5.1148 -0.6136 19 7 7.4045 -5.2772 -1.9450 20 6 7.6840 -6.3742 -2.6764 21 8 8.4236 -7.2268 -2.2324 22 6 7.0784 -6.5410 -4.0462 23 1 5.9936 -6.4603 -3.9771 24 6 7.6144 -5.4511 -4.9790 25 8 7.1239 -5.6836 -6.3029 26 6 7.4753 -6.9672 -6.8281 27 6 6.9380 -8.0561 -5.8949 28 8 7.4298 -7.8246 -4.5714 29 1 -0.4851 0.8400 -0.0004 30 1 3.8649 -0.3633 -0.0007 31 1 5.9241 -1.8574 0.8883 32 1 5.9241 -1.8558 -0.8916 33 1 5.6750 -4.2720 0.7784 34 1 7.6220 -2.7862 1.8976 35 1 9.1211 -3.6226 1.4266 36 1 7.9153 -4.8301 3.0984 37 1 9.0806 -5.1071 -0.6957 38 1 7.6834 -5.9424 0.0244 39 1 6.8133 -4.5952 -2.3002 40 1 7.2771 -4.4750 -4.6304 41 1 8.7040 -5.4802 -4.9849 42 1 8.5602 -7.0484 -6.8960 43 1 7.0372 -7.0878 -7.8189 44 1 7.2744 -9.0327 -6.2429 45 1 5.8484 -8.0270 -5.8889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283737158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:59 Heat of formation + Delta-G solvation = -195.113194 kcal Electronic energy + Delta-G solvation = -28906.239519 eV Core-core repulsion = 24538.639079 eV Total energy + Delta-G solvation = -4367.600440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.167 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.64448 -39.30341 -38.63153 -37.77134 -36.28987 -35.51574 -34.23308 -33.75940 -32.13472 -31.70354 -30.22677 -28.47696 -26.41481 -26.05443 -24.92988 -23.76704 -22.11838 -21.03351 -20.44589 -19.47367 -18.52648 -17.85485 -17.64850 -17.26729 -16.76882 -16.41042 -16.19144 -15.73222 -15.70039 -15.43224 -15.15335 -14.96910 -14.80290 -14.27501 -14.22810 -13.96161 -13.73693 -13.47535 -13.15501 -13.09204 -12.67712 -12.53670 -12.35919 -12.15961 -11.93319 -11.81097 -11.75589 -11.40914 -11.20959 -11.12618 -10.90193 -10.64470 -10.28456 -10.01707 -9.84482 -9.61836 -9.48362 -9.05249 -8.67634 -8.28083 -8.21673 -6.34985 -3.86759 2.48489 2.67726 2.97358 3.02406 3.11199 3.34295 3.67591 3.68613 3.83754 4.05678 4.16996 4.21055 4.52219 4.60528 4.61587 4.65514 4.77618 4.79810 4.84783 4.93054 5.07753 5.11713 5.13602 5.18995 5.24451 5.32084 5.40532 5.43904 5.51368 5.59148 5.73940 5.83799 5.96411 6.36545 6.57768 6.63284 6.95224 7.35074 7.48732 7.50632 7.53899 8.10192 8.16403 8.55042 8.90931 9.37811 9.77593 10.78112 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.002903 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.032833 B = 9644.536336 C =11468.508798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.562 6.562 12 C 0.044 3.956 13 N -0.660 5.660 14 C 0.075 3.925 15 H 0.095 0.905 16 C 0.046 3.954 17 O -0.565 6.565 18 C 0.139 3.861 19 N -0.708 5.708 20 C 0.522 3.478 21 O -0.525 6.525 22 C 0.036 3.964 23 H 0.099 0.901 24 C 0.039 3.961 25 O -0.372 6.372 26 C 0.021 3.979 27 C 0.022 3.978 28 O -0.351 6.351 29 H 0.274 0.726 30 H 0.370 0.630 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.365 0.635 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.381 0.619 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.409 0.591 40 H 0.113 0.887 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.570 -6.076 -6.609 22.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.234 3.766 11 O -0.443 6.443 12 C -0.088 4.088 13 N -0.294 5.294 14 C -0.037 4.037 15 H 0.113 0.887 16 C -0.034 4.034 17 O -0.370 6.370 18 C 0.015 3.985 19 N -0.362 5.362 20 C 0.306 3.694 21 O -0.401 6.401 22 C -0.025 4.025 23 H 0.117 0.883 24 C -0.038 4.038 25 O -0.291 6.291 26 C -0.056 4.056 27 C -0.055 4.055 28 O -0.269 6.269 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.187 0.813 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.245 0.755 40 H 0.131 0.869 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.144 -7.528 -7.533 22.786 hybrid contribution 0.647 2.279 1.321 2.712 sum 20.791 -5.249 -6.212 22.325 Atomic orbital electron populations 1.69619 1.05660 1.27535 1.49210 1.25047 0.95487 0.97980 0.97640 0.86665 0.79684 0.84062 0.78886 1.19577 1.20211 1.19605 1.19431 0.79221 0.96639 1.48146 0.86272 1.42203 1.07541 1.06117 1.67078 1.19660 0.88094 0.84605 0.84244 1.90591 1.69341 1.30876 1.53529 1.21796 0.95370 0.90493 1.01170 1.60130 1.04351 1.12438 1.52498 1.21999 0.89815 0.98265 0.93578 0.88672 1.22832 0.98612 0.88539 0.93401 1.86502 1.80240 1.43079 1.27181 1.21223 0.96725 0.97782 0.82806 1.45692 1.50242 1.22529 1.17704 1.19820 0.81628 0.82084 0.85870 1.90718 1.36201 1.41305 1.71839 1.22595 1.00970 0.86341 0.92624 0.88331 1.23143 0.99352 0.98542 0.82800 1.88139 1.77359 1.34137 1.29418 1.23317 1.00583 0.83610 0.98078 1.23352 0.99556 0.99765 0.82797 1.88215 1.76996 1.31833 1.29901 0.91573 0.79749 0.93776 0.89446 0.81266 0.93016 0.93005 0.77164 0.91433 0.90093 0.75479 0.86920 0.91545 0.91921 0.87416 0.87242 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.35 13.96 55.50 0.77 -24.57 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 18.78 27.74 -169.99 -4.71 14.07 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.19 6.52 56.52 0.37 -4.83 16 7 C -0.31 -8.44 10.16 -14.93 -0.15 -8.59 16 8 H 0.12 3.79 7.39 -52.48 -0.39 3.41 16 9 N -0.59 -13.41 5.09 -10.96 -0.06 -13.46 16 10 C 0.45 9.58 7.82 -10.99 -0.09 9.49 16 11 O -0.56 -14.55 15.78 5.54 0.09 -14.46 16 12 C 0.04 0.64 5.96 -4.98 -0.03 0.61 16 13 N -0.66 -9.02 5.31 -108.00 -0.57 -9.59 16 14 C 0.07 0.74 2.57 -67.71 -0.17 0.57 16 15 H 0.10 0.75 7.80 -51.93 -0.40 0.35 16 16 C 0.05 0.39 6.72 37.16 0.25 0.64 16 17 O -0.56 -5.54 12.05 -35.23 -0.42 -5.96 16 18 C 0.14 1.57 5.26 -4.05 -0.02 1.54 16 19 N -0.71 -8.20 5.35 -60.29 -0.32 -8.52 16 20 C 0.52 7.13 7.18 -10.98 -0.08 7.05 16 21 O -0.53 -9.23 16.51 -14.26 -0.24 -9.47 16 22 C 0.04 0.43 3.25 -27.81 -0.09 0.34 16 23 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 24 C 0.04 0.38 6.30 37.23 0.23 0.61 16 25 O -0.37 -3.92 10.84 -48.81 -0.53 -4.45 16 26 C 0.02 0.17 7.05 37.23 0.26 0.43 16 27 C 0.02 0.20 7.05 37.23 0.26 0.46 16 28 O -0.35 -4.56 10.03 -62.51 -0.63 -5.18 16 29 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.37 7.30 5.76 -40.82 -0.24 7.07 16 31 H 0.04 0.56 7.36 -51.93 -0.38 0.18 16 32 H 0.09 1.05 8.05 -51.93 -0.42 0.64 16 33 H 0.37 5.86 7.64 -39.29 -0.30 5.56 16 34 H 0.05 0.43 7.35 -51.93 -0.38 0.05 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 2.12 9.12 45.56 0.42 2.54 16 37 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.08 1.12 7.39 -51.93 -0.38 0.74 16 39 H 0.41 4.32 8.06 -40.82 -0.33 3.99 16 40 H 0.11 0.89 8.06 -51.93 -0.42 0.47 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -37.26 375.67 -6.46 -43.71 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -5.78 Total: 18.04 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 0.28 Total: 14.19 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.18 Total: -56.15 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -1.73 Total: -39.52 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.71 Total: 14.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.26 -6.46 -43.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283737158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.398 kcal (2) G-P(sol) polarization free energy of solvation -37.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds