Wall clock time and date at job start Tue Mar 31 2020 16:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99899 * 2 1 4 4 H 1.48501 * 109.47218 * 270.00242 * 3 2 1 5 5 H 1.48500 * 109.46763 * 30.00030 * 3 2 1 6 6 H 1.48500 * 109.47232 * 150.00206 * 3 2 1 7 7 C 1.38954 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99757 * 0.02562 * 7 2 1 9 9 N 1.37096 * 120.00069 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00182 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99615 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99901 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47038 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00253 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47137 * 325.00415 * 14 13 12 16 16 C 1.53002 * 109.47035 * 85.00235 * 14 13 12 17 17 O 1.42905 * 109.47079 * 64.99813 * 16 14 13 18 18 C 1.53001 * 109.47067 * 204.99968 * 14 13 12 19 19 N 1.46493 * 109.47037 * 55.00445 * 18 14 13 20 20 C 1.34783 * 120.00039 * 179.97438 * 19 18 14 21 21 O 1.21283 * 119.99828 * 359.97438 * 20 19 18 22 22 C 1.50698 * 120.00313 * 180.02562 * 20 19 18 23 23 H 1.08999 * 109.52032 * 304.99637 * 22 20 19 24 24 C 1.53146 * 109.52446 * 65.12586 * 22 20 19 25 25 O 1.43087 * 109.14074 * 175.14536 * 24 22 20 26 26 C 1.43070 * 113.65653 * 302.15298 * 25 24 22 27 27 C 1.53147 * 109.15127 * 57.91299 * 26 25 24 28 28 O 1.43064 * 109.52683 * 184.86742 * 22 20 19 29 29 H 0.96998 * 120.00467 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00319 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47334 * 60.00368 * 12 10 9 32 32 H 1.08998 * 109.47444 * 299.99481 * 12 10 9 33 33 H 1.00905 * 110.99897 * 303.95653 * 13 12 10 34 34 H 1.09004 * 109.46930 * 305.00039 * 16 14 13 35 35 H 1.09000 * 109.47312 * 184.99983 * 16 14 13 36 36 H 0.96705 * 113.99788 * 180.02562 * 17 16 14 37 37 H 1.09009 * 109.46801 * 175.00499 * 18 14 13 38 38 H 1.08999 * 109.47476 * 295.00018 * 18 14 13 39 39 H 0.97000 * 120.00338 * 359.97438 * 19 18 14 40 40 H 1.09002 * 109.52588 * 295.11947 * 24 22 20 41 41 H 1.08995 * 109.52630 * 55.31762 * 24 22 20 42 42 H 1.09004 * 109.52290 * 298.01939 * 26 25 24 43 43 H 1.08998 * 109.53122 * 177.81807 * 26 25 24 44 44 H 1.08992 * 109.52657 * 184.78887 * 27 26 25 45 45 H 1.09004 * 109.57438 * 64.62419 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0014 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0021 11 8 3.4474 -3.4209 -0.0021 12 6 5.5608 -2.3704 -0.0021 13 7 6.0505 -3.7554 -0.0027 14 6 7.5190 -3.7945 -0.0034 15 1 7.9044 -2.9625 -0.5926 16 6 8.0328 -3.6829 1.4335 17 8 7.6241 -4.8334 2.1762 18 6 7.9937 -5.1148 -0.6136 19 7 7.4045 -5.2772 -1.9450 20 6 7.6840 -6.3742 -2.6764 21 8 8.4236 -7.2268 -2.2324 22 6 7.0784 -6.5410 -4.0462 23 1 5.9936 -6.4603 -3.9771 24 6 7.6144 -5.4511 -4.9790 25 8 7.1239 -5.6836 -6.3029 26 6 7.4753 -6.9672 -6.8281 27 6 6.9380 -8.0561 -5.8949 28 8 7.4298 -7.8246 -4.5714 29 1 -0.4851 0.8400 -0.0004 30 1 3.8649 -0.3633 -0.0007 31 1 5.9241 -1.8574 0.8883 32 1 5.9241 -1.8558 -0.8916 33 1 5.6750 -4.2720 0.7784 34 1 7.6220 -2.7862 1.8976 35 1 9.1211 -3.6226 1.4266 36 1 7.9153 -4.8301 3.0984 37 1 9.0806 -5.1071 -0.6957 38 1 7.6834 -5.9424 0.0244 39 1 6.8133 -4.5952 -2.3002 40 1 7.2771 -4.4750 -4.6304 41 1 8.7040 -5.4802 -4.9849 42 1 8.5602 -7.0484 -6.8960 43 1 7.0372 -7.0878 -7.8189 44 1 7.2744 -9.0327 -6.2429 45 1 5.8484 -8.0270 -5.8889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283737158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:58 Heat of formation + Delta-G solvation = -231.172143 kcal Electronic energy + Delta-G solvation = -28907.803153 eV Core-core repulsion = 24538.639079 eV Total energy + Delta-G solvation = -4369.164073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54580 -40.43585 -39.97401 -38.81426 -37.11063 -36.43657 -35.96279 -35.02443 -33.71976 -32.94750 -31.19454 -29.28848 -27.91644 -26.83984 -25.76080 -25.34007 -22.87988 -21.89892 -21.39056 -21.26249 -20.29832 -18.82961 -18.43371 -18.14120 -17.68936 -17.60128 -17.03786 -16.94419 -16.68926 -16.57086 -16.37184 -16.02063 -15.89433 -15.53353 -15.21825 -15.05554 -14.85600 -14.61454 -14.41421 -14.21667 -14.05163 -13.96306 -13.36391 -13.28136 -12.97358 -12.90732 -12.64654 -12.57822 -12.38895 -12.24660 -11.95977 -11.93658 -11.63659 -11.48249 -10.94695 -10.85221 -10.40899 -10.30964 -10.22005 -10.05752 -9.32945 -8.38849 -5.99895 1.31776 1.38477 1.44058 1.47003 1.78340 2.00577 2.25584 2.63585 2.69288 2.91461 3.17895 3.26606 3.42777 3.63557 3.67917 3.83051 3.83993 3.95566 4.07703 4.11964 4.20932 4.24360 4.37839 4.42547 4.46430 4.51889 4.57803 4.62030 4.71061 4.76678 4.78398 4.79874 5.01924 5.40156 5.55311 5.83182 5.88280 5.93337 6.06931 6.32678 6.51429 6.62635 6.91458 6.91967 7.15974 7.43557 8.01513 8.79059 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.002903 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.032833 B = 9644.536336 C =11468.508798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.018 4.018 3 Si 0.967 3.033 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.227 1.227 7 C -0.327 4.327 8 H 0.052 0.948 9 N -0.591 5.591 10 C 0.448 3.552 11 O -0.616 6.616 12 C 0.060 3.940 13 N -0.676 5.676 14 C 0.080 3.920 15 H 0.129 0.871 16 C 0.047 3.953 17 O -0.592 6.592 18 C 0.140 3.860 19 N -0.696 5.696 20 C 0.519 3.481 21 O -0.572 6.572 22 C 0.037 3.963 23 H 0.098 0.902 24 C 0.045 3.955 25 O -0.387 6.387 26 C 0.019 3.981 27 C 0.016 3.984 28 O -0.383 6.383 29 H 0.278 0.722 30 H 0.390 0.610 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.349 0.651 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.397 0.603 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.416 0.584 40 H 0.132 0.868 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.889 -3.254 -7.232 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.216 4.216 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.150 1.150 7 C -0.457 4.457 8 H 0.070 0.930 9 N -0.233 5.233 10 C 0.236 3.764 11 O -0.500 6.500 12 C -0.072 4.072 13 N -0.309 5.309 14 C -0.030 4.030 15 H 0.147 0.853 16 C -0.033 4.033 17 O -0.400 6.400 18 C 0.016 3.984 19 N -0.349 5.349 20 C 0.304 3.696 21 O -0.451 6.451 22 C -0.025 4.025 23 H 0.116 0.884 24 C -0.032 4.032 25 O -0.306 6.306 26 C -0.057 4.057 27 C -0.060 4.060 28 O -0.302 6.302 29 H 0.088 0.912 30 H 0.226 0.774 31 H 0.096 0.904 32 H 0.145 0.855 33 H 0.168 0.832 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.247 0.753 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.253 0.747 40 H 0.149 0.851 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.151 0.849 44 H 0.148 0.852 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.497 -4.683 -8.155 25.309 hybrid contribution -0.441 1.202 1.513 1.982 sum 23.056 -3.481 -6.642 24.245 Atomic orbital electron populations 1.69816 1.08307 1.29214 1.50522 1.26158 0.96449 1.02864 0.96123 0.85335 0.79516 0.76473 0.79962 1.18057 1.20492 1.15040 1.18988 0.81725 0.94759 1.50214 0.92973 1.42013 1.05628 1.07700 1.67933 1.21076 0.91215 0.83167 0.80960 1.90576 1.71516 1.32927 1.54974 1.21747 0.89237 0.91680 1.04513 1.60084 1.06837 1.11908 1.52083 1.22117 0.87342 0.98309 0.95265 0.85287 1.22884 1.00107 0.88291 0.92028 1.86476 1.80834 1.44020 1.28697 1.21240 0.97413 0.97734 0.82016 1.45674 1.49614 1.21977 1.17590 1.20218 0.80969 0.81804 0.86561 1.90688 1.38480 1.42926 1.72974 1.22624 1.00722 0.87004 0.92121 0.88407 1.23167 0.99412 0.98437 0.82210 1.88116 1.77675 1.35304 1.29492 1.23498 1.01146 0.82303 0.98771 1.23611 0.99734 1.01263 0.81413 1.88170 1.77575 1.32513 1.31927 0.91240 0.77392 0.90446 0.85532 0.83154 0.92105 0.90460 0.75319 0.90134 0.93241 0.74651 0.85053 0.91288 0.91387 0.84928 0.85239 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.99 13.96 21.66 0.30 -55.68 16 2 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 3 Si 0.97 37.20 27.74 68.60 1.90 39.11 16 4 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 5 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.23 -7.10 6.52 99.48 0.65 -6.45 16 7 C -0.33 -18.70 10.16 84.04 0.85 -17.85 16 8 H 0.05 3.60 7.39 -2.91 -0.02 3.58 16 9 N -0.59 -26.19 5.09 -306.98 -1.56 -27.75 16 10 C 0.45 18.72 7.82 87.66 0.69 19.41 16 11 O -0.62 -32.93 15.78 -3.08 -0.05 -32.98 16 12 C 0.06 1.51 5.96 85.56 0.51 2.02 16 13 N -0.68 -16.96 5.31 -495.59 -2.63 -19.60 16 14 C 0.08 1.31 2.57 44.92 0.12 1.43 16 15 H 0.13 1.31 7.80 -2.39 -0.02 1.29 16 16 C 0.05 0.63 6.72 71.98 0.48 1.11 16 17 O -0.59 -10.71 12.05 -148.98 -1.80 -12.51 16 18 C 0.14 2.96 5.26 86.38 0.45 3.41 16 19 N -0.70 -15.36 5.35 -463.06 -2.48 -17.84 16 20 C 0.52 14.19 7.18 87.66 0.63 14.82 16 21 O -0.57 -20.57 16.51 15.91 0.26 -20.31 16 22 C 0.04 0.86 3.25 29.90 0.10 0.96 16 23 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 24 C 0.05 0.81 6.30 72.03 0.45 1.27 16 25 O -0.39 -7.54 10.84 -136.00 -1.47 -9.01 16 26 C 0.02 0.28 7.05 72.03 0.51 0.78 16 27 C 0.02 0.27 7.05 72.03 0.51 0.78 16 28 O -0.38 -9.98 10.03 -122.90 -1.23 -11.21 16 29 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.39 13.93 5.76 -92.71 -0.53 13.40 16 31 H 0.08 1.52 7.36 -2.39 -0.02 1.50 16 32 H 0.13 2.29 8.05 -2.39 -0.02 2.27 16 33 H 0.35 10.93 7.64 -89.69 -0.69 10.25 16 34 H 0.06 0.73 7.35 -2.38 -0.02 0.71 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 36 H 0.40 3.82 9.12 -74.05 -0.68 3.14 16 37 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.05 1.38 7.39 -2.39 -0.02 1.37 16 39 H 0.42 8.01 8.06 -92.71 -0.75 7.27 16 40 H 0.13 1.78 8.06 -2.39 -0.02 1.76 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -89.50 375.67 -4.63 -94.13 By element: Atomic # 1 Polarization: 47.66 SS G_CDS: -1.64 Total: 46.02 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: 5.77 Total: 27.64 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -6.37 Total: -120.88 kcal Atomic # 8 Polarization: -81.73 SS G_CDS: -4.29 Total: -86.02 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 1.90 Total: 39.11 kcal Total: -89.50 -4.63 -94.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283737158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.040 kcal (2) G-P(sol) polarization free energy of solvation -89.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds