Wall clock time and date at job start Tue Mar 31 2020 15:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39750 * 119.98478 * 269.06772 * 3 2 1 5 5 C 1.37620 * 120.06958 * 179.74602 * 4 3 2 6 6 C 1.39715 * 120.03318 * 0.50493 * 5 4 3 7 7 C 1.47769 * 120.01631 * 179.74365 * 6 5 4 8 8 O 1.21555 * 120.00140 * 179.72927 * 7 6 5 9 9 N 1.34779 * 119.99838 * 359.72386 * 7 6 5 10 10 C 1.46502 * 119.99994 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47309 * 180.02562 * 10 9 7 12 12 C 1.53358 * 109.42183 * 295.13335 * 11 10 9 13 13 C 1.53188 * 109.15126 * 178.67300 * 12 11 10 14 14 N 1.46927 * 108.89428 * 54.57704 * 13 12 11 15 15 C 1.36933 * 120.63022 * 126.33925 * 14 13 12 16 16 H 1.08000 * 120.00191 * 331.82823 * 15 14 13 17 17 C 1.38816 * 120.00216 * 151.82741 * 15 14 13 18 18 N 1.31624 * 119.99356 * 343.07025 * 17 15 14 19 19 Si 1.86793 * 120.00395 * 163.07047 * 17 15 14 20 20 H 1.48493 * 109.47484 * 90.00085 * 19 17 15 21 21 H 1.48503 * 109.47169 * 210.00310 * 19 17 15 22 22 H 1.48506 * 109.47138 * 329.99723 * 19 17 15 23 23 C 1.46927 * 118.73625 * 306.32307 * 14 13 12 24 24 C 1.53041 * 109.46440 * 175.00326 * 11 10 9 25 25 C 1.39846 * 119.96653 * 359.47002 * 6 5 4 26 26 F 1.35103 * 120.03610 * 180.29816 * 25 6 5 27 27 C 1.38098 * 119.93438 * 0.27738 * 25 6 5 28 28 H 1.08001 * 119.96688 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.98988 * 180.27548 * 5 4 3 30 30 H 0.97001 * 120.00416 * 0.02562 * 9 7 6 31 31 H 1.09003 * 109.46742 * 60.00680 * 10 9 7 32 32 H 1.09000 * 109.47343 * 300.00678 * 10 9 7 33 33 H 1.09005 * 109.46227 * 55.03135 * 11 10 9 34 34 H 1.08999 * 109.68305 * 58.70700 * 12 11 10 35 35 H 1.09002 * 109.46954 * 298.51478 * 12 11 10 36 36 H 1.08997 * 109.58674 * 294.71955 * 13 12 11 37 37 H 1.09000 * 109.58865 * 174.43595 * 13 12 11 38 38 H 0.96997 * 119.99488 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.58387 * 173.39335 * 23 14 13 40 40 H 1.09004 * 109.58558 * 293.67310 * 23 14 13 41 41 H 1.08998 * 109.49362 * 61.43368 * 24 11 10 42 42 H 1.08995 * 109.49667 * 301.34387 * 24 11 10 43 43 H 1.08003 * 120.02162 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2664 0.0206 1.2103 5 6 4.6426 0.0160 1.2124 6 6 5.3437 0.0020 0.0040 7 6 6.8214 0.0027 0.0067 8 8 7.4311 -0.0145 -1.0448 9 7 7.4932 0.0226 1.1749 10 6 8.9582 0.0228 1.1776 11 6 9.4656 0.0467 2.6208 12 6 9.0550 1.3671 3.2839 13 6 9.5372 1.3705 4.7379 14 7 10.9822 1.1057 4.7606 15 6 11.8372 1.9562 5.4091 16 1 11.5857 3.0017 5.5100 17 6 13.0275 1.4748 5.9369 18 7 13.1917 0.1814 6.1173 19 14 14.3959 2.6624 6.3911 20 1 14.2314 3.0904 7.8035 21 1 15.7097 1.9898 6.2275 22 1 14.3345 3.8512 5.5032 23 6 11.4922 -0.0893 4.0747 24 6 10.9908 -0.0788 2.6272 25 6 4.6463 -0.0186 -1.2080 26 9 5.3229 -0.0383 -2.3772 27 6 3.2654 -0.0192 -1.2085 28 1 2.7256 0.0360 2.1450 29 1 5.1811 0.0270 2.1486 30 1 7.0067 0.0360 2.0140 31 1 9.3223 0.9041 0.6495 32 1 9.3226 -0.8757 0.6795 33 1 9.0304 -0.7866 3.1726 34 1 7.9700 1.4681 3.2601 35 1 9.5102 2.1999 2.7476 36 1 9.0147 0.5950 5.2979 37 1 9.3369 2.3433 5.1871 38 1 14.0232 -0.1550 6.4865 39 1 12.5821 -0.0787 4.0839 40 1 11.1313 -0.9840 4.5821 41 1 11.4276 0.7675 2.0971 42 1 11.2816 -1.0066 2.1347 43 1 2.7253 -0.0347 -2.1437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337164678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:54 Heat of formation + Delta-G solvation = -8.028504 kcal Electronic energy + Delta-G solvation = -26969.875516 eV Core-core repulsion = 22930.069387 eV Total energy + Delta-G solvation = -4039.806130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.144 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.28829 -40.54496 -39.19532 -37.85015 -36.88826 -35.12253 -33.19241 -32.18549 -31.32726 -30.76692 -29.77037 -27.21922 -25.51864 -24.04672 -23.26313 -22.33114 -21.27235 -20.97733 -19.86235 -19.23963 -18.22133 -17.22165 -16.77404 -16.60016 -16.23026 -15.75695 -15.28456 -15.24549 -14.83161 -14.60368 -14.48106 -14.07327 -14.04864 -13.82678 -13.62870 -13.50584 -13.23912 -13.21253 -12.78208 -12.56864 -12.41759 -12.38037 -12.10169 -11.93217 -11.39652 -11.03185 -10.73995 -10.57402 -10.34214 -10.27584 -10.21029 -9.93948 -9.84225 -9.61344 -9.50005 -9.45225 -9.12279 -8.49956 -6.70495 -5.82424 -3.24723 -0.33618 0.45405 1.90944 2.02199 2.78015 2.83825 3.05208 3.22202 3.35160 3.42720 3.44948 3.65027 4.00814 4.19575 4.25191 4.45545 4.47022 4.80045 5.00184 5.13054 5.18595 5.27316 5.30669 5.33656 5.37575 5.43851 5.54631 5.77909 5.84970 5.95124 5.98501 6.05363 6.25688 6.27651 6.37596 6.54687 6.62569 6.69864 6.75356 6.82765 6.91977 7.25776 7.34024 7.62205 7.76558 7.95069 8.42132 9.18277 9.81755 10.38040 11.26162 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024122 B = 0.002126 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.469603 B =13165.200326 C =13903.680078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.251 3.749 3 C 0.025 3.975 4 C -0.088 4.088 5 C -0.057 4.057 6 C -0.140 4.140 7 C 0.549 3.451 8 O -0.521 6.521 9 N -0.714 5.714 10 C 0.123 3.877 11 C -0.090 4.090 12 C -0.128 4.128 13 C 0.145 3.855 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.171 3.829 24 C -0.133 4.133 25 C 0.161 3.839 26 F -0.106 7.106 27 C -0.118 4.118 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.400 0.600 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.016 0.984 37 H 0.053 0.947 38 H 0.254 0.746 39 H 0.088 0.912 40 H 0.018 0.982 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.837 -2.247 -11.165 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.072 5.072 2 C -0.065 4.065 3 C 0.022 3.978 4 C -0.108 4.108 5 C -0.076 4.076 6 C -0.145 4.145 7 C 0.335 3.665 8 O -0.398 6.398 9 N -0.366 5.366 10 C 0.000 4.000 11 C -0.109 4.109 12 C -0.167 4.167 13 C 0.018 3.982 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.045 3.955 24 C -0.173 4.173 25 C 0.140 3.860 26 F -0.084 7.084 27 C -0.139 4.139 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.236 0.764 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.036 0.964 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -19.934 -2.336 -11.883 23.324 hybrid contribution 1.033 0.529 0.489 1.259 sum -18.901 -1.806 -11.394 22.144 Atomic orbital electron populations 1.81312 1.11808 1.07470 1.06623 1.25453 0.92354 0.94411 0.94310 1.15772 0.84658 1.03403 0.94000 1.21187 0.93880 0.98465 0.97290 1.21217 0.93741 0.95468 0.97186 1.20429 0.94786 1.06041 0.93231 1.17944 0.86144 0.77861 0.84574 1.90868 1.69222 1.48734 1.30967 1.45997 1.08518 1.74240 1.07878 1.21674 0.77388 1.02350 0.98601 1.21384 0.98036 0.98789 0.92729 1.22146 0.98338 0.96717 0.99515 1.20883 0.86473 0.98495 0.92314 1.44041 1.00236 1.27110 1.60104 1.19157 0.99711 0.89900 1.29447 0.91785 1.25046 1.00185 0.95791 0.98641 1.70025 1.25649 1.11663 1.47391 0.86319 0.81828 0.80470 0.78296 1.21414 1.21546 1.20485 1.20766 1.00329 0.88200 0.86178 1.22172 0.92816 1.00486 1.01784 1.17358 0.88987 0.98286 0.81353 1.91656 1.79794 1.92585 1.44347 1.21107 0.92045 1.01835 0.98937 0.83342 0.83239 0.76397 0.91195 0.91387 0.91200 0.93505 0.92066 0.96619 0.92890 0.93620 0.89400 0.96395 0.92316 0.92976 0.82915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -3.78 18.54 41.84 0.78 -3.00 16 2 C 0.25 1.74 15.32 -22.47 -0.34 1.39 16 3 C 0.03 0.13 5.73 -106.92 -0.61 -0.48 16 4 C -0.09 -0.35 9.73 -39.24 -0.38 -0.73 16 5 C -0.06 -0.28 9.52 -39.26 -0.37 -0.65 16 6 C -0.14 -1.16 5.88 -104.85 -0.62 -1.78 16 7 C 0.55 6.35 7.77 -12.36 -0.10 6.25 16 8 O -0.52 -8.20 15.32 5.32 0.08 -8.12 16 9 N -0.71 -7.25 5.22 -61.28 -0.32 -7.57 16 10 C 0.12 1.53 5.07 -4.04 -0.02 1.51 16 11 C -0.09 -1.27 2.19 -90.42 -0.20 -1.47 16 12 C -0.13 -1.88 5.27 -26.45 -0.14 -2.02 16 13 C 0.14 2.74 6.50 -3.71 -0.02 2.72 16 14 N -0.59 -14.00 2.99 -172.32 -0.52 -14.52 16 15 C -0.25 -6.69 9.58 -15.06 -0.14 -6.84 16 16 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 18 N -0.90 -25.50 11.20 55.49 0.62 -24.88 16 19 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.17 3.83 5.30 -3.71 -0.02 3.81 16 24 C -0.13 -2.29 5.36 -26.62 -0.14 -2.43 16 25 C 0.16 1.36 7.27 -39.03 -0.28 1.08 16 26 F -0.11 -1.19 15.52 2.25 0.03 -1.16 16 27 C -0.12 -0.68 9.71 -39.15 -0.38 -1.06 16 28 H 0.15 0.27 8.06 -52.49 -0.42 -0.16 16 29 H 0.15 0.40 6.38 -52.49 -0.34 0.07 16 30 H 0.40 2.96 5.67 -40.82 -0.23 2.73 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.53 7.16 -51.93 -0.37 0.16 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 38 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -32.68 365.49 -8.15 -40.83 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.44 Total: -2.52 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -3.86 Total: -0.74 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.56 Total: -49.96 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.08 Total: -8.12 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.03 Total: -1.16 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.68 -8.15 -40.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337164678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.797 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds