Wall clock time and date at job start Tue Mar 31 2020 15:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39750 * 119.98478 * 269.06772 * 3 2 1 5 5 C 1.37620 * 120.06958 * 179.74602 * 4 3 2 6 6 C 1.39715 * 120.03318 * 0.50493 * 5 4 3 7 7 C 1.47769 * 120.01631 * 179.74365 * 6 5 4 8 8 O 1.21555 * 120.00140 * 179.72927 * 7 6 5 9 9 N 1.34779 * 119.99838 * 359.72386 * 7 6 5 10 10 C 1.46502 * 119.99994 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47309 * 180.02562 * 10 9 7 12 12 C 1.53358 * 109.42183 * 295.13335 * 11 10 9 13 13 C 1.53188 * 109.15126 * 178.67300 * 12 11 10 14 14 N 1.46927 * 108.89428 * 54.57704 * 13 12 11 15 15 C 1.36933 * 120.63022 * 126.33925 * 14 13 12 16 16 H 1.08000 * 120.00191 * 331.82823 * 15 14 13 17 17 C 1.38816 * 120.00216 * 151.82741 * 15 14 13 18 18 N 1.31624 * 119.99356 * 343.07025 * 17 15 14 19 19 Si 1.86793 * 120.00395 * 163.07047 * 17 15 14 20 20 H 1.48493 * 109.47484 * 90.00085 * 19 17 15 21 21 H 1.48503 * 109.47169 * 210.00310 * 19 17 15 22 22 H 1.48506 * 109.47138 * 329.99723 * 19 17 15 23 23 C 1.46927 * 118.73625 * 306.32307 * 14 13 12 24 24 C 1.53041 * 109.46440 * 175.00326 * 11 10 9 25 25 C 1.39846 * 119.96653 * 359.47002 * 6 5 4 26 26 F 1.35103 * 120.03610 * 180.29816 * 25 6 5 27 27 C 1.38098 * 119.93438 * 0.27738 * 25 6 5 28 28 H 1.08001 * 119.96688 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.98988 * 180.27548 * 5 4 3 30 30 H 0.97001 * 120.00416 * 0.02562 * 9 7 6 31 31 H 1.09003 * 109.46742 * 60.00680 * 10 9 7 32 32 H 1.09000 * 109.47343 * 300.00678 * 10 9 7 33 33 H 1.09005 * 109.46227 * 55.03135 * 11 10 9 34 34 H 1.08999 * 109.68305 * 58.70700 * 12 11 10 35 35 H 1.09002 * 109.46954 * 298.51478 * 12 11 10 36 36 H 1.08997 * 109.58674 * 294.71955 * 13 12 11 37 37 H 1.09000 * 109.58865 * 174.43595 * 13 12 11 38 38 H 0.96997 * 119.99488 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.58387 * 173.39335 * 23 14 13 40 40 H 1.09004 * 109.58558 * 293.67310 * 23 14 13 41 41 H 1.08998 * 109.49362 * 61.43368 * 24 11 10 42 42 H 1.08995 * 109.49667 * 301.34387 * 24 11 10 43 43 H 1.08003 * 120.02162 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2664 0.0206 1.2103 5 6 4.6426 0.0160 1.2124 6 6 5.3437 0.0020 0.0040 7 6 6.8214 0.0027 0.0067 8 8 7.4311 -0.0145 -1.0448 9 7 7.4932 0.0226 1.1749 10 6 8.9582 0.0228 1.1776 11 6 9.4656 0.0467 2.6208 12 6 9.0550 1.3671 3.2839 13 6 9.5372 1.3705 4.7379 14 7 10.9822 1.1057 4.7606 15 6 11.8372 1.9562 5.4091 16 1 11.5857 3.0017 5.5100 17 6 13.0275 1.4748 5.9369 18 7 13.1917 0.1814 6.1173 19 14 14.3959 2.6624 6.3911 20 1 14.2314 3.0904 7.8035 21 1 15.7097 1.9898 6.2275 22 1 14.3345 3.8512 5.5032 23 6 11.4922 -0.0893 4.0747 24 6 10.9908 -0.0788 2.6272 25 6 4.6463 -0.0186 -1.2080 26 9 5.3229 -0.0383 -2.3772 27 6 3.2654 -0.0192 -1.2085 28 1 2.7256 0.0360 2.1450 29 1 5.1811 0.0270 2.1486 30 1 7.0067 0.0360 2.0140 31 1 9.3223 0.9041 0.6495 32 1 9.3226 -0.8757 0.6795 33 1 9.0304 -0.7866 3.1726 34 1 7.9700 1.4681 3.2601 35 1 9.5102 2.1999 2.7476 36 1 9.0147 0.5950 5.2979 37 1 9.3369 2.3433 5.1871 38 1 14.0232 -0.1550 6.4865 39 1 12.5821 -0.0787 4.0839 40 1 11.1313 -0.9840 4.5821 41 1 11.4276 0.7675 2.0971 42 1 11.2816 -1.0066 2.1347 43 1 2.7253 -0.0347 -2.1437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337164678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:53 Heat of formation + Delta-G solvation = -27.713279 kcal Electronic energy + Delta-G solvation = -26970.729112 eV Core-core repulsion = 22930.069387 eV Total energy + Delta-G solvation = -4040.659725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.96949 -41.27964 -39.94119 -39.19185 -37.51303 -36.42582 -34.57735 -33.11064 -32.21888 -31.79048 -31.31968 -28.54963 -26.50311 -25.38632 -23.89191 -23.72681 -22.62652 -21.91054 -20.67906 -20.39409 -19.08300 -18.54157 -17.85140 -17.20609 -16.94644 -16.80875 -16.56763 -16.19004 -15.93225 -15.61681 -15.25815 -15.11358 -15.06276 -14.94749 -14.71503 -14.65730 -14.46166 -13.99637 -13.79427 -13.77534 -13.43459 -13.36426 -13.05200 -12.95229 -12.78378 -12.56087 -12.52664 -12.23100 -11.99582 -11.78973 -11.57636 -11.28077 -11.06112 -10.98213 -10.49820 -10.38546 -10.08910 -9.88836 -8.62142 -7.84536 -5.28420 -0.86311 0.02289 1.31367 1.47067 1.48183 1.49592 1.58262 2.02712 2.09791 2.51795 2.53595 2.68029 3.14501 3.30270 3.54836 3.59874 3.76633 3.85027 3.89663 3.98934 3.99252 4.13579 4.42240 4.56615 4.60296 4.66077 4.75396 4.79380 4.86382 4.89396 4.93291 4.99025 5.04393 5.08482 5.19094 5.33136 5.34961 5.39292 5.49378 5.51337 5.60673 5.70392 5.84678 6.30449 6.43597 6.48180 7.14325 7.19660 7.93173 8.42564 9.21379 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024122 B = 0.002126 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.469603 B =13165.200326 C =13903.680078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.278 3.722 3 C 0.029 3.971 4 C -0.067 4.067 5 C -0.044 4.044 6 C -0.151 4.151 7 C 0.548 3.452 8 O -0.571 6.571 9 N -0.701 5.701 10 C 0.135 3.865 11 C -0.078 4.078 12 C -0.115 4.115 13 C 0.138 3.862 14 N -0.613 5.613 15 C -0.258 4.258 16 H 0.064 0.936 17 C -0.052 4.052 18 N -0.934 5.934 19 Si 0.962 3.038 20 H -0.285 1.285 21 H -0.295 1.295 22 H -0.273 1.273 23 C 0.177 3.823 24 C -0.123 4.123 25 C 0.135 3.865 26 F -0.131 7.131 27 C -0.107 4.107 28 H 0.181 0.819 29 H 0.180 0.820 30 H 0.417 0.583 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.022 0.978 37 H 0.050 0.950 38 H 0.249 0.751 39 H 0.048 0.952 40 H 0.000 1.000 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.159 -1.803 -10.678 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.037 4.037 3 C 0.025 3.975 4 C -0.087 4.087 5 C -0.062 4.062 6 C -0.156 4.156 7 C 0.336 3.664 8 O -0.452 6.452 9 N -0.354 5.354 10 C 0.012 3.988 11 C -0.096 4.096 12 C -0.154 4.154 13 C 0.013 3.987 14 N -0.337 5.337 15 C -0.389 4.389 16 H 0.082 0.918 17 C -0.248 4.248 18 N -0.580 5.580 19 Si 0.790 3.210 20 H -0.211 1.211 21 H -0.221 1.221 22 H -0.198 1.198 23 C 0.051 3.949 24 C -0.163 4.163 25 C 0.115 3.885 26 F -0.109 7.109 27 C -0.128 4.128 28 H 0.199 0.801 29 H 0.197 0.803 30 H 0.256 0.744 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.019 0.981 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -22.307 -1.877 -11.377 25.111 hybrid contribution 1.683 0.389 0.381 1.769 sum -20.623 -1.488 -10.996 23.419 Atomic orbital electron populations 1.81356 1.13199 1.09163 1.08103 1.25507 0.92294 0.92992 0.92915 1.15788 0.83696 1.03565 0.94440 1.21531 0.93495 0.95769 0.97906 1.21487 0.94041 0.93863 0.96801 1.20289 0.92827 1.07933 0.94553 1.18402 0.87489 0.76611 0.83907 1.90848 1.70523 1.51058 1.32726 1.45782 1.07479 1.73644 1.08497 1.21324 0.78867 1.01745 0.96887 1.21210 0.95477 0.99038 0.93922 1.22015 1.00927 0.96433 0.96043 1.21100 0.83837 0.98446 0.95298 1.44335 1.02201 1.26900 1.60223 1.19476 1.00406 0.90469 1.28547 0.91811 1.25747 1.02316 0.97146 0.99562 1.70168 1.25771 1.13193 1.48905 0.85366 0.78934 0.78698 0.77996 1.21149 1.22096 1.19762 1.20564 0.98084 0.87277 0.88993 1.21974 0.95401 1.00972 0.97944 1.17632 0.89850 1.00286 0.80779 1.91591 1.80448 1.93109 1.45767 1.21146 0.90980 1.00722 0.99947 0.80126 0.80298 0.74425 0.92396 0.91729 0.89880 0.88932 0.93324 0.95999 0.93115 0.94236 0.93375 0.98149 0.93331 0.91339 0.81654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.64 18.54 19.01 0.35 -7.29 16 2 C 0.28 3.11 15.32 88.33 1.35 4.47 16 3 C 0.03 0.21 5.73 -21.35 -0.12 0.08 16 4 C -0.07 -0.21 9.73 22.49 0.22 0.01 16 5 C -0.04 -0.23 9.52 22.48 0.21 -0.01 16 6 C -0.15 -2.13 5.88 -20.01 -0.12 -2.25 16 7 C 0.55 11.70 7.77 86.76 0.67 12.38 16 8 O -0.57 -17.91 15.32 -3.89 -0.06 -17.97 16 9 N -0.70 -12.03 5.22 -466.05 -2.43 -14.46 16 10 C 0.14 3.08 5.07 86.38 0.44 3.52 16 11 C -0.08 -1.98 2.19 -10.66 -0.02 -2.01 16 12 C -0.12 -3.03 5.27 30.78 0.16 -2.87 16 13 C 0.14 4.99 6.50 86.36 0.56 5.55 16 14 N -0.61 -29.01 2.99 -699.11 -2.09 -31.10 16 15 C -0.26 -13.81 9.58 84.04 0.81 -13.00 16 16 H 0.06 3.33 7.88 -2.91 -0.02 3.31 16 17 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 18 N -0.93 -54.25 11.20 21.65 0.24 -54.01 16 19 Si 0.96 44.27 29.59 68.60 2.03 46.30 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.18 8.03 5.30 86.36 0.46 8.48 16 24 C -0.12 -4.17 5.36 30.67 0.16 -4.01 16 25 C 0.14 2.11 7.27 22.63 0.16 2.28 16 26 F -0.13 -3.01 15.52 44.97 0.70 -2.31 16 27 C -0.11 -1.01 9.71 22.55 0.22 -0.79 16 28 H 0.18 -0.47 8.06 -2.91 -0.02 -0.49 16 29 H 0.18 -0.14 6.38 -2.91 -0.02 -0.16 16 30 H 0.42 4.15 5.67 -92.71 -0.53 3.62 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.09 1.62 7.16 -2.39 -0.02 1.61 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 38 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.05 2.56 6.06 -2.39 -0.01 2.54 16 40 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -75.37 365.49 4.85 -70.51 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: 0.53 Total: 0.97 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.59 Total: 9.36 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -3.93 Total: -106.86 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.06 Total: -17.97 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.70 Total: -2.31 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -75.37 4.85 -70.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337164678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.800 kcal (2) G-P(sol) polarization free energy of solvation -75.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds