Wall clock time and date at job start Tue Mar 31 2020 16:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46499 * 109.46853 * 120.00395 * 2 1 3 5 5 C 1.34773 * 119.99864 * 274.99647 * 4 2 1 6 6 O 1.21558 * 120.00087 * 359.97438 * 5 4 2 7 7 C 1.47756 * 119.99963 * 180.02562 * 5 4 2 8 8 C 1.40609 * 120.27030 * 0.02562 * 7 5 4 9 9 N 1.30792 * 121.53944 * 179.97438 * 8 7 5 10 10 C 1.33823 * 121.73343 * 359.67747 * 9 8 7 11 11 C 1.40539 * 120.79256 * 179.74341 * 10 9 8 12 12 C 1.36095 * 119.84769 * 180.33514 * 11 10 9 13 13 C 1.39563 * 121.06271 * 0.26512 * 12 11 10 14 14 F 1.35097 * 119.61190 * 180.02562 * 13 12 11 15 15 C 1.36353 * 120.77579 * 359.97438 * 13 12 11 16 16 C 1.40503 * 119.60480 * 0.02887 * 15 13 12 17 17 C 1.39003 * 120.27328 * 179.97438 * 7 5 4 18 18 C 1.53002 * 109.46744 * 239.99967 * 2 1 3 19 19 H 1.08992 * 109.47567 * 300.00454 * 18 2 1 20 20 C 1.52998 * 109.46744 * 180.02562 * 18 2 1 21 21 N 1.46499 * 109.47097 * 60.00577 * 18 2 1 22 22 C 1.36937 * 120.00144 * 204.99624 * 21 18 2 23 23 H 1.08001 * 119.99901 * 359.97438 * 22 21 18 24 24 C 1.38815 * 120.00193 * 179.97438 * 22 21 18 25 25 N 1.31619 * 119.99721 * 179.97438 * 24 22 21 26 26 Si 1.86793 * 119.99966 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47287 * 89.99905 * 26 24 22 28 28 H 1.48499 * 109.47080 * 210.00001 * 26 24 22 29 29 H 1.48499 * 109.47183 * 329.99608 * 26 24 22 30 30 H 1.09006 * 109.47606 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47253 * 299.99952 * 1 2 3 32 32 H 1.09005 * 109.47341 * 59.99455 * 1 2 3 33 33 H 0.96996 * 119.99861 * 95.00263 * 4 2 1 34 34 H 1.07993 * 119.22695 * 359.97438 * 8 7 5 35 35 H 1.08002 * 120.07845 * 0.62047 * 11 10 9 36 36 H 1.08002 * 119.46826 * 180.27526 * 12 11 10 37 37 H 1.08002 * 120.19467 * 179.97438 * 15 13 12 38 38 H 1.08005 * 121.01316 * 0.02562 * 17 7 5 39 39 H 1.09001 * 109.47303 * 60.00082 * 20 18 2 40 40 H 1.09004 * 109.46985 * 180.02562 * 20 18 2 41 41 H 1.09005 * 109.47475 * 299.99901 * 20 18 2 42 42 H 0.97007 * 120.00420 * 24.99102 * 21 18 2 43 43 H 0.97006 * 119.99843 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8584 1.1612 2.4116 7 6 2.6400 -0.7149 3.5634 8 6 2.9769 -2.0788 3.5063 9 7 3.4161 -2.7196 4.5586 10 6 3.5729 -2.1097 5.7394 11 6 4.0413 -2.8188 6.8588 12 6 4.1871 -2.1811 8.0521 13 6 3.8733 -0.8281 8.1887 14 9 4.0297 -0.2241 9.3870 15 6 3.4117 -0.1083 7.1266 16 6 3.2495 -0.7365 5.8803 17 6 2.7754 -0.0269 4.7636 18 6 2.0399 -0.7213 -1.2493 19 1 1.6765 -1.7489 -1.2494 20 6 3.5699 -0.7218 -1.2490 21 7 1.5516 -0.0306 -2.4454 22 6 1.4208 -0.7136 -3.6250 23 1 1.6780 -1.7614 -3.6737 24 6 0.9577 -0.0593 -4.7583 25 7 0.8324 -0.7158 -5.8922 26 14 0.5135 1.7531 -4.6744 27 1 1.7106 2.5715 -4.9942 28 1 -0.5623 2.0451 -5.6555 29 1 0.0390 2.0837 -3.3066 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2489 -1.6318 1.1525 34 1 2.8707 -2.6096 2.5719 35 1 4.2893 -3.8663 6.7710 36 1 4.5518 -2.7308 8.9073 37 1 3.1713 0.9382 7.2429 38 1 2.5243 1.0211 4.8357 39 1 3.9329 -1.2359 -0.3590 40 1 3.9332 -1.2353 -2.1392 41 1 3.9337 0.3057 -1.2488 42 1 1.3209 0.9106 -2.4019 43 1 0.5091 -0.2584 -6.6843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570641917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:11 Heat of formation + Delta-G solvation = -12.421175 kcal Electronic energy + Delta-G solvation = -26965.786957 eV Core-core repulsion = 22925.790347 eV Total energy + Delta-G solvation = -4039.996610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.43768 -41.41663 -39.80282 -37.35188 -36.88504 -34.23059 -33.95978 -32.12541 -31.18930 -30.32687 -29.57543 -28.94968 -25.44420 -24.43937 -23.94038 -22.91864 -22.65687 -21.00958 -20.32818 -19.03388 -18.36350 -18.18537 -17.58088 -17.05774 -16.18614 -16.01352 -15.65326 -15.27355 -15.14149 -14.67673 -14.52901 -14.31743 -14.16948 -13.99116 -13.68212 -13.54898 -13.51012 -13.16765 -12.96528 -12.54898 -12.23961 -11.96001 -11.92905 -11.87874 -11.43226 -11.17799 -11.05258 -10.96499 -10.83286 -10.49987 -10.32100 -10.00406 -9.82292 -9.63310 -9.35289 -9.14082 -8.92173 -8.80007 -7.35196 -5.81998 -3.18808 -0.34633 0.01054 1.28793 1.97973 2.89585 2.94898 3.35236 3.38794 3.43969 3.57127 3.60484 3.67451 3.96278 4.16132 4.24643 4.31226 4.45806 4.55017 4.60348 4.84323 5.06717 5.08111 5.23635 5.32142 5.32550 5.36894 5.48528 5.51820 5.57065 5.61030 5.64923 5.89193 5.94802 5.99642 6.17088 6.18397 6.22698 6.31389 6.42859 6.61080 6.71770 6.87954 7.30821 7.41145 7.91586 8.06753 8.36133 9.13399 9.85946 10.04411 11.35835 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.002145 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.781637 B =13049.962863 C =13579.000858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.087 0.913 4 N -0.708 5.708 5 C 0.562 3.438 6 O -0.534 6.534 7 C -0.179 4.179 8 C 0.163 3.837 9 N -0.468 5.468 10 C 0.130 3.870 11 C -0.063 4.063 12 C -0.126 4.126 13 C 0.101 3.899 14 F -0.135 7.135 15 C -0.125 4.125 16 C -0.089 4.089 17 C 0.009 3.991 18 C 0.173 3.827 19 H 0.061 0.939 20 C -0.166 4.166 21 N -0.742 5.742 22 C -0.244 4.244 23 H 0.091 0.909 24 C 0.007 3.993 25 N -0.932 5.932 26 Si 0.882 3.118 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.276 1.276 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.399 0.601 34 H 0.167 0.833 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.211 -3.176 29.066 29.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.028 3.972 3 H 0.105 0.895 4 N -0.359 5.359 5 C 0.347 3.653 6 O -0.412 6.412 7 C -0.184 4.184 8 C -0.011 4.011 9 N -0.175 5.175 10 C 0.009 3.991 11 C -0.081 4.081 12 C -0.146 4.146 13 C 0.082 3.918 14 F -0.114 7.114 15 C -0.144 4.144 16 C -0.092 4.092 17 C -0.017 4.017 18 C 0.063 3.937 19 H 0.079 0.921 20 C -0.226 4.226 21 N -0.385 5.385 22 C -0.373 4.373 23 H 0.109 0.891 24 C -0.189 4.189 25 N -0.579 5.579 26 Si 0.712 3.288 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.202 1.202 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.234 0.766 34 H 0.184 0.816 35 H 0.168 0.832 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.175 0.825 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.196 0.804 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.226 -3.394 28.962 29.817 hybrid contribution -0.375 1.837 0.087 1.877 sum 5.850 -1.557 29.049 29.673 Atomic orbital electron populations 1.22080 0.94695 1.02327 1.02251 1.21434 0.94616 0.97650 0.83510 0.89509 1.45963 1.66323 1.14004 1.09569 1.17886 0.78114 0.86514 0.82766 1.90796 1.50292 1.15292 1.84775 1.21087 1.05705 0.96008 0.95615 1.23146 0.90573 0.90238 0.97117 1.67963 1.13279 1.37812 0.98460 1.19041 0.97207 0.90107 0.92760 1.20739 0.96875 1.00783 0.89721 1.20997 1.01203 0.92983 0.99441 1.17367 1.01671 0.91556 0.81229 1.91539 1.93287 1.83398 1.43138 1.20996 1.01203 1.01208 0.91019 1.18511 1.01881 0.94515 0.94251 1.21942 0.89583 1.00590 0.89624 1.20365 0.92366 0.95927 0.85037 0.92124 1.22433 0.98442 1.01237 1.00483 1.42643 1.79781 1.09465 1.06643 1.19003 1.37381 0.95629 0.85315 0.89097 1.24658 1.01232 0.97498 0.95551 1.69696 1.52353 1.35594 1.00243 0.86591 0.78208 0.86791 0.77167 1.21062 1.21724 1.20183 0.92436 0.93142 0.90523 0.76580 0.81628 0.83206 0.83652 0.83505 0.82544 0.94249 0.91994 0.93449 0.80438 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.33 37.16 0.35 -2.04 16 2 C 0.13 1.99 2.21 -67.93 -0.15 1.84 16 3 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 4 N -0.71 -8.38 4.34 -54.78 -0.24 -8.62 16 5 C 0.56 7.12 7.74 -12.37 -0.10 7.03 16 6 O -0.53 -8.60 16.04 5.31 0.09 -8.52 16 7 C -0.18 -1.84 5.89 -104.83 -0.62 -2.45 16 8 C 0.16 1.48 10.68 -17.10 -0.18 1.29 16 9 N -0.47 -4.64 10.30 -10.67 -0.11 -4.75 16 10 C 0.13 1.21 6.61 -84.78 -0.56 0.65 16 11 C -0.06 -0.44 9.97 -39.48 -0.39 -0.83 16 12 C -0.13 -0.77 9.92 -39.86 -0.40 -1.16 16 13 C 0.10 0.74 7.24 -39.77 -0.29 0.46 16 14 F -0.14 -1.08 17.25 2.25 0.04 -1.04 16 15 C -0.12 -0.94 9.73 -39.41 -0.38 -1.32 16 16 C -0.09 -0.80 5.74 -106.82 -0.61 -1.41 16 17 C 0.01 0.09 9.46 -38.43 -0.36 -0.28 16 18 C 0.17 2.98 2.52 -67.93 -0.17 2.81 16 19 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 20 C -0.17 -2.65 9.33 37.16 0.35 -2.30 16 21 N -0.74 -16.33 4.23 -53.43 -0.23 -16.56 16 22 C -0.24 -6.49 10.41 -15.06 -0.16 -6.65 16 23 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -28.47 13.97 55.49 0.78 -27.70 16 26 Si 0.88 21.59 27.74 -169.99 -4.71 16.88 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.32 7.45 -51.93 -0.39 0.94 16 33 H 0.40 3.62 6.41 -40.82 -0.26 3.36 16 34 H 0.17 1.07 6.37 -52.49 -0.33 0.74 16 35 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 37 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.16 1.37 7.70 -52.48 -0.40 0.96 16 39 H 0.04 0.50 7.44 -51.93 -0.39 0.11 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.36 8.02 5.45 -40.82 -0.22 7.80 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -32.77 366.46 -8.00 -40.77 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.36 Total: 8.29 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -3.77 Total: -4.27 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.20 Total: -57.63 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.77 -8.00 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570641917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.348 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds