Wall clock time and date at job start Tue Mar 31 2020 16:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46499 * 109.46853 * 120.00395 * 2 1 3 5 5 C 1.34773 * 119.99864 * 274.99647 * 4 2 1 6 6 O 1.21558 * 120.00087 * 359.97438 * 5 4 2 7 7 C 1.47756 * 119.99963 * 180.02562 * 5 4 2 8 8 C 1.40609 * 120.27030 * 0.02562 * 7 5 4 9 9 N 1.30792 * 121.53944 * 179.97438 * 8 7 5 10 10 C 1.33823 * 121.73343 * 359.67747 * 9 8 7 11 11 C 1.40539 * 120.79256 * 179.74341 * 10 9 8 12 12 C 1.36095 * 119.84769 * 180.33514 * 11 10 9 13 13 C 1.39563 * 121.06271 * 0.26512 * 12 11 10 14 14 F 1.35097 * 119.61190 * 180.02562 * 13 12 11 15 15 C 1.36353 * 120.77579 * 359.97438 * 13 12 11 16 16 C 1.40503 * 119.60480 * 0.02887 * 15 13 12 17 17 C 1.39003 * 120.27328 * 179.97438 * 7 5 4 18 18 C 1.53002 * 109.46744 * 239.99967 * 2 1 3 19 19 H 1.08992 * 109.47567 * 300.00454 * 18 2 1 20 20 C 1.52998 * 109.46744 * 180.02562 * 18 2 1 21 21 N 1.46499 * 109.47097 * 60.00577 * 18 2 1 22 22 C 1.36937 * 120.00144 * 204.99624 * 21 18 2 23 23 H 1.08001 * 119.99901 * 359.97438 * 22 21 18 24 24 C 1.38815 * 120.00193 * 179.97438 * 22 21 18 25 25 N 1.31619 * 119.99721 * 179.97438 * 24 22 21 26 26 Si 1.86793 * 119.99966 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47287 * 89.99905 * 26 24 22 28 28 H 1.48499 * 109.47080 * 210.00001 * 26 24 22 29 29 H 1.48499 * 109.47183 * 329.99608 * 26 24 22 30 30 H 1.09006 * 109.47606 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47253 * 299.99952 * 1 2 3 32 32 H 1.09005 * 109.47341 * 59.99455 * 1 2 3 33 33 H 0.96996 * 119.99861 * 95.00263 * 4 2 1 34 34 H 1.07993 * 119.22695 * 359.97438 * 8 7 5 35 35 H 1.08002 * 120.07845 * 0.62047 * 11 10 9 36 36 H 1.08002 * 119.46826 * 180.27526 * 12 11 10 37 37 H 1.08002 * 120.19467 * 179.97438 * 15 13 12 38 38 H 1.08005 * 121.01316 * 0.02562 * 17 7 5 39 39 H 1.09001 * 109.47303 * 60.00082 * 20 18 2 40 40 H 1.09004 * 109.46985 * 180.02562 * 20 18 2 41 41 H 1.09005 * 109.47475 * 299.99901 * 20 18 2 42 42 H 0.97007 * 120.00420 * 24.99102 * 21 18 2 43 43 H 0.97006 * 119.99843 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8584 1.1612 2.4116 7 6 2.6400 -0.7149 3.5634 8 6 2.9769 -2.0788 3.5063 9 7 3.4161 -2.7196 4.5586 10 6 3.5729 -2.1097 5.7394 11 6 4.0413 -2.8188 6.8588 12 6 4.1871 -2.1811 8.0521 13 6 3.8733 -0.8281 8.1887 14 9 4.0297 -0.2241 9.3870 15 6 3.4117 -0.1083 7.1266 16 6 3.2495 -0.7365 5.8803 17 6 2.7754 -0.0269 4.7636 18 6 2.0399 -0.7213 -1.2493 19 1 1.6765 -1.7489 -1.2494 20 6 3.5699 -0.7218 -1.2490 21 7 1.5516 -0.0306 -2.4454 22 6 1.4208 -0.7136 -3.6250 23 1 1.6780 -1.7614 -3.6737 24 6 0.9577 -0.0593 -4.7583 25 7 0.8324 -0.7158 -5.8922 26 14 0.5135 1.7531 -4.6744 27 1 1.7106 2.5715 -4.9942 28 1 -0.5623 2.0451 -5.6555 29 1 0.0390 2.0837 -3.3066 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2489 -1.6318 1.1525 34 1 2.8707 -2.6096 2.5719 35 1 4.2893 -3.8663 6.7710 36 1 4.5518 -2.7308 8.9073 37 1 3.1713 0.9382 7.2429 38 1 2.5243 1.0211 4.8357 39 1 3.9329 -1.2359 -0.3590 40 1 3.9332 -1.2353 -2.1392 41 1 3.9337 0.3057 -1.2488 42 1 1.3209 0.9106 -2.4019 43 1 0.5091 -0.2584 -6.6843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570641917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:11 Heat of formation + Delta-G solvation = -33.313546 kcal Electronic energy + Delta-G solvation = -26966.692918 eV Core-core repulsion = 22925.790347 eV Total energy + Delta-G solvation = -4040.902571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.02699 -42.12223 -40.79831 -38.47837 -37.78339 -35.73062 -34.64949 -33.78450 -32.27229 -30.95626 -30.77161 -30.45177 -26.22751 -25.69294 -25.09199 -24.07480 -23.42905 -22.05848 -21.70981 -20.04026 -19.64842 -18.99652 -18.59753 -17.83258 -17.17664 -16.77708 -16.49941 -16.32640 -16.20383 -15.91718 -15.59926 -15.41357 -15.17809 -14.85745 -14.73350 -14.66116 -14.33973 -14.25605 -14.20499 -13.78901 -13.76097 -13.26827 -13.06286 -12.75522 -12.62463 -12.53296 -12.46286 -12.34227 -12.05571 -11.78930 -11.73530 -11.50177 -11.38218 -11.01981 -10.63074 -10.25224 -9.89754 -9.40848 -9.30622 -7.99112 -5.32125 -0.99309 -0.62937 0.65109 1.30189 1.40738 1.41866 1.48767 1.93755 2.06131 2.50492 2.88458 2.98918 3.10156 3.33242 3.37306 3.45651 3.59082 3.66981 3.71875 3.72479 3.88621 3.99536 4.16277 4.24195 4.31846 4.48568 4.59787 4.67621 4.73151 4.76178 4.85327 4.90021 4.94202 4.97807 5.00572 5.04036 5.15545 5.27244 5.31544 5.45094 5.52326 5.61734 5.81437 6.24196 6.44060 6.65151 7.08166 7.11437 7.85519 8.02732 9.21888 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.002145 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.781637 B =13049.962863 C =13579.000858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.073 0.927 4 N -0.696 5.696 5 C 0.568 3.432 6 O -0.571 6.571 7 C -0.190 4.190 8 C 0.165 3.835 9 N -0.481 5.481 10 C 0.116 3.884 11 C -0.068 4.068 12 C -0.113 4.113 13 C 0.095 3.905 14 F -0.139 7.139 15 C -0.128 4.128 16 C -0.100 4.100 17 C 0.011 3.989 18 C 0.170 3.830 19 H 0.065 0.935 20 C -0.158 4.158 21 N -0.746 5.746 22 C -0.217 4.217 23 H 0.065 0.935 24 C -0.062 4.062 25 N -0.982 5.982 26 Si 0.945 3.055 27 H -0.284 1.284 28 H -0.299 1.299 29 H -0.252 1.252 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.414 0.586 34 H 0.190 0.810 35 H 0.168 0.832 36 H 0.174 0.826 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.076 0.924 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.364 0.636 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.906 -3.416 32.016 32.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 H 0.091 0.909 4 N -0.349 5.349 5 C 0.355 3.645 6 O -0.452 6.452 7 C -0.196 4.196 8 C -0.009 4.009 9 N -0.188 5.188 10 C -0.005 4.005 11 C -0.086 4.086 12 C -0.133 4.133 13 C 0.076 3.924 14 F -0.117 7.117 15 C -0.147 4.147 16 C -0.102 4.102 17 C -0.015 4.015 18 C 0.062 3.938 19 H 0.083 0.917 20 C -0.218 4.218 21 N -0.389 5.389 22 C -0.348 4.348 23 H 0.083 0.917 24 C -0.254 4.254 25 N -0.633 5.633 26 Si 0.773 3.227 27 H -0.210 1.210 28 H -0.226 1.226 29 H -0.176 1.176 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.253 0.747 34 H 0.206 0.794 35 H 0.186 0.814 36 H 0.191 0.809 37 H 0.178 0.822 38 H 0.177 0.823 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.197 0.803 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.948 -3.661 31.990 32.940 hybrid contribution -0.517 1.816 -0.634 1.992 sum 6.431 -1.845 31.356 32.062 Atomic orbital electron populations 1.22020 0.94803 1.02671 1.01420 1.21016 0.94374 0.96834 0.83634 0.90875 1.45720 1.66037 1.14632 1.08464 1.18147 0.77154 0.85999 0.83222 1.90780 1.52009 1.17005 1.85361 1.20857 1.07430 0.96582 0.94690 1.23439 0.89847 0.89723 0.97881 1.68017 1.13915 1.38049 0.98865 1.19424 0.97250 0.90491 0.93304 1.20966 0.96807 1.01644 0.89228 1.21287 0.99536 0.92430 1.00032 1.17550 1.01690 0.92178 0.80993 1.91535 1.93315 1.83572 1.43310 1.21147 1.00945 1.01999 0.90624 1.18569 1.02479 0.94639 0.94515 1.22068 0.88911 1.00812 0.89755 1.20555 0.93170 0.95904 0.84214 0.91672 1.22309 0.97008 1.01174 1.01309 1.42655 1.79957 1.09545 1.06776 1.18969 1.34526 0.94613 0.86729 0.91698 1.25387 1.02712 1.01880 0.95417 1.69862 1.54900 1.37452 1.01086 0.85561 0.77533 0.81591 0.78017 1.21008 1.22621 1.17625 0.91512 0.92773 0.92506 0.74731 0.79380 0.81404 0.80881 0.82202 0.82311 0.90487 0.94094 0.93959 0.80322 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 9.33 71.98 0.67 -3.75 16 2 C 0.15 4.19 2.21 44.99 0.10 4.28 16 3 H 0.07 2.35 7.58 -2.39 -0.02 2.33 16 4 N -0.70 -15.00 4.34 -445.50 -1.93 -16.94 16 5 C 0.57 13.52 7.74 86.76 0.67 14.19 16 6 O -0.57 -17.91 16.04 -3.90 -0.06 -17.98 16 7 C -0.19 -3.61 5.89 -20.00 -0.12 -3.72 16 8 C 0.16 2.64 10.68 85.43 0.91 3.55 16 9 N -0.48 -8.57 10.30 -187.66 -1.93 -10.50 16 10 C 0.12 1.93 6.61 40.28 0.27 2.20 16 11 C -0.07 -0.78 9.97 22.33 0.22 -0.55 16 12 C -0.11 -1.05 9.92 22.09 0.22 -0.83 16 13 C 0.10 1.19 7.24 22.15 0.16 1.35 16 14 F -0.14 -1.93 17.25 44.97 0.78 -1.16 16 15 C -0.13 -1.70 9.73 22.38 0.22 -1.49 16 16 C -0.10 -1.63 5.74 -21.29 -0.12 -1.75 16 17 C 0.01 0.20 9.46 23.02 0.22 0.42 16 18 C 0.17 5.61 2.52 44.99 0.11 5.72 16 19 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 20 C -0.16 -4.78 9.33 71.98 0.67 -4.11 16 21 N -0.75 -32.26 4.23 -322.95 -1.37 -33.62 16 22 C -0.22 -11.66 10.41 84.03 0.87 -10.79 16 23 H 0.07 3.78 8.06 -2.91 -0.02 3.76 16 24 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 25 N -0.98 -61.63 13.97 21.65 0.30 -61.32 16 26 Si 0.94 44.89 27.74 68.60 1.90 46.80 16 27 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 28 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 29 H -0.25 -10.80 6.52 99.48 0.65 -10.15 16 30 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.89 7.45 -2.38 -0.02 1.88 16 33 H 0.41 6.33 6.41 -92.71 -0.59 5.74 16 34 H 0.19 1.89 6.37 -2.91 -0.02 1.87 16 35 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 37 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.16 2.67 7.70 -2.91 -0.02 2.65 16 39 H 0.08 1.73 7.44 -2.39 -0.02 1.71 16 40 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.36 15.62 5.45 -92.70 -0.50 15.11 16 43 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -71.72 366.46 3.14 -68.58 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -0.09 Total: 24.53 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 5.55 Total: 1.61 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -4.93 Total: -122.38 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.06 Total: -17.98 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.78 Total: -1.16 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.80 kcal Total: -71.72 3.14 -68.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570641917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.265 kcal (2) G-P(sol) polarization free energy of solvation -71.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds