Wall clock time and date at job start Tue Mar 31 2020 16:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48496 * 109.47401 * 269.99661 * 3 2 1 5 5 H 1.48498 * 109.47150 * 29.99623 * 3 2 1 6 6 H 1.48499 * 109.47251 * 149.99483 * 3 2 1 7 7 C 1.37880 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00174 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99791 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46811 * 180.02562 * 9 7 2 11 11 C 1.46489 * 119.99803 * 269.99737 * 10 9 7 12 12 C 1.52997 * 109.47411 * 270.00142 * 11 10 9 13 13 C 1.52999 * 117.50217 * 243.62614 * 12 11 10 14 14 C 1.53000 * 60.00069 * 252.50850 * 13 12 11 15 15 C 1.34778 * 120.00059 * 90.00174 * 10 9 7 16 16 O 1.21282 * 119.99777 * 359.97438 * 15 10 9 17 17 C 1.50700 * 120.00116 * 179.97438 * 15 10 9 18 18 C 1.52994 * 109.47072 * 180.02562 * 17 15 10 19 19 C 1.50700 * 109.47072 * 179.97438 * 18 17 15 20 20 C 1.37973 * 120.07857 * 98.60444 * 19 18 17 21 21 C 1.38336 * 120.15094 * 179.97438 * 20 19 18 22 22 C 1.38391 * 120.30358 * 0.02562 * 21 20 19 23 23 C 1.37919 * 120.15332 * 0.02562 * 22 21 20 24 24 C 1.39608 * 120.07549 * 278.33237 * 19 18 17 25 25 C 1.47724 * 120.15096 * 359.97373 * 24 19 18 26 26 O 1.21474 * 119.99776 * 5.42879 * 25 24 19 27 27 O 1.34706 * 120.00280 * 185.42299 * 25 24 19 28 28 H 0.96997 * 120.00241 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47148 * 59.99889 * 9 7 2 30 30 H 1.09007 * 109.46643 * 300.00043 * 9 7 2 31 31 H 1.08997 * 109.47307 * 30.00202 * 11 10 9 32 32 H 1.08998 * 109.47439 * 150.00347 * 11 10 9 33 33 H 1.09002 * 115.54889 * 29.33161 * 12 11 10 34 34 H 1.08997 * 117.49735 * 359.97438 * 13 12 11 35 35 H 1.08999 * 117.50572 * 145.02212 * 13 12 11 36 36 H 1.09004 * 117.49537 * 252.50808 * 14 13 12 37 37 H 1.08999 * 117.49974 * 107.48931 * 14 13 12 38 38 H 1.09004 * 109.46929 * 60.00118 * 17 15 10 39 39 H 1.08995 * 109.46997 * 300.00074 * 17 15 10 40 40 H 1.09004 * 109.47091 * 299.99900 * 18 17 15 41 41 H 1.08999 * 109.47269 * 59.99754 * 18 17 15 42 42 H 1.07998 * 119.91793 * 0.02562 * 20 19 18 43 43 H 1.08008 * 119.84831 * 179.97438 * 21 20 19 44 44 H 1.08004 * 119.92206 * 179.97438 * 22 21 20 45 45 H 1.08001 * 120.07756 * 180.02562 * 23 22 21 46 46 H 0.96696 * 117.00264 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 4.2436 -3.2661 1.2696 12 6 5.6884 -3.0258 1.7119 13 6 6.6118 -4.2424 1.8003 14 6 6.1085 -3.5696 3.0789 15 6 4.2250 -3.2104 -1.1663 16 8 4.0228 -2.6385 -2.2165 17 6 4.7278 -4.6310 -1.1664 18 6 4.8989 -5.1113 -2.6089 19 6 5.4024 -6.5317 -2.6090 20 6 4.5208 -7.5778 -2.7884 21 6 4.9814 -8.8822 -2.7893 22 6 6.3278 -9.1475 -2.6101 23 6 7.2199 -8.1114 -2.4287 24 6 6.7627 -6.7918 -2.4334 25 6 7.7134 -5.6766 -2.2474 26 8 7.3020 -4.5380 -2.1482 27 8 9.0365 -5.9223 -2.1876 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8910 30 1 3.8752 -0.6803 -0.8889 31 1 3.5625 -2.8821 2.0291 32 1 4.0767 -4.3353 1.1391 33 1 6.1282 -2.0822 1.3888 34 1 6.1899 -5.2142 1.5438 35 1 7.6594 -4.0996 1.5353 36 1 6.8250 -2.9840 3.6550 37 1 5.3556 -4.0986 3.6631 38 1 4.0099 -5.2706 -0.6528 39 1 5.6879 -4.6766 -0.6524 40 1 3.9390 -5.0656 -3.1233 41 1 5.6169 -4.4716 -3.1221 42 1 3.4689 -7.3777 -2.9292 43 1 4.2869 -9.6974 -2.9297 44 1 6.6806 -10.1683 -2.6115 45 1 8.2704 -8.3198 -2.2893 46 1 9.6194 -5.1606 -2.0645 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833760445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:55 Heat of formation + Delta-G solvation = -73.599081 kcal Electronic energy + Delta-G solvation = -28848.061906 eV Core-core repulsion = 24896.579977 eV Total energy + Delta-G solvation = -3951.481929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.81056 -39.23385 -38.79879 -37.17235 -36.32735 -34.51439 -33.67974 -32.40417 -31.60938 -30.08326 -28.28698 -26.32715 -25.17010 -24.07309 -22.42807 -22.26541 -21.78468 -20.71507 -20.56156 -18.25222 -18.23649 -17.45550 -16.84841 -16.70335 -15.89173 -15.77281 -15.57324 -15.30735 -14.99206 -14.69122 -14.57447 -13.99132 -13.94153 -13.46530 -13.28131 -13.18217 -12.69853 -12.54204 -12.46926 -12.14080 -11.89384 -11.83889 -11.78475 -11.44994 -11.42346 -11.36514 -11.23760 -10.83931 -10.78056 -10.49026 -10.27437 -10.09921 -10.06334 -9.80374 -9.46804 -9.30390 -9.08050 -8.76136 -8.53380 -7.61817 -6.03635 -4.01451 0.48730 1.08825 2.41075 2.84816 3.33454 3.39363 3.41846 3.50488 3.53485 3.80598 4.04447 4.44849 4.52192 4.58378 4.70522 4.83261 4.91407 5.03443 5.07959 5.09416 5.25580 5.29193 5.35621 5.42956 5.49103 5.52624 5.61643 5.67733 5.74882 5.83663 5.92955 5.98417 5.99499 6.06243 6.11890 6.16456 6.17139 6.21553 6.45702 6.46863 6.55064 6.68613 6.80452 7.04824 7.46542 7.68176 7.77907 8.38400 8.53888 8.99397 9.13962 9.57659 11.09872 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.003488 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.750507 B = 8025.325077 C = 8743.327067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.074 0.926 9 C 0.216 3.784 10 N -0.593 5.593 11 C 0.144 3.856 12 C -0.164 4.164 13 C -0.181 4.181 14 C -0.177 4.177 15 C 0.517 3.483 16 O -0.541 6.541 17 C -0.124 4.124 18 C -0.078 4.078 19 C -0.008 4.008 20 C -0.130 4.130 21 C -0.080 4.080 22 C -0.144 4.144 23 C -0.061 4.061 24 C -0.130 4.130 25 C 0.515 3.485 26 O -0.486 6.486 27 O -0.518 6.518 28 H 0.264 0.736 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.136 0.864 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.439 -19.421 -0.197 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.092 0.908 9 C 0.095 3.905 10 N -0.324 5.324 11 C 0.019 3.981 12 C -0.184 4.184 13 C -0.218 4.218 14 C -0.214 4.214 15 C 0.304 3.696 16 O -0.418 6.418 17 C -0.164 4.164 18 C -0.115 4.115 19 C -0.008 4.008 20 C -0.148 4.148 21 C -0.098 4.098 22 C -0.162 4.162 23 C -0.079 4.079 24 C -0.131 4.131 25 C 0.359 3.641 26 O -0.374 6.374 27 O -0.331 6.331 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.122 0.878 42 H 0.153 0.847 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.153 0.847 46 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 16.776 -18.981 -0.784 25.344 hybrid contribution 0.761 1.321 0.222 1.541 sum 17.537 -17.660 -0.562 24.895 Atomic orbital electron populations 1.69898 1.06171 1.26885 1.50854 1.24848 0.94746 0.98904 0.94527 0.86856 0.80198 0.83838 0.78848 1.19947 1.21143 1.19069 1.21350 0.89295 0.94763 1.50975 0.90793 1.19629 0.95509 0.78094 0.97224 1.47827 1.64456 1.15713 1.04369 1.21004 0.92965 0.96809 0.87286 1.22926 0.97021 0.98418 0.99994 1.22981 0.99514 0.97054 1.02274 1.22910 1.03618 1.04186 0.90710 1.20253 0.77581 0.87956 0.83799 1.90646 1.52187 1.68019 1.30992 1.21561 1.02627 0.94669 0.97526 1.20652 1.03014 0.90411 0.97422 1.20198 0.91081 0.97011 0.92505 1.21159 1.00222 0.91837 1.01557 1.21457 0.95819 0.96864 0.95667 1.21127 0.93419 0.99269 1.02416 1.21423 1.00380 0.91165 0.94967 1.18923 0.92050 0.91847 1.10246 1.20950 0.81181 0.88551 0.73446 1.90987 1.78366 1.23495 1.44546 1.84523 1.18576 1.44601 1.85358 0.92651 0.95371 0.94667 0.89393 0.91273 0.87598 0.89081 0.89415 0.89055 0.88674 0.90280 0.88659 0.90346 0.87780 0.84690 0.85327 0.85332 0.84657 0.72845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.18 13.96 55.43 0.77 -27.40 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 4 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.53 -15.45 9.94 -34.44 -0.34 -15.79 16 8 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 9 C 0.22 5.50 4.23 -5.19 -0.02 5.48 16 10 N -0.59 -12.81 2.46 -175.07 -0.43 -13.24 16 11 C 0.14 2.42 5.49 -4.05 -0.02 2.40 16 12 C -0.16 -2.38 5.95 -90.62 -0.54 -2.91 16 13 C -0.18 -2.15 9.18 -26.73 -0.25 -2.39 16 14 C -0.18 -2.03 10.25 -26.73 -0.27 -2.31 16 15 C 0.52 11.22 7.67 -10.98 -0.08 11.14 16 16 O -0.54 -14.03 15.56 5.56 0.09 -13.94 16 17 C -0.12 -2.02 3.76 -27.89 -0.10 -2.12 16 18 C -0.08 -1.20 3.90 -27.89 -0.11 -1.30 16 19 C -0.01 -0.09 5.17 -104.21 -0.54 -0.63 16 20 C -0.13 -1.30 9.66 -39.64 -0.38 -1.69 16 21 C -0.08 -0.64 10.04 -39.49 -0.40 -1.03 16 22 C -0.14 -1.08 10.03 -39.64 -0.40 -1.48 16 23 C -0.06 -0.54 9.62 -39.17 -0.38 -0.91 16 24 C -0.13 -1.45 5.87 -104.98 -0.62 -2.07 16 25 C 0.51 6.07 8.13 34.61 0.28 6.35 16 26 O -0.49 -7.33 12.38 -19.25 -0.24 -7.57 16 27 O -0.52 -4.37 12.70 -40.51 -0.51 -4.88 16 28 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 29 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 30 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 31 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 32 H 0.07 1.01 6.17 -51.93 -0.32 0.69 16 33 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.09 1.02 7.87 -51.93 -0.41 0.61 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.15 7.40 -51.93 -0.38 0.77 16 39 H 0.10 1.47 5.27 -51.93 -0.27 1.20 16 40 H 0.08 1.24 7.98 -51.93 -0.41 0.83 16 41 H 0.10 1.83 5.92 -51.93 -0.31 1.52 16 42 H 0.14 1.23 8.04 -52.49 -0.42 0.80 16 43 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 44 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 45 H 0.14 0.96 7.63 -52.49 -0.40 0.56 16 46 H 0.41 1.88 9.11 45.56 0.42 2.29 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -36.89 382.13 -9.29 -46.18 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.79 Total: 4.83 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -4.27 Total: -7.25 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.34 Total: -40.64 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.67 Total: -26.39 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.89 -9.29 -46.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.418 kcal (2) G-P(sol) polarization free energy of solvation -36.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds