Wall clock time and date at job start Tue Mar 31 2020 16:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48496 * 109.47401 * 269.99661 * 3 2 1 5 5 H 1.48498 * 109.47150 * 29.99623 * 3 2 1 6 6 H 1.48499 * 109.47251 * 149.99483 * 3 2 1 7 7 C 1.37880 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00174 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99791 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46811 * 180.02562 * 9 7 2 11 11 C 1.46489 * 119.99803 * 269.99737 * 10 9 7 12 12 C 1.52997 * 109.47411 * 270.00142 * 11 10 9 13 13 C 1.52999 * 117.50217 * 243.62614 * 12 11 10 14 14 C 1.53000 * 60.00069 * 252.50850 * 13 12 11 15 15 C 1.34778 * 120.00059 * 90.00174 * 10 9 7 16 16 O 1.21282 * 119.99777 * 359.97438 * 15 10 9 17 17 C 1.50700 * 120.00116 * 179.97438 * 15 10 9 18 18 C 1.52994 * 109.47072 * 180.02562 * 17 15 10 19 19 C 1.50700 * 109.47072 * 179.97438 * 18 17 15 20 20 C 1.37973 * 120.07857 * 98.60444 * 19 18 17 21 21 C 1.38336 * 120.15094 * 179.97438 * 20 19 18 22 22 C 1.38391 * 120.30358 * 0.02562 * 21 20 19 23 23 C 1.37919 * 120.15332 * 0.02562 * 22 21 20 24 24 C 1.39608 * 120.07549 * 278.33237 * 19 18 17 25 25 C 1.47724 * 120.15096 * 359.97373 * 24 19 18 26 26 O 1.21474 * 119.99776 * 5.42879 * 25 24 19 27 27 O 1.34706 * 120.00280 * 185.42299 * 25 24 19 28 28 H 0.96997 * 120.00241 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47148 * 59.99889 * 9 7 2 30 30 H 1.09007 * 109.46643 * 300.00043 * 9 7 2 31 31 H 1.08997 * 109.47307 * 30.00202 * 11 10 9 32 32 H 1.08998 * 109.47439 * 150.00347 * 11 10 9 33 33 H 1.09002 * 115.54889 * 29.33161 * 12 11 10 34 34 H 1.08997 * 117.49735 * 359.97438 * 13 12 11 35 35 H 1.08999 * 117.50572 * 145.02212 * 13 12 11 36 36 H 1.09004 * 117.49537 * 252.50808 * 14 13 12 37 37 H 1.08999 * 117.49974 * 107.48931 * 14 13 12 38 38 H 1.09004 * 109.46929 * 60.00118 * 17 15 10 39 39 H 1.08995 * 109.46997 * 300.00074 * 17 15 10 40 40 H 1.09004 * 109.47091 * 299.99900 * 18 17 15 41 41 H 1.08999 * 109.47269 * 59.99754 * 18 17 15 42 42 H 1.07998 * 119.91793 * 0.02562 * 20 19 18 43 43 H 1.08008 * 119.84831 * 179.97438 * 21 20 19 44 44 H 1.08004 * 119.92206 * 179.97438 * 22 21 20 45 45 H 1.08001 * 120.07756 * 180.02562 * 23 22 21 46 46 H 0.96696 * 117.00264 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 4.2436 -3.2661 1.2696 12 6 5.6884 -3.0258 1.7119 13 6 6.6118 -4.2424 1.8003 14 6 6.1085 -3.5696 3.0789 15 6 4.2250 -3.2104 -1.1663 16 8 4.0228 -2.6385 -2.2165 17 6 4.7278 -4.6310 -1.1664 18 6 4.8989 -5.1113 -2.6089 19 6 5.4024 -6.5317 -2.6090 20 6 4.5208 -7.5778 -2.7884 21 6 4.9814 -8.8822 -2.7893 22 6 6.3278 -9.1475 -2.6101 23 6 7.2199 -8.1114 -2.4287 24 6 6.7627 -6.7918 -2.4334 25 6 7.7134 -5.6766 -2.2474 26 8 7.3020 -4.5380 -2.1482 27 8 9.0365 -5.9223 -2.1876 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8910 30 1 3.8752 -0.6803 -0.8889 31 1 3.5625 -2.8821 2.0291 32 1 4.0767 -4.3353 1.1391 33 1 6.1282 -2.0822 1.3888 34 1 6.1899 -5.2142 1.5438 35 1 7.6594 -4.0996 1.5353 36 1 6.8250 -2.9840 3.6550 37 1 5.3556 -4.0986 3.6631 38 1 4.0099 -5.2706 -0.6528 39 1 5.6879 -4.6766 -0.6524 40 1 3.9390 -5.0656 -3.1233 41 1 5.6169 -4.4716 -3.1221 42 1 3.4689 -7.3777 -2.9292 43 1 4.2869 -9.6974 -2.9297 44 1 6.6806 -10.1683 -2.6115 45 1 8.2704 -8.3198 -2.2893 46 1 9.6194 -5.1606 -2.0645 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833760445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:54 Heat of formation + Delta-G solvation = -97.331742 kcal Electronic energy + Delta-G solvation = -28849.091032 eV Core-core repulsion = 24896.579977 eV Total energy + Delta-G solvation = -3952.511055 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70300 -40.78465 -39.60794 -38.41568 -37.17206 -36.22042 -34.85531 -34.54734 -32.32385 -31.38920 -30.00513 -27.76865 -26.36821 -25.14861 -23.84954 -23.22879 -22.90792 -21.89037 -21.50184 -19.88303 -19.10293 -19.02174 -18.39041 -17.99804 -17.22388 -16.88906 -16.66001 -16.45172 -16.25727 -15.95499 -15.73146 -15.34626 -15.04532 -14.81500 -14.49156 -14.30873 -14.11194 -13.91026 -13.83279 -13.61109 -13.45432 -13.00375 -12.84321 -12.71261 -12.62727 -12.55500 -12.44610 -12.32656 -12.08939 -12.02672 -11.89568 -11.78184 -11.29853 -11.12435 -10.94551 -10.85023 -10.57372 -10.00961 -9.75272 -9.43308 -8.36188 -6.40615 -0.26495 0.37665 1.28987 1.33301 1.41870 1.60614 1.82576 2.12088 2.26119 2.28790 2.80379 2.93834 2.97732 3.52090 3.78724 3.83315 3.95221 3.99072 4.06213 4.14415 4.16237 4.21415 4.28988 4.31558 4.46135 4.55045 4.61908 4.69994 4.71274 4.79494 4.83563 4.86968 4.90547 4.99029 5.03284 5.07665 5.16240 5.26485 5.30259 5.34587 5.43819 5.50804 5.58407 5.62315 5.70809 5.93380 6.22826 6.59560 6.69340 7.03321 7.19860 7.42887 8.80726 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.003488 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.750507 B = 8025.325077 C = 8743.327067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.243 1.243 7 C -0.534 4.534 8 H 0.031 0.969 9 C 0.227 3.773 10 N -0.599 5.599 11 C 0.142 3.858 12 C -0.191 4.191 13 C -0.167 4.167 14 C -0.155 4.155 15 C 0.504 3.496 16 O -0.595 6.595 17 C -0.106 4.106 18 C -0.069 4.069 19 C -0.028 4.028 20 C -0.140 4.140 21 C -0.072 4.072 22 C -0.133 4.133 23 C -0.057 4.057 24 C -0.146 4.146 25 C 0.518 3.482 26 O -0.530 6.530 27 O -0.505 6.505 28 H 0.269 0.731 29 H 0.045 0.955 30 H 0.013 0.987 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.136 0.864 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.156 0.844 46 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.083 -22.120 1.183 29.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.768 3.232 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.166 1.166 7 C -0.573 4.573 8 H 0.049 0.951 9 C 0.105 3.895 10 N -0.329 5.329 11 C 0.019 3.981 12 C -0.211 4.211 13 C -0.204 4.204 14 C -0.192 4.192 15 C 0.294 3.706 16 O -0.477 6.477 17 C -0.145 4.145 18 C -0.107 4.107 19 C -0.029 4.029 20 C -0.157 4.157 21 C -0.090 4.090 22 C -0.151 4.151 23 C -0.075 4.075 24 C -0.147 4.147 25 C 0.364 3.636 26 O -0.422 6.422 27 O -0.319 6.319 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.031 0.969 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.154 0.846 43 H 0.177 0.823 44 H 0.182 0.818 45 H 0.173 0.827 46 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 19.468 -21.727 0.643 29.180 hybrid contribution -0.062 2.002 -0.238 2.017 sum 19.406 -19.725 0.405 27.674 Atomic orbital electron populations 1.70034 1.08013 1.28315 1.51899 1.25795 0.95679 1.03100 0.93848 0.85756 0.79819 0.78698 0.78945 1.20296 1.19491 1.16644 1.21532 0.91348 0.93350 1.51075 0.95080 1.19265 0.92876 0.80757 0.96638 1.47938 1.63862 1.14657 1.06417 1.21223 0.94669 0.97455 0.84729 1.22650 0.95748 0.99131 1.03529 1.23060 0.99279 0.96113 1.01925 1.23032 1.03449 1.02982 0.89739 1.21283 0.76560 0.89825 0.82914 1.90602 1.54557 1.69623 1.32898 1.21492 1.03249 0.90859 0.98920 1.20418 1.01386 0.92715 0.96153 1.19922 0.92203 0.95240 0.95506 1.21282 1.00136 0.92525 1.01802 1.21811 0.96833 0.96426 0.93923 1.21573 0.92851 1.00590 1.00058 1.21687 1.01700 0.90114 0.93955 1.19010 0.91429 0.92906 1.11354 1.21158 0.82060 0.88098 0.72307 1.90983 1.79199 1.25139 1.46833 1.84479 1.17409 1.45459 1.84584 0.92192 0.93724 0.96927 0.90461 0.89006 0.89618 0.87974 0.88629 0.87659 0.87323 0.88322 0.87247 0.92197 0.90556 0.84607 0.82332 0.81812 0.82674 0.70903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.02 13.96 21.45 0.30 -60.72 16 2 C 0.01 0.86 5.47 84.66 0.46 1.32 16 3 Si 0.94 46.56 27.47 68.60 1.88 48.45 16 4 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 5 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.24 -10.98 6.54 99.48 0.65 -10.33 16 7 C -0.53 -32.95 9.94 25.60 0.25 -32.70 16 8 H 0.03 2.12 8.06 -2.92 -0.02 2.09 16 9 C 0.23 11.98 4.23 85.63 0.36 12.34 16 10 N -0.60 -26.93 2.46 -826.18 -2.03 -28.96 16 11 C 0.14 4.79 5.49 86.38 0.47 5.27 16 12 C -0.19 -5.35 5.95 -10.79 -0.06 -5.42 16 13 C -0.17 -3.53 9.18 30.59 0.28 -3.25 16 14 C -0.15 -3.12 10.25 30.59 0.31 -2.81 16 15 C 0.50 23.10 7.67 87.66 0.67 23.77 16 16 O -0.60 -33.13 15.56 -3.04 -0.05 -33.18 16 17 C -0.11 -3.55 3.76 29.85 0.11 -3.43 16 18 C -0.07 -2.25 3.90 29.85 0.12 -2.14 16 19 C -0.03 -0.68 5.17 -19.60 -0.10 -0.78 16 20 C -0.14 -2.62 9.66 22.23 0.21 -2.40 16 21 C -0.07 -0.89 10.04 22.33 0.22 -0.66 16 22 C -0.13 -1.40 10.03 22.23 0.22 -1.18 16 23 C -0.06 -0.80 9.62 22.54 0.22 -0.58 16 24 C -0.15 -3.07 5.87 -20.10 -0.12 -3.19 16 25 C 0.52 11.85 8.13 70.33 0.57 12.42 16 26 O -0.53 -16.43 12.38 19.92 0.25 -16.18 16 27 O -0.51 -7.55 12.70 -56.16 -0.71 -8.26 16 28 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 29 H 0.04 2.19 7.13 -2.39 -0.02 2.18 16 30 H 0.01 0.72 6.85 -2.38 -0.02 0.71 16 31 H 0.08 2.73 8.07 -2.39 -0.02 2.71 16 32 H 0.09 2.62 6.17 -2.39 -0.01 2.61 16 33 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.10 1.95 7.87 -2.39 -0.02 1.93 16 35 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.10 2.87 7.40 -2.39 -0.02 2.85 16 39 H 0.11 3.37 5.27 -2.39 -0.01 3.36 16 40 H 0.06 2.08 7.98 -2.38 -0.02 2.06 16 41 H 0.08 2.91 5.92 -2.39 -0.01 2.89 16 42 H 0.14 2.42 8.04 -2.91 -0.02 2.39 16 43 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 45 H 0.16 1.54 7.63 -2.91 -0.02 1.52 16 46 H 0.43 3.18 9.11 -74.06 -0.67 2.50 16 Total: -1.00 -86.50 382.13 4.13 -82.37 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.28 Total: 19.91 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 4.22 Total: -3.42 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -1.73 Total: -89.67 kcal Atomic # 8 Polarization: -57.11 SS G_CDS: -0.51 Total: -57.62 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.45 kcal Total: -86.50 4.13 -82.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.964 kcal (2) G-P(sol) polarization free energy of solvation -86.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds