Wall clock time and date at job start Tue Mar 31 2020 16:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 119.99712 * 2 1 4 4 O 1.21674 * 119.99959 * 185.74469 * 3 2 1 5 5 C 1.46901 * 119.99927 * 5.75387 * 3 2 1 6 6 C 1.36379 * 126.76462 * 7.10673 * 5 3 2 7 7 N 1.35456 * 109.77248 * 179.97438 * 6 5 3 8 8 C 1.46500 * 124.78932 * 180.02562 * 7 6 5 9 9 C 1.38040 * 110.41385 * 0.02562 * 7 6 5 10 10 C 1.39116 * 133.15180 * 179.97438 * 9 7 6 11 11 C 1.37759 * 119.96210 * 180.02562 * 10 9 7 12 12 C 1.38942 * 120.61078 * 0.02562 * 11 10 9 13 13 F 1.35103 * 119.87470 * 179.97438 * 12 11 10 14 14 C 1.37948 * 120.24667 * 359.95646 * 12 11 10 15 15 C 1.39288 * 119.65359 * 359.77660 * 14 12 11 16 16 C 1.46494 * 120.00247 * 180.02562 * 2 1 3 17 17 C 1.53503 * 114.20621 * 299.99541 * 16 2 1 18 18 N 1.47069 * 87.98188 * 87.72048 * 17 16 2 19 19 C 1.36939 * 136.05282 * 207.08878 * 18 17 16 20 20 H 1.07994 * 120.00237 * 7.15012 * 19 18 17 21 21 C 1.38815 * 119.99682 * 187.14557 * 19 18 17 22 22 N 1.31620 * 120.00055 * 6.67869 * 21 19 18 23 23 Si 1.86800 * 119.99823 * 186.67860 * 21 19 18 24 24 H 1.48501 * 109.47116 * 265.01551 * 23 21 19 25 25 H 1.48496 * 109.46925 * 25.01625 * 23 21 19 26 26 H 1.48499 * 109.46781 * 145.01739 * 23 21 19 27 27 C 1.47069 * 87.88560 * 27.34314 * 18 17 16 28 28 H 1.09001 * 109.47043 * 275.67843 * 1 2 3 29 29 H 1.09000 * 109.47555 * 35.68298 * 1 2 3 30 30 H 1.09004 * 109.47374 * 155.67943 * 1 2 3 31 31 H 1.08001 * 125.11556 * 0.02562 * 6 5 3 32 32 H 1.08999 * 109.46995 * 90.02874 * 8 7 6 33 33 H 1.08996 * 109.46882 * 210.02225 * 8 7 6 34 34 H 1.09004 * 109.47440 * 330.02577 * 8 7 6 35 35 H 1.07998 * 120.02186 * 0.02562 * 10 9 7 36 36 H 1.08003 * 119.69357 * 180.02562 * 11 10 9 37 37 H 1.08004 * 120.17350 * 180.02562 * 14 12 11 38 38 H 1.09007 * 113.28174 * 166.93286 * 16 2 1 39 39 H 1.08996 * 113.46368 * 332.94024 * 17 16 2 40 40 H 1.08995 * 113.46644 * 202.49543 * 17 16 2 41 41 H 0.96994 * 120.00056 * 179.97438 * 22 21 19 42 42 H 1.08994 * 113.46933 * 87.44210 * 27 18 17 43 43 H 1.09004 * 113.46166 * 217.87832 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3510 1.1700 -0.1055 5 6 1.4098 2.4362 0.1275 6 6 0.0799 2.5911 0.3872 7 7 -0.2278 3.9095 0.4319 8 6 -1.5660 4.4472 0.6891 9 6 0.8976 4.6746 0.2007 10 6 1.1193 6.0467 0.1398 11 6 2.3843 6.5286 -0.1158 12 6 3.4469 5.6559 -0.3152 13 9 4.6813 6.1447 -0.5654 14 6 3.2463 4.2923 -0.2582 15 6 1.9727 3.7935 0.0051 16 6 2.1975 -1.2686 -0.0006 17 6 1.9060 -2.1642 1.2116 18 7 0.7774 -2.7295 0.4570 19 6 -0.4240 -3.3093 0.7666 20 1 -0.7671 -3.3269 1.7905 21 6 -1.2008 -3.8742 -0.2356 22 7 -0.7271 -3.9709 -1.4598 23 14 -2.9183 -4.4972 0.1532 24 1 -2.8633 -5.9528 0.4424 25 1 -3.4497 -3.7769 1.3381 26 1 -3.8074 -4.2572 -1.0117 27 6 1.5095 -2.4040 -0.7763 28 1 -0.3633 0.1017 1.0226 29 1 -0.3634 0.8347 -0.5994 30 1 -0.3634 -0.9365 -0.4232 31 1 -0.6221 1.7839 0.5359 32 1 -1.6990 4.5933 1.7611 33 1 -1.6788 5.4020 0.1756 34 1 -2.3160 3.7465 0.3222 35 1 0.3002 6.7337 0.2929 36 1 2.5515 7.5946 -0.1617 37 1 4.0732 3.6150 -0.4130 38 1 3.2576 -1.1539 -0.2269 39 1 1.6007 -1.6087 2.0982 40 1 2.6958 -2.8867 1.4173 41 1 -1.2697 -4.3660 -2.1600 42 1 2.1947 -3.1896 -1.0945 43 1 0.8662 -2.0528 -1.5831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042942588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:01 Heat of formation + Delta-G solvation = 76.047095 kcal Electronic energy + Delta-G solvation = -28245.460833 eV Core-core repulsion = 24209.300495 eV Total energy + Delta-G solvation = -4036.160338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.80597 -41.71562 -39.54355 -37.51885 -37.06563 -34.21188 -33.01981 -32.10513 -30.26744 -29.33196 -27.91498 -26.88751 -26.38813 -24.61633 -23.66785 -23.10268 -22.13848 -21.24123 -19.84243 -18.49028 -17.55016 -17.25025 -16.77364 -16.70432 -15.90883 -15.74139 -15.37800 -15.22716 -15.12576 -14.82753 -14.67848 -14.11801 -13.77752 -13.61343 -13.36733 -13.10346 -12.99962 -12.97166 -12.66304 -12.57822 -12.46619 -12.37542 -11.55311 -11.37073 -11.18409 -11.09467 -10.94440 -10.81685 -10.67421 -10.15505 -9.90498 -9.80325 -9.49296 -9.45555 -8.85821 -8.34624 -8.02958 -7.76492 -6.96020 -5.87769 -3.19138 0.77155 1.22272 1.97505 2.46890 3.30397 3.36473 3.38650 3.39768 3.45910 3.84576 4.19201 4.36544 4.37293 4.38820 4.64134 4.75579 4.84264 4.99032 5.07789 5.15528 5.22054 5.29333 5.39094 5.41087 5.53985 5.57019 5.62101 5.79004 6.00217 6.04687 6.10069 6.14385 6.21845 6.45335 6.47117 6.53125 6.54808 6.66184 6.90770 6.91149 6.94753 7.10836 7.31073 7.45505 7.85904 8.00256 8.68096 8.94157 9.59985 10.56124 11.30138 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.003142 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.131018 B = 8910.688448 C =10094.956879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.573 5.573 3 C 0.585 3.415 4 O -0.554 6.554 5 C -0.219 4.219 6 C 0.097 3.903 7 N -0.474 5.474 8 C 0.073 3.927 9 C 0.074 3.926 10 C -0.097 4.097 11 C -0.136 4.136 12 C 0.071 3.929 13 F -0.142 7.142 14 C -0.095 4.095 15 C -0.037 4.037 16 C 0.085 3.915 17 C 0.103 3.897 18 N -0.606 5.606 19 C -0.219 4.219 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.917 5.917 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.280 1.280 26 H -0.290 1.290 27 C 0.152 3.848 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.117 0.883 31 H 0.203 0.797 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.255 0.745 42 H 0.042 0.958 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 20.291 3.117 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.302 5.302 3 C 0.375 3.625 4 O -0.434 6.434 5 C -0.229 4.229 6 C -0.033 4.033 7 N -0.156 5.156 8 C -0.068 4.068 9 C -0.030 4.030 10 C -0.117 4.117 11 C -0.156 4.156 12 C 0.051 3.949 13 F -0.121 7.121 14 C -0.114 4.114 15 C -0.042 4.042 16 C -0.020 4.020 17 C -0.024 4.024 18 N -0.333 5.333 19 C -0.346 4.346 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.563 5.563 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.205 1.205 26 H -0.216 1.216 27 C 0.026 3.974 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.135 0.865 31 H 0.220 0.780 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.119 0.881 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.235 20.244 3.046 20.509 hybrid contribution -0.900 -0.593 0.189 1.094 sum -2.135 19.650 3.235 20.029 Atomic orbital electron populations 1.22388 0.79584 1.05213 1.00660 1.47091 1.06933 1.04640 1.71579 1.17176 0.86526 0.82225 0.76552 1.90722 1.13674 1.87219 1.51760 1.20040 0.92909 0.92321 1.17645 1.23620 0.97005 0.85359 0.97320 1.43748 1.07691 1.05136 1.59017 1.22084 0.81016 1.01027 1.02710 1.18293 0.86319 0.92760 1.05608 1.19762 0.97041 0.91070 1.03831 1.20712 0.91384 0.99810 1.03646 1.17344 0.80259 0.91743 1.05581 1.91480 1.40186 1.88315 1.92129 1.20598 0.97462 0.93319 1.00008 1.18443 0.92038 0.91376 1.02312 1.22695 0.95892 0.83228 1.00224 1.22871 0.90991 0.93597 0.94958 1.45908 1.14192 1.71027 1.02168 1.18926 0.91257 1.30581 0.93834 0.90171 1.24818 0.99022 1.00472 0.95978 1.69849 1.36454 1.49182 1.00818 0.86167 0.84026 0.78836 0.77118 1.21653 1.20546 1.21626 1.22408 0.92444 0.90728 0.91834 0.92950 0.92280 0.86505 0.78041 0.90700 0.89791 0.89168 0.85301 0.84512 0.83580 0.88059 0.94007 0.94008 0.93532 0.93993 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 7.87 59.84 0.47 1.51 16 2 N -0.57 -10.38 3.12 -175.02 -0.55 -10.93 16 3 C 0.59 10.75 7.64 -12.75 -0.10 10.65 16 4 O -0.55 -11.64 15.70 5.21 0.08 -11.56 16 5 C -0.22 -3.39 6.11 -103.31 -0.63 -4.02 16 6 C 0.10 1.17 9.22 -16.62 -0.15 1.02 16 7 N -0.47 -4.85 3.15 -121.58 -0.38 -5.23 16 8 C 0.07 0.41 10.99 59.85 0.66 1.06 16 9 C 0.07 0.89 6.79 -83.94 -0.57 0.32 16 10 C -0.10 -0.93 9.91 -39.43 -0.39 -1.32 16 11 C -0.14 -1.39 9.99 -39.50 -0.39 -1.78 16 12 C 0.07 0.91 7.29 -39.43 -0.29 0.63 16 13 F -0.14 -1.89 17.26 2.25 0.04 -1.85 16 14 C -0.09 -1.40 9.84 -39.30 -0.39 -1.78 16 15 C -0.04 -0.55 6.27 -104.95 -0.66 -1.20 16 16 C 0.08 1.65 4.69 -67.68 -0.32 1.34 16 17 C 0.10 2.10 8.31 -8.50 -0.07 2.03 16 18 N -0.61 -14.38 2.46 -184.60 -0.45 -14.83 16 19 C -0.22 -5.62 10.16 -15.06 -0.15 -5.78 16 20 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 21 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 22 N -0.92 -25.54 11.84 55.49 0.66 -24.88 16 23 Si 0.91 20.63 29.56 -169.99 -5.02 15.61 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.15 3.42 6.24 -8.37 -0.05 3.37 16 28 H 0.05 0.78 7.39 -51.93 -0.38 0.40 16 29 H 0.06 0.79 5.31 -51.93 -0.28 0.52 16 30 H 0.12 2.37 5.07 -51.93 -0.26 2.10 16 31 H 0.20 2.07 4.30 -52.49 -0.23 1.84 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.34 8.03 -51.93 -0.42 -0.08 16 34 H 0.09 0.38 8.13 -51.93 -0.42 -0.05 16 35 H 0.13 0.82 8.01 -52.49 -0.42 0.40 16 36 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.15 2.32 7.48 -52.48 -0.39 1.93 16 38 H 0.10 1.96 7.26 -51.92 -0.38 1.59 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 1.59 6.86 -51.93 -0.36 1.23 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -32.25 355.82 -8.59 -40.84 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.19 Total: 1.68 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -3.13 Total: 5.79 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.72 Total: -55.86 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.25 -8.59 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042942588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.887 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds