Wall clock time and date at job start Tue Mar 31 2020 16:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 119.99712 * 2 1 4 4 O 1.21674 * 119.99959 * 185.74469 * 3 2 1 5 5 C 1.46901 * 119.99927 * 5.75387 * 3 2 1 6 6 C 1.36379 * 126.76462 * 7.10673 * 5 3 2 7 7 N 1.35456 * 109.77248 * 179.97438 * 6 5 3 8 8 C 1.46500 * 124.78932 * 180.02562 * 7 6 5 9 9 C 1.38040 * 110.41385 * 0.02562 * 7 6 5 10 10 C 1.39116 * 133.15180 * 179.97438 * 9 7 6 11 11 C 1.37759 * 119.96210 * 180.02562 * 10 9 7 12 12 C 1.38942 * 120.61078 * 0.02562 * 11 10 9 13 13 F 1.35103 * 119.87470 * 179.97438 * 12 11 10 14 14 C 1.37948 * 120.24667 * 359.95646 * 12 11 10 15 15 C 1.39288 * 119.65359 * 359.77660 * 14 12 11 16 16 C 1.46494 * 120.00247 * 180.02562 * 2 1 3 17 17 C 1.53503 * 114.20621 * 299.99541 * 16 2 1 18 18 N 1.47069 * 87.98188 * 87.72048 * 17 16 2 19 19 C 1.36939 * 136.05282 * 207.08878 * 18 17 16 20 20 H 1.07994 * 120.00237 * 7.15012 * 19 18 17 21 21 C 1.38815 * 119.99682 * 187.14557 * 19 18 17 22 22 N 1.31620 * 120.00055 * 6.67869 * 21 19 18 23 23 Si 1.86800 * 119.99823 * 186.67860 * 21 19 18 24 24 H 1.48501 * 109.47116 * 265.01551 * 23 21 19 25 25 H 1.48496 * 109.46925 * 25.01625 * 23 21 19 26 26 H 1.48499 * 109.46781 * 145.01739 * 23 21 19 27 27 C 1.47069 * 87.88560 * 27.34314 * 18 17 16 28 28 H 1.09001 * 109.47043 * 275.67843 * 1 2 3 29 29 H 1.09000 * 109.47555 * 35.68298 * 1 2 3 30 30 H 1.09004 * 109.47374 * 155.67943 * 1 2 3 31 31 H 1.08001 * 125.11556 * 0.02562 * 6 5 3 32 32 H 1.08999 * 109.46995 * 90.02874 * 8 7 6 33 33 H 1.08996 * 109.46882 * 210.02225 * 8 7 6 34 34 H 1.09004 * 109.47440 * 330.02577 * 8 7 6 35 35 H 1.07998 * 120.02186 * 0.02562 * 10 9 7 36 36 H 1.08003 * 119.69357 * 180.02562 * 11 10 9 37 37 H 1.08004 * 120.17350 * 180.02562 * 14 12 11 38 38 H 1.09007 * 113.28174 * 166.93286 * 16 2 1 39 39 H 1.08996 * 113.46368 * 332.94024 * 17 16 2 40 40 H 1.08995 * 113.46644 * 202.49543 * 17 16 2 41 41 H 0.96994 * 120.00056 * 179.97438 * 22 21 19 42 42 H 1.08994 * 113.46933 * 87.44210 * 27 18 17 43 43 H 1.09004 * 113.46166 * 217.87832 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3510 1.1700 -0.1055 5 6 1.4098 2.4362 0.1275 6 6 0.0799 2.5911 0.3872 7 7 -0.2278 3.9095 0.4319 8 6 -1.5660 4.4472 0.6891 9 6 0.8976 4.6746 0.2007 10 6 1.1193 6.0467 0.1398 11 6 2.3843 6.5286 -0.1158 12 6 3.4469 5.6559 -0.3152 13 9 4.6813 6.1447 -0.5654 14 6 3.2463 4.2923 -0.2582 15 6 1.9727 3.7935 0.0051 16 6 2.1975 -1.2686 -0.0006 17 6 1.9060 -2.1642 1.2116 18 7 0.7774 -2.7295 0.4570 19 6 -0.4240 -3.3093 0.7666 20 1 -0.7671 -3.3269 1.7905 21 6 -1.2008 -3.8742 -0.2356 22 7 -0.7271 -3.9709 -1.4598 23 14 -2.9183 -4.4972 0.1532 24 1 -2.8633 -5.9528 0.4424 25 1 -3.4497 -3.7769 1.3381 26 1 -3.8074 -4.2572 -1.0117 27 6 1.5095 -2.4040 -0.7763 28 1 -0.3633 0.1017 1.0226 29 1 -0.3634 0.8347 -0.5994 30 1 -0.3634 -0.9365 -0.4232 31 1 -0.6221 1.7839 0.5359 32 1 -1.6990 4.5933 1.7611 33 1 -1.6788 5.4020 0.1756 34 1 -2.3160 3.7465 0.3222 35 1 0.3002 6.7337 0.2929 36 1 2.5515 7.5946 -0.1617 37 1 4.0732 3.6150 -0.4130 38 1 3.2576 -1.1539 -0.2269 39 1 1.6007 -1.6087 2.0982 40 1 2.6958 -2.8867 1.4173 41 1 -1.2697 -4.3660 -2.1600 42 1 2.1947 -3.1896 -1.0945 43 1 0.8662 -2.0528 -1.5831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042942588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:01 Heat of formation + Delta-G solvation = 57.805800 kcal Electronic energy + Delta-G solvation = -28246.251835 eV Core-core repulsion = 24209.300495 eV Total energy + Delta-G solvation = -4036.951340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.144 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.82647 -42.66310 -41.05409 -39.11230 -37.95532 -35.68523 -34.27307 -33.68145 -31.11053 -30.49745 -29.50250 -28.01710 -27.54740 -26.37357 -25.23250 -24.02757 -23.47839 -22.20773 -21.14390 -19.99370 -18.77364 -18.44722 -18.23468 -17.77414 -17.07479 -16.87623 -16.80191 -16.40903 -16.28782 -16.09368 -15.89673 -15.57945 -15.23081 -14.91103 -14.52383 -14.24226 -14.12977 -14.04213 -13.81989 -13.77800 -13.53582 -13.26652 -13.16250 -13.04380 -12.76489 -12.42480 -12.28429 -12.03708 -12.02135 -11.91413 -11.69850 -11.29857 -11.02606 -10.76510 -10.71808 -9.51147 -9.27115 -8.90075 -8.74646 -7.87781 -5.20597 -0.17378 0.29872 0.90797 1.50788 1.52779 1.61587 1.67346 2.08105 2.29369 2.50608 2.72648 3.24505 3.33999 3.46768 3.54959 3.61114 3.73482 3.83369 3.99534 4.10720 4.27223 4.30376 4.42223 4.44140 4.48874 4.53630 4.63233 4.67911 4.70637 4.80470 4.81564 4.90972 4.95600 5.05259 5.15533 5.19628 5.19720 5.30601 5.43568 5.48659 5.60211 5.77512 5.89919 5.99176 6.16501 6.58958 6.92697 7.27189 7.62451 8.63102 9.30497 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.003142 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.131018 B = 8910.688448 C =10094.956879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.577 5.577 3 C 0.582 3.418 4 O -0.594 6.594 5 C -0.267 4.267 6 C 0.126 3.874 7 N -0.461 5.461 8 C 0.060 3.940 9 C 0.069 3.931 10 C -0.074 4.074 11 C -0.132 4.132 12 C 0.065 3.935 13 F -0.150 7.150 14 C -0.130 4.130 15 C -0.065 4.065 16 C 0.102 3.898 17 C 0.109 3.891 18 N -0.621 5.621 19 C -0.221 4.221 20 H 0.087 0.913 21 C -0.058 4.058 22 N -0.951 5.951 23 Si 0.974 3.026 24 H -0.297 1.297 25 H -0.261 1.261 26 H -0.295 1.295 27 C 0.157 3.843 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.222 0.778 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.177 0.823 36 H 0.171 0.829 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.248 0.752 42 H 0.028 0.972 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.331 23.372 4.648 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.306 5.306 3 C 0.375 3.625 4 O -0.477 6.477 5 C -0.277 4.277 6 C -0.008 4.008 7 N -0.141 5.141 8 C -0.079 4.079 9 C -0.035 4.035 10 C -0.094 4.094 11 C -0.151 4.151 12 C 0.045 3.955 13 F -0.129 7.129 14 C -0.150 4.150 15 C -0.069 4.069 16 C -0.003 4.003 17 C -0.018 4.018 18 N -0.347 5.347 19 C -0.348 4.348 20 H 0.105 0.895 21 C -0.251 4.251 22 N -0.599 5.599 23 Si 0.803 3.197 24 H -0.225 1.225 25 H -0.185 1.185 26 H -0.221 1.221 27 C 0.030 3.970 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.238 0.762 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.194 0.806 36 H 0.189 0.811 37 H 0.133 0.867 38 H 0.118 0.882 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.343 23.373 4.612 24.216 hybrid contribution 0.061 -1.450 -0.262 1.475 sum -4.281 21.923 4.350 22.757 Atomic orbital electron populations 1.22383 0.78311 1.04336 1.01966 1.47145 1.07672 1.04020 1.71793 1.17650 0.86272 0.83078 0.75484 1.90687 1.15510 1.87797 1.53722 1.19850 0.94609 0.91203 1.22061 1.23710 0.95672 0.86814 0.94589 1.44058 1.09010 1.04211 1.56784 1.22557 0.78434 1.02483 1.04390 1.18523 0.85956 0.93452 1.05595 1.20265 0.97909 0.90505 1.00680 1.21092 0.90587 1.00987 1.02461 1.17609 0.80838 0.91509 1.05518 1.91455 1.40962 1.88240 1.92209 1.20479 0.97263 0.94067 1.03164 1.18647 0.92962 0.91957 1.03377 1.22387 0.95748 0.83419 0.98788 1.22917 0.90075 0.93572 0.95219 1.46062 1.14675 1.70831 1.03171 1.19251 0.91991 1.29547 0.94043 0.89548 1.25554 1.02522 1.01247 0.95801 1.70030 1.37647 1.50570 1.01700 0.85129 0.79731 0.77644 0.77201 1.22457 1.18539 1.22142 1.22274 0.91892 0.91505 0.91335 0.91159 0.89346 0.90321 0.76195 0.88936 0.87442 0.87409 0.80614 0.81112 0.86732 0.88199 0.93026 0.93117 0.94292 0.95413 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.29 7.87 127.77 1.01 3.30 16 2 N -0.58 -21.33 3.12 -825.85 -2.57 -23.90 16 3 C 0.58 22.19 7.64 86.51 0.66 22.86 16 4 O -0.59 -26.68 15.70 -4.27 -0.07 -26.75 16 5 C -0.27 -8.26 6.11 -19.02 -0.12 -8.38 16 6 C 0.13 2.73 9.22 83.70 0.77 3.50 16 7 N -0.46 -7.63 3.15 -538.58 -1.69 -9.32 16 8 C 0.06 0.34 10.99 127.77 1.40 1.74 16 9 C 0.07 1.45 6.79 38.90 0.26 1.72 16 10 C -0.07 -1.08 9.91 22.37 0.22 -0.86 16 11 C -0.13 -2.26 9.99 22.33 0.22 -2.04 16 12 C 0.07 1.67 7.29 22.37 0.16 1.83 16 13 F -0.15 -4.04 17.26 44.97 0.78 -3.26 16 14 C -0.13 -4.07 9.84 22.45 0.22 -3.85 16 15 C -0.06 -1.93 6.27 -20.08 -0.13 -2.05 16 16 C 0.10 4.14 4.69 45.55 0.21 4.36 16 17 C 0.11 4.44 8.31 83.18 0.69 5.13 16 18 N -0.62 -29.85 2.46 -737.96 -1.81 -31.66 16 19 C -0.22 -11.33 10.16 84.03 0.85 -10.48 16 20 H 0.09 4.25 7.84 -2.91 -0.02 4.23 16 21 C -0.06 -3.04 5.50 84.86 0.47 -2.57 16 22 N -0.95 -54.34 11.84 21.65 0.26 -54.08 16 23 Si 0.97 42.36 29.56 68.60 2.03 44.39 16 24 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 26 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 27 C 0.16 7.34 6.24 83.27 0.52 7.86 16 28 H 0.07 1.96 7.39 -2.39 -0.02 1.95 16 29 H 0.09 2.24 5.31 -2.39 -0.01 2.23 16 30 H 0.08 3.22 5.07 -2.39 -0.01 3.21 16 31 H 0.22 3.79 4.30 -2.91 -0.01 3.77 16 32 H 0.09 0.29 8.14 -2.39 -0.02 0.28 16 33 H 0.11 0.17 8.03 -2.39 -0.02 0.15 16 34 H 0.11 0.30 8.13 -2.38 -0.02 0.28 16 35 H 0.18 0.96 8.01 -2.91 -0.02 0.94 16 36 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.11 4.14 7.48 -2.91 -0.02 4.12 16 38 H 0.10 4.07 7.26 -2.38 -0.02 4.06 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 42 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.04 2.15 6.86 -2.38 -0.02 2.13 16 Total: -1.00 -74.85 355.82 5.40 -69.44 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.05 Total: 13.10 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 7.44 Total: 22.05 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -5.82 Total: -118.97 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.07 Total: -26.75 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.78 Total: -3.26 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -74.85 5.40 -69.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042942588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.249 kcal (2) G-P(sol) polarization free energy of solvation -74.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds