Wall clock time and date at job start Tue Mar 31 2020 16:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47089 * 2 1 4 4 C 1.46504 * 119.99929 * 287.24075 * 3 2 1 5 5 C 1.53003 * 109.47230 * 270.00237 * 4 3 2 6 6 N 1.46497 * 109.46899 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99895 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99881 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00435 * 179.97438 * 7 6 5 10 10 N 1.31618 * 120.00397 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99663 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47284 * 90.00222 * 11 9 7 13 13 H 1.48501 * 109.47422 * 209.99825 * 11 9 7 14 14 H 1.48501 * 109.47302 * 329.99714 * 11 9 7 15 15 C 1.34765 * 119.99885 * 107.24559 * 3 2 1 16 16 O 1.21572 * 120.00240 * 176.76232 * 15 3 2 17 17 C 1.47765 * 120.00187 * 357.03582 * 15 3 2 18 18 C 1.40611 * 120.27029 * 331.78756 * 17 15 3 19 19 N 1.30788 * 121.53430 * 179.97438 * 18 17 15 20 20 C 1.33797 * 121.72095 * 0.02562 * 19 18 17 21 21 C 1.40748 * 120.82230 * 179.97438 * 20 19 18 22 22 F 1.35104 * 120.12058 * 0.02562 * 21 20 19 23 23 C 1.36332 * 119.76426 * 180.02562 * 21 20 19 24 24 C 1.39299 * 121.05986 * 359.92286 * 23 21 20 25 25 C 1.36140 * 120.86995 * 0.05859 * 24 23 21 26 26 C 1.40555 * 119.66596 * 359.97438 * 25 24 23 27 27 C 1.38999 * 120.27129 * 151.51153 * 17 15 3 28 28 H 1.09005 * 109.47550 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47365 * 299.99814 * 1 2 3 30 30 H 1.09010 * 109.47271 * 60.00051 * 1 2 3 31 31 H 1.09001 * 109.46933 * 239.99869 * 2 1 3 32 32 H 1.09001 * 109.46854 * 120.00397 * 2 1 3 33 33 H 1.08998 * 109.47134 * 30.00150 * 4 3 2 34 34 H 1.09000 * 109.47039 * 149.99853 * 4 3 2 35 35 H 1.08998 * 109.46991 * 300.00000 * 5 4 3 36 36 H 1.09005 * 109.46983 * 59.99992 * 5 4 3 37 37 H 0.96998 * 120.00526 * 359.97438 * 6 5 4 38 38 H 0.97006 * 120.00103 * 180.02562 * 10 9 7 39 39 H 1.07996 * 119.22862 * 359.97367 * 18 17 15 40 40 H 1.08008 * 119.47256 * 179.97438 * 23 21 20 41 41 H 1.08013 * 119.56695 * 180.02562 * 24 23 21 42 42 H 1.07999 * 120.17272 * 180.02562 * 25 24 23 43 43 H 1.07998 * 121.01765 * 359.97438 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9079 2.1971 -1.2118 5 6 3.1684 2.0219 -2.0612 6 7 3.0582 2.8384 -3.2726 7 6 4.0742 2.8418 -4.1906 8 1 4.9570 2.2430 -4.0214 9 6 3.9697 3.6149 -5.3387 10 7 4.9465 3.6187 -6.2209 11 14 2.4426 4.6501 -5.6317 12 1 2.6377 5.9984 -5.0408 13 1 2.2048 4.7794 -7.0919 14 1 1.2713 3.9955 -4.9956 15 6 2.5691 1.9011 1.1146 16 8 3.0277 3.0269 1.0979 17 6 2.6212 1.1007 2.3556 18 6 1.6511 0.1134 2.6035 19 7 1.6738 -0.6096 3.6932 20 6 2.6192 -0.4467 4.6259 21 6 2.6252 -1.2350 5.7919 22 9 1.6700 -2.1712 5.9823 23 6 3.5985 -1.0504 6.7285 24 6 4.5937 -0.0920 6.5516 25 6 4.6211 0.6891 5.4369 26 6 3.6335 0.5276 4.4499 27 6 3.6329 1.3135 3.2847 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.0366 1.8804 -1.7850 34 1 1.7991 3.2458 -0.9350 35 1 4.0397 2.3387 -1.4880 36 1 3.2771 0.9732 -2.3380 37 1 2.2653 3.3759 -3.4248 38 1 4.8736 4.1593 -7.0230 39 1 0.8690 -0.0515 1.8772 40 1 3.5984 -1.6577 7.6217 41 1 5.3534 0.0336 7.3091 42 1 5.3982 1.4285 5.3111 43 1 4.3936 2.0616 3.1176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715743469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:34 Heat of formation + Delta-G solvation = 21.289410 kcal Electronic energy + Delta-G solvation = -27367.070087 eV Core-core repulsion = 23328.535278 eV Total energy + Delta-G solvation = -4038.534809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.144 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.23565 -41.53491 -39.90747 -37.44901 -36.60712 -34.89551 -33.68252 -32.21770 -31.14050 -30.79178 -30.19141 -28.25227 -25.40358 -24.67116 -23.80216 -23.18482 -22.52461 -21.51804 -20.09399 -19.08918 -18.33136 -17.66394 -17.56745 -17.09466 -16.29094 -16.17950 -15.83524 -15.50509 -15.20692 -14.86538 -14.52076 -14.32441 -14.16783 -13.92131 -13.71513 -13.64703 -13.48919 -13.01310 -12.91315 -12.67192 -12.64040 -12.29401 -12.19359 -11.79481 -11.62705 -11.31039 -11.18441 -11.10975 -10.82208 -10.76061 -10.41656 -10.18402 -9.79501 -9.60791 -9.33044 -8.90608 -8.77690 -8.60846 -7.25763 -5.77037 -3.13572 -0.28630 0.05792 1.28330 2.10376 2.68797 2.87167 3.36945 3.40784 3.45317 3.45739 3.51218 3.74636 4.02227 4.16857 4.28032 4.29373 4.44810 4.58895 4.59704 4.62057 4.84406 4.87823 5.03917 5.09421 5.19051 5.35679 5.39117 5.41124 5.44993 5.53919 5.56337 5.57822 5.61105 5.69824 5.79600 5.85658 5.90259 5.96838 6.23282 6.33446 6.58711 6.75226 7.23680 7.28735 7.95965 8.00909 8.41047 9.19432 9.91500 10.10488 11.41217 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023558 B = 0.002410 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.287201 B =11616.859881 C =12303.340469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.075 3.925 3 N -0.597 5.597 4 C 0.105 3.895 5 C 0.146 3.854 6 N -0.753 5.753 7 C -0.244 4.244 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.277 1.277 15 C 0.559 3.441 16 O -0.520 6.520 17 C -0.177 4.177 18 C 0.136 3.864 19 N -0.467 5.467 20 C 0.108 3.892 21 C 0.122 3.878 22 F -0.122 7.122 23 C -0.132 4.132 24 C -0.096 4.096 25 C -0.093 4.093 26 C -0.089 4.089 27 C 0.008 3.992 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.032 0.968 36 H 0.027 0.973 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.191 0.809 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.485 -11.179 27.711 30.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.048 4.048 3 N -0.329 5.329 4 C -0.017 4.017 5 C 0.018 3.982 6 N -0.399 5.399 7 C -0.373 4.373 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.717 3.283 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.346 3.654 16 O -0.396 6.396 17 C -0.182 4.182 18 C -0.036 4.036 19 N -0.175 5.175 20 C -0.014 4.014 21 C 0.101 3.899 22 F -0.100 7.100 23 C -0.153 4.153 24 C -0.114 4.114 25 C -0.112 4.112 26 C -0.091 4.091 27 C -0.019 4.019 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.208 0.792 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.671 -11.345 27.817 30.774 hybrid contribution -0.580 1.127 -0.540 1.378 sum -7.251 -10.218 27.278 30.018 Atomic orbital electron populations 1.22317 0.95260 1.03244 1.03155 1.22311 0.94904 0.82865 1.04692 1.47753 1.59910 1.13719 1.11552 1.21778 0.99632 0.96120 0.84198 1.20881 0.94920 0.94916 0.87468 1.42544 1.21175 1.54672 1.21540 1.19019 0.97156 1.23300 0.97859 0.89250 1.24676 0.97624 0.99968 0.96889 1.69704 1.32274 1.44369 1.11812 0.86520 0.83660 0.81005 0.77157 1.20970 1.21690 1.20339 1.17994 0.78474 0.86238 0.82682 1.90849 1.45606 1.18812 1.84363 1.21077 0.99226 1.00379 0.97546 1.24231 0.97182 0.88728 0.93489 1.68037 1.22449 1.25497 1.01478 1.18957 0.92949 0.95385 0.94155 1.17129 0.89057 0.89663 0.94010 1.91540 1.61738 1.61900 1.94815 1.20980 0.94476 1.00349 0.99491 1.20740 0.98039 0.94634 0.98013 1.21149 0.97554 0.99603 0.92885 1.18616 0.96779 0.97329 0.96346 1.21961 0.95839 0.94576 0.89506 0.90530 0.91852 0.90902 0.89435 0.88633 0.90097 0.89521 0.94975 0.95514 0.80649 0.93017 0.79248 0.83801 0.84160 0.84002 0.82395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 9.12 37.16 0.34 -1.02 16 2 C 0.08 0.71 5.61 -4.04 -0.02 0.68 16 3 N -0.60 -7.71 2.52 -174.83 -0.44 -8.16 16 4 C 0.10 1.62 5.43 -4.04 -0.02 1.59 16 5 C 0.15 2.90 6.58 -4.04 -0.03 2.87 16 6 N -0.75 -18.20 5.41 -59.91 -0.32 -18.53 16 7 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 8 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 9 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 10 N -0.93 -29.62 13.97 55.49 0.78 -28.84 16 11 Si 0.89 22.21 27.73 -169.99 -4.71 17.50 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 14 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 15 C 0.56 7.94 7.47 -12.37 -0.09 7.85 16 16 O -0.52 -9.31 16.32 5.30 0.09 -9.23 16 17 C -0.18 -2.06 5.50 -104.83 -0.58 -2.64 16 18 C 0.14 1.43 8.56 -17.10 -0.15 1.29 16 19 N -0.47 -5.50 10.17 -10.63 -0.11 -5.60 16 20 C 0.11 1.19 6.61 -84.72 -0.56 0.63 16 21 C 0.12 1.19 7.30 -39.32 -0.29 0.90 16 22 F -0.12 -1.33 17.11 2.25 0.04 -1.29 16 23 C -0.13 -0.88 9.91 -39.87 -0.40 -1.28 16 24 C -0.10 -0.53 9.95 -39.94 -0.40 -0.93 16 25 C -0.09 -0.63 9.77 -39.46 -0.39 -1.01 16 26 C -0.09 -0.85 5.74 -106.82 -0.61 -1.46 16 27 C 0.01 0.08 9.47 -38.43 -0.36 -0.28 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.46 6.85 -51.93 -0.36 0.10 16 30 H 0.07 0.59 7.28 -51.92 -0.38 0.21 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.10 0.83 4.11 -51.93 -0.21 0.61 16 33 H 0.08 1.09 7.17 -51.93 -0.37 0.72 16 34 H 0.09 1.45 7.47 -51.93 -0.39 1.06 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.36 8.38 5.53 -40.82 -0.23 8.15 16 38 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 39 H 0.19 1.65 2.82 -52.49 -0.15 1.50 16 40 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 41 H 0.14 0.36 8.06 -52.48 -0.42 -0.06 16 42 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.16 1.49 7.94 -52.49 -0.42 1.07 16 LS Contribution 359.27 15.07 5.41 5.41 Total: -1.00 -35.90 359.27 -8.13 -44.03 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.05 Total: 4.69 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -3.80 Total: 0.02 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.10 Total: -61.13 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.90 -8.13 -44.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715743469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.317 kcal (2) G-P(sol) polarization free energy of solvation -35.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds