Wall clock time and date at job start Tue Mar 31 2020 16:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86794 * 119.99791 * 2 1 4 4 H 1.48502 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47062 * 299.99606 * 3 2 1 6 6 H 1.48494 * 109.47387 * 59.99487 * 3 2 1 7 7 C 1.38700 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99939 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99962 * 359.97438 * 7 2 1 10 10 C 1.35520 * 116.99990 * 185.06325 * 9 7 2 11 11 C 1.38839 * 120.16159 * 354.40586 * 10 9 7 12 12 C 1.38024 * 120.07205 * 180.29657 * 11 10 9 13 13 C 1.38568 * 120.40110 * 359.68298 * 12 11 10 14 14 C 1.37828 * 120.32182 * 0.02562 * 13 12 11 15 15 C 1.39662 * 119.92275 * 0.02562 * 14 13 12 16 16 C 1.47538 * 120.19650 * 180.02562 * 15 14 13 17 17 O 1.21599 * 119.99710 * 179.97438 * 16 15 14 18 18 N 1.34772 * 120.00434 * 359.97438 * 16 15 14 19 19 C 1.46497 * 120.00431 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.21138 * 324.38013 * 19 18 16 21 21 C 1.52657 * 109.21343 * 83.66910 * 19 18 16 22 22 C 1.53266 * 108.61656 * 182.35699 * 21 19 18 23 23 C 1.52851 * 108.37351 * 296.68020 * 22 21 19 24 24 C 1.51073 * 111.36705 * 59.15555 * 23 22 21 25 25 H 1.08995 * 109.01148 * 185.53576 * 24 23 22 26 26 O 1.43401 * 113.05070 * 65.25589 * 24 23 22 27 27 C 1.44141 * 106.15953 * 195.23485 * 26 24 23 28 28 C 1.54218 * 107.31115 * 25.94247 * 27 26 24 29 29 C 1.53015 * 109.21710 * 204.99807 * 19 18 16 30 30 H 1.08996 * 112.30044 * 311.80174 * 29 19 18 31 31 H 0.96998 * 119.99967 * 0.02562 * 1 2 3 32 32 H 1.08010 * 119.96300 * 359.97438 * 11 10 9 33 33 H 1.08001 * 119.79566 * 179.69967 * 12 11 10 34 34 H 1.07998 * 119.84149 * 180.02562 * 13 12 11 35 35 H 1.08007 * 120.03524 * 179.97438 * 14 13 12 36 36 H 0.97009 * 119.99627 * 359.97438 * 18 16 15 37 37 H 1.08994 * 109.58271 * 62.63321 * 21 19 18 38 38 H 1.09004 * 109.64180 * 302.11621 * 21 19 18 39 39 H 1.09001 * 109.68704 * 176.95031 * 22 21 19 40 40 H 1.08997 * 109.69036 * 56.41501 * 22 21 19 41 41 H 1.09007 * 109.09842 * 179.63465 * 23 22 21 42 42 H 1.08997 * 109.10343 * 298.72994 * 23 22 21 43 43 H 1.08994 * 109.87362 * 266.50833 * 27 26 24 44 44 H 1.09001 * 109.99153 * 145.44191 * 27 26 24 45 45 H 1.08999 * 110.53475 * 240.94636 * 28 27 26 46 46 H 1.09001 * 110.53105 * 118.17845 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3347 -2.3687 0.0016 10 6 2.0687 -3.5028 0.1086 11 6 3.4556 -3.4401 0.0942 12 6 4.2014 -4.5970 0.1972 13 6 3.5747 -5.8265 0.3221 14 6 2.1989 -5.9072 0.3443 15 6 1.4311 -4.7453 0.2399 16 6 -0.0420 -4.8246 0.2635 17 8 -0.7069 -3.8106 0.1729 18 7 -0.6506 -6.0209 0.3856 19 6 -2.1132 -6.0997 0.4085 20 1 -2.5112 -5.2297 0.9308 21 6 -2.6385 -6.1066 -1.0249 22 6 -4.1704 -6.1296 -0.9845 23 6 -4.6154 -7.4330 -0.3216 24 6 -4.0654 -7.5532 1.0803 25 1 -4.3221 -8.5344 1.4795 26 8 -4.5834 -6.5586 1.9740 27 6 -3.7204 -6.5679 3.1284 28 6 -2.3427 -7.0852 2.6672 29 6 -2.5377 -7.3696 1.1492 30 1 -1.9962 -8.2503 0.8039 31 1 -0.4850 0.8400 -0.0004 32 1 3.9514 -2.4855 -0.0029 33 1 5.2799 -4.5434 0.1806 34 1 4.1670 -6.7259 0.4024 35 1 1.7152 -6.8680 0.4414 36 1 -0.1201 -6.8298 0.4575 37 1 -2.2728 -6.9927 -1.5437 38 1 -2.2995 -5.2099 -1.5437 39 1 -4.5653 -6.0803 -1.9993 40 1 -4.5354 -5.2804 -0.4068 41 1 -5.7044 -7.4587 -0.2808 42 1 -4.2609 -8.2748 -0.9163 43 1 -4.1289 -7.2307 3.8911 44 1 -3.6224 -5.5587 3.5286 45 1 -2.0811 -8.0010 3.1972 46 1 -1.5781 -6.3232 2.8183 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153995708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:53 Heat of formation + Delta-G solvation = -85.258844 kcal Electronic energy + Delta-G solvation = -29149.876560 eV Core-core repulsion = 25197.889025 eV Total energy + Delta-G solvation = -3951.987535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.73627 -39.43106 -37.99718 -36.34967 -35.83255 -33.87920 -32.33794 -31.90937 -30.56824 -29.37376 -28.91395 -27.87535 -25.37810 -23.60644 -22.97391 -22.23971 -21.42795 -21.04316 -19.96175 -19.48526 -18.04928 -17.58944 -16.69492 -16.22281 -15.75548 -15.23832 -15.07496 -14.63387 -14.61634 -14.45547 -14.18388 -14.11718 -13.91271 -13.68959 -13.20149 -13.03761 -12.78229 -12.51423 -12.42992 -12.06787 -11.88406 -11.71579 -11.68514 -11.48968 -11.31831 -11.13106 -11.00087 -10.91300 -10.77700 -10.65981 -10.50833 -10.44042 -10.18458 -9.62854 -9.54164 -8.87820 -8.78526 -8.48975 -8.26374 -7.30439 -6.43669 -4.03701 1.72576 2.31933 3.12046 3.13046 3.18749 3.55597 3.76761 3.90318 3.94080 4.36922 4.47904 4.65309 4.81288 4.89962 4.99415 5.07503 5.12255 5.13542 5.17988 5.26280 5.39423 5.40602 5.47899 5.50041 5.57973 5.62606 5.71753 5.74240 5.77963 5.86080 5.99422 6.01146 6.05492 6.12465 6.17641 6.25376 6.43532 6.50341 6.56861 6.70294 6.84974 6.91860 7.04034 7.07030 7.24495 7.30069 7.69782 7.93030 8.16880 8.96001 9.14528 9.68506 10.70100 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.003651 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.373235 B = 7667.620960 C = 8941.822521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.045 3.955 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.404 4.404 8 H 0.094 0.906 9 O -0.123 6.123 10 C 0.189 3.811 11 C -0.238 4.238 12 C -0.051 4.051 13 C -0.232 4.232 14 C -0.039 4.039 15 C -0.227 4.227 16 C 0.554 3.446 17 O -0.499 6.499 18 N -0.741 5.741 19 C 0.161 3.839 20 H 0.091 0.909 21 C -0.131 4.131 22 C -0.115 4.115 23 C -0.111 4.111 24 C 0.089 3.911 25 H 0.058 0.942 26 O -0.367 6.367 27 C 0.046 3.954 28 C -0.156 4.156 29 C -0.123 4.123 30 H 0.097 0.903 31 H 0.271 0.729 32 H 0.131 0.869 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.389 0.611 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 -16.804 2.123 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.480 4.480 8 H 0.111 0.889 9 O -0.021 6.021 10 C 0.129 3.871 11 C -0.257 4.257 12 C -0.070 4.070 13 C -0.251 4.251 14 C -0.057 4.057 15 C -0.232 4.232 16 C 0.343 3.657 17 O -0.372 6.372 18 N -0.395 5.395 19 C 0.056 3.944 20 H 0.109 0.891 21 C -0.169 4.169 22 C -0.153 4.153 23 C -0.148 4.148 24 C 0.031 3.969 25 H 0.076 0.924 26 O -0.286 6.286 27 C -0.031 4.031 28 C -0.193 4.193 29 C -0.142 4.142 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.149 0.851 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.223 0.777 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.465 -15.618 2.014 16.368 hybrid contribution 1.154 0.152 0.164 1.175 sum -3.311 -15.466 2.178 15.966 Atomic orbital electron populations 1.70141 1.05950 1.27606 1.42588 1.25383 0.95794 0.98936 0.96197 0.85671 0.79189 0.80324 0.78364 1.18980 1.20009 1.20016 1.21541 0.91900 0.81136 1.53404 0.88856 1.84176 1.33511 1.10967 1.73491 1.19283 0.89834 0.87453 0.90517 1.21164 0.93427 0.99310 1.11847 1.20889 0.98613 0.92327 0.95170 1.20452 0.94079 0.97082 1.13450 1.20747 0.93818 0.95493 0.95690 1.18881 0.92085 0.92115 1.20098 1.18229 0.87716 0.82922 0.76788 1.90955 1.65730 1.33822 1.46722 1.46010 1.06160 1.09030 1.78345 1.20731 0.80541 0.97475 0.95621 0.89117 1.21950 0.95300 1.02619 0.97081 1.21486 0.95548 0.97731 1.00542 1.21129 1.01215 0.99160 0.93342 1.22181 0.91263 0.91864 0.91586 0.92399 1.88848 1.51191 1.58942 1.29640 1.23206 0.89162 1.01985 0.88700 1.23254 0.98504 1.02271 0.95305 1.22990 0.96943 0.98743 0.95501 0.88457 0.91912 0.85114 0.87239 0.87352 0.87142 0.77672 0.92155 0.90688 0.91638 0.90877 0.91166 0.90598 0.92454 0.89699 0.90807 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.19 13.67 55.48 0.76 -24.43 16 2 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 3 Si 0.94 20.62 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.40 -11.47 9.49 30.90 0.29 -11.17 16 8 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 9 O -0.12 -3.64 7.84 -21.06 -0.17 -3.81 16 10 C 0.19 4.68 6.66 -38.60 -0.26 4.43 16 11 C -0.24 -5.12 9.16 -39.44 -0.36 -5.48 16 12 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 13 C -0.23 -3.76 10.02 -39.61 -0.40 -4.16 16 14 C -0.04 -0.65 9.53 -39.20 -0.37 -1.03 16 15 C -0.23 -4.89 5.89 -104.81 -0.62 -5.50 16 16 C 0.55 12.01 7.71 -12.47 -0.10 11.91 16 17 O -0.50 -13.56 14.83 -16.58 -0.25 -13.81 16 18 N -0.74 -11.68 4.72 -55.01 -0.26 -11.94 16 19 C 0.16 2.36 1.42 -68.10 -0.10 2.26 16 20 H 0.09 1.68 7.19 -51.93 -0.37 1.30 16 21 C -0.13 -1.85 5.46 -26.77 -0.15 -1.99 16 22 C -0.11 -1.42 5.92 -26.67 -0.16 -1.58 16 23 C -0.11 -1.12 5.62 -27.78 -0.16 -1.27 16 24 C 0.09 0.96 3.01 -27.16 -0.08 0.88 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 O -0.37 -4.89 11.01 -35.23 -0.39 -5.28 16 27 C 0.05 0.53 7.58 37.79 0.29 0.81 16 28 C -0.16 -1.67 6.30 -24.67 -0.16 -1.83 16 29 C -0.12 -1.33 3.11 -88.65 -0.28 -1.61 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.13 2.79 5.64 -52.48 -0.30 2.49 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.11 1.42 6.40 -52.48 -0.34 1.09 16 36 H 0.39 4.88 6.62 -40.82 -0.27 4.61 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 41 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.10 7.55 -51.93 -0.39 0.70 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -34.62 367.91 -9.43 -44.05 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.57 Total: 9.55 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -3.09 Total: -15.47 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.50 Total: -36.37 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.80 Total: -22.89 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.62 -9.43 -44.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153995708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.207 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds