Wall clock time and date at job start Tue Mar 31 2020 18:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.54896 * 2 1 4 4 C 1.53032 * 109.54945 * 239.70783 * 2 1 3 5 5 C 1.52591 * 109.98714 * 303.79264 * 4 2 1 6 6 H 1.09006 * 109.20986 * 50.29509 * 5 4 2 7 7 N 1.46498 * 109.24128 * 169.71149 * 5 4 2 8 8 C 1.34783 * 119.99907 * 206.15143 * 7 5 4 9 9 O 1.21283 * 119.99731 * 0.02562 * 8 7 5 10 10 C 1.50702 * 120.00007 * 180.02562 * 8 7 5 11 11 C 1.53003 * 109.46878 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.46838 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47119 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.52590 * 110.64272 * 290.01405 * 5 4 2 23 23 C 1.53034 * 109.98635 * 69.98244 * 22 5 4 24 24 S 1.81665 * 109.00268 * 296.35582 * 23 22 5 25 25 O 1.42100 * 108.66477 * 168.62734 * 24 23 22 26 26 O 1.42101 * 108.66096 * 299.96771 * 24 23 22 27 27 H 1.09011 * 109.46917 * 299.80722 * 1 2 3 28 28 H 1.08998 * 109.47101 * 59.80721 * 1 2 3 29 29 H 1.08996 * 109.47133 * 179.81156 * 1 2 3 30 30 H 1.09001 * 109.47390 * 180.19579 * 3 2 1 31 31 H 1.09004 * 109.46737 * 300.19335 * 3 2 1 32 32 H 1.09002 * 109.47643 * 60.19230 * 3 2 1 33 33 H 1.09004 * 109.38606 * 183.63399 * 4 2 1 34 34 H 1.09001 * 109.38212 * 63.94873 * 4 2 1 35 35 H 0.97000 * 120.00381 * 26.15417 * 7 5 4 36 36 H 1.08998 * 109.46799 * 60.00721 * 10 8 7 37 37 H 1.08994 * 109.46990 * 300.00444 * 10 8 7 38 38 H 1.08998 * 109.46943 * 60.00655 * 11 10 8 39 39 H 1.08994 * 109.47116 * 300.00266 * 11 10 8 40 40 H 1.09004 * 109.46806 * 60.00265 * 12 11 10 41 41 H 1.09000 * 109.47828 * 300.00570 * 12 11 10 42 42 H 1.09004 * 109.47066 * 60.00422 * 13 12 11 43 43 H 1.08994 * 109.47405 * 300.00252 * 13 12 11 44 44 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 45 45 H 1.09005 * 109.38343 * 190.14262 * 22 5 4 46 46 H 1.09000 * 109.38327 * 309.93325 * 22 5 4 47 47 H 1.09002 * 109.54505 * 56.21000 * 23 22 5 48 48 H 1.08997 * 109.54961 * 176.49177 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 6 2.0421 -0.7274 -1.2452 5 6 1.4650 -2.1390 -1.2989 6 1 0.3846 -2.0902 -1.1629 7 7 1.7608 -2.7320 -2.6054 8 6 0.9615 -3.6957 -3.1045 9 8 -0.0028 -4.0716 -2.4721 10 6 1.2660 -4.3063 -4.4483 11 6 0.2126 -5.3660 -4.7774 12 6 0.5214 -5.9853 -6.1419 13 6 -0.5322 -7.0446 -6.4714 14 6 -0.2277 -7.6551 -7.8151 15 1 0.6317 -7.3213 -8.3777 16 6 -1.0427 -8.6442 -8.3236 17 7 -0.7739 -9.1808 -9.4938 18 14 -2.5288 -9.2220 -7.3503 19 1 -3.7112 -8.4030 -7.7194 20 1 -2.7989 -10.6491 -7.6600 21 1 -2.2575 -9.0734 -5.8979 22 6 2.0711 -3.0100 -0.2024 23 6 1.5626 -2.5555 1.1676 24 16 2.1379 -0.8609 1.4798 25 8 1.4540 -0.3506 2.6160 26 8 3.5587 -0.8522 1.4594 27 1 -0.3633 0.5109 0.8918 28 1 -0.3633 0.5168 -0.8882 29 1 -0.3633 -1.0276 -0.0034 30 1 3.1320 1.4404 -0.0035 31 1 1.6765 1.9571 -0.8883 32 1 1.6822 1.9552 0.8917 33 1 3.1302 -0.7825 -1.2102 34 1 1.7376 -0.1779 -2.1360 35 1 2.5318 -2.4312 -3.1114 36 1 2.2522 -4.7698 -4.4216 37 1 1.2503 -3.5291 -5.2123 38 1 -0.7734 -4.9021 -4.8042 39 1 0.2280 -6.1431 -4.0134 40 1 1.5075 -6.4491 -6.1156 41 1 0.5059 -5.2079 -6.9058 42 1 -1.5182 -6.5804 -6.4979 43 1 -0.5171 -7.8221 -5.7077 44 1 -1.3474 -9.8764 -9.8516 45 1 1.7868 -4.0493 -0.3674 46 1 3.1573 -2.9232 -0.2304 47 1 0.4728 -2.5785 1.1780 48 1 1.9501 -3.2204 1.9394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343398084.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:32 Heat of formation + Delta-G solvation = -165.726971 kcal Electronic energy + Delta-G solvation = -26686.208198 eV Core-core repulsion = 22866.175255 eV Total energy + Delta-G solvation = -3820.032943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.14540 -39.13434 -38.15598 -37.16760 -36.67065 -35.77393 -34.59701 -33.94087 -31.85908 -29.75399 -28.47091 -27.60166 -25.94891 -23.99676 -22.94230 -21.89351 -21.66892 -21.27232 -19.45399 -18.84808 -18.19112 -17.63525 -17.48800 -17.19525 -16.90204 -16.70159 -16.31618 -15.77784 -15.38050 -15.13068 -15.02685 -14.74467 -14.67149 -14.23650 -14.10367 -13.88553 -13.71535 -13.58854 -13.45125 -13.33174 -13.22635 -13.10232 -12.98035 -12.85025 -12.73521 -12.53041 -12.31532 -12.22721 -12.04541 -11.85676 -11.74802 -11.54457 -11.48860 -11.32534 -11.24835 -10.90114 -10.75694 -10.75024 -10.13641 -8.29192 -6.32141 -1.04930 1.35057 1.36763 1.49291 1.62302 1.67878 2.06224 2.36202 2.58464 2.93099 3.06250 3.30577 3.36606 3.59257 3.70877 3.75747 3.86010 4.00220 4.07149 4.09359 4.19598 4.20773 4.53871 4.59670 4.64849 4.66233 4.68320 4.70545 4.73841 4.77521 4.80644 4.86129 4.90263 5.01466 5.04790 5.15372 5.17887 5.21815 5.25527 5.30884 5.46556 5.62958 5.67682 5.70041 6.30228 6.58406 6.76157 7.30449 7.32684 8.87331 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.030767 B = 0.001932 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.843552 B =14489.599734 C =14673.214128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.503 4.503 3 C -0.144 4.144 4 C -0.109 4.109 5 C 0.118 3.882 6 H 0.098 0.902 7 N -0.712 5.712 8 C 0.516 3.484 9 O -0.579 6.579 10 C -0.134 4.134 11 C -0.098 4.098 12 C -0.094 4.094 13 C -0.018 4.018 14 C -0.530 4.530 15 H 0.037 0.963 16 C 0.002 3.998 17 N -0.951 5.951 18 Si 0.948 3.052 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.251 1.251 22 C -0.125 4.125 23 C -0.596 4.596 24 S 2.410 3.590 25 O -0.975 6.975 26 O -0.966 6.966 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.420 0.580 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.013 0.987 43 H 0.013 0.987 44 H 0.266 0.734 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.149 0.851 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.585 24.148 22.573 33.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.597 4.597 3 C -0.202 4.202 4 C -0.148 4.148 5 C 0.013 3.987 6 H 0.115 0.885 7 N -0.364 5.364 8 C 0.304 3.696 9 O -0.458 6.458 10 C -0.173 4.173 11 C -0.136 4.136 12 C -0.132 4.132 13 C -0.055 4.055 14 C -0.568 4.568 15 H 0.055 0.945 16 C -0.195 4.195 17 N -0.592 5.592 18 Si 0.772 3.228 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.175 1.175 22 C -0.164 4.164 23 C -0.727 4.727 24 S 2.597 3.403 25 O -0.972 6.972 26 O -0.963 6.963 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.258 0.742 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.031 0.969 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.167 0.833 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.353 24.102 23.656 34.563 hybrid contribution -0.774 -1.037 -0.767 1.504 sum 6.578 23.065 22.889 33.154 Atomic orbital electron populations 1.22003 0.88719 1.04407 1.05863 1.29423 1.06995 1.08661 1.14621 1.21832 1.02430 0.90222 1.05691 1.21768 1.02644 0.92721 0.97645 1.21224 1.02309 0.92001 0.83155 0.88459 1.45826 1.31071 1.39450 1.20086 1.21098 0.81653 0.78803 0.88035 1.90698 1.30451 1.62348 1.62345 1.21694 1.01861 0.99903 0.93844 1.21277 0.98516 0.97478 0.96315 1.21342 0.98607 0.97458 0.95802 1.19583 0.96120 0.95391 0.94399 1.21558 1.11557 1.19842 1.03807 0.94504 1.26018 1.01203 0.96377 0.95880 1.70063 1.40712 1.28450 1.19950 0.85685 0.79386 0.77494 0.80251 1.19199 1.20882 1.17520 1.21725 1.02348 1.02233 0.90132 1.30137 1.13810 1.22197 1.06567 1.08352 0.75249 0.79115 0.77582 1.93532 1.76369 1.78773 1.48573 1.93532 1.28806 1.86595 1.87374 0.90239 0.88443 0.90658 0.90397 0.87746 0.91007 0.87763 0.86331 0.74172 0.86663 0.86440 0.92865 0.93100 0.92589 0.92434 0.96869 0.96882 0.92559 0.90113 0.88479 0.83278 0.83392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 7.85 71.98 0.56 -0.52 16 2 C -0.50 -3.97 0.81 -10.78 -0.01 -3.98 16 3 C -0.14 -0.91 8.49 71.98 0.61 -0.30 16 4 C -0.11 -0.62 4.05 30.47 0.12 -0.49 16 5 C 0.12 1.24 2.05 44.72 0.09 1.34 16 6 H 0.10 1.24 5.25 -2.38 -0.01 1.23 16 7 N -0.71 -8.00 5.05 -443.81 -2.24 -10.25 16 8 C 0.52 10.28 7.75 87.66 0.68 10.96 16 9 O -0.58 -16.80 15.63 -3.04 -0.05 -16.84 16 10 C -0.13 -2.56 5.70 29.85 0.17 -2.39 16 11 C -0.10 -2.90 4.50 30.59 0.14 -2.76 16 12 C -0.09 -3.45 5.15 30.59 0.16 -3.30 16 13 C -0.02 -0.83 4.04 29.85 0.12 -0.71 16 14 C -0.53 -30.75 9.66 25.60 0.25 -30.51 16 15 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 16 C 0.00 0.11 5.47 84.66 0.46 0.57 16 17 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 18 Si 0.95 45.35 27.47 68.60 1.88 47.24 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 22 C -0.12 -1.47 5.29 30.47 0.16 -1.31 16 23 C -0.60 -6.38 5.95 71.99 0.43 -5.95 16 24 S 2.41 33.48 4.22 -56.49 -0.24 33.25 16 25 O -0.98 -20.32 17.73 -127.40 -2.26 -22.58 16 26 O -0.97 -18.84 17.92 -127.40 -2.28 -21.13 16 27 H 0.08 0.61 7.96 -2.38 -0.02 0.59 16 28 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.52 4.98 -2.39 -0.01 0.51 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.10 0.40 8.01 -2.38 -0.02 0.38 16 34 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.42 1.94 8.60 -92.71 -0.80 1.14 16 36 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 40 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.01 0.61 7.58 -2.38 -0.02 0.59 16 43 H 0.01 0.61 7.19 -2.39 -0.02 0.60 16 44 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 45 H 0.08 1.26 8.10 -2.38 -0.02 1.24 16 46 H 0.10 0.93 8.01 -2.39 -0.02 0.91 16 47 H 0.15 1.24 7.26 -2.39 -0.02 1.23 16 48 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -83.88 386.34 -0.85 -84.73 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 0.09 Total: 4.72 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 3.95 Total: -39.36 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -1.94 Total: -70.02 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -4.59 Total: -60.55 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.24 kcal Atomic # 16 Polarization: 33.48 SS G_CDS: -0.24 Total: 33.25 kcal Total: -83.88 -0.85 -84.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343398084.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.999 kcal (2) G-P(sol) polarization free energy of solvation -83.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds